Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G123800 Populus trichocarpa HOM05D004353 ORTHO05D004989 1.1e-139 500.0 257 100.0
Sabra06G0098000 Salix brachista HOM05D004353 ORTHO05D004989 3.7e-127 458.4 257 91.1
Manes.11G130500 Manihot esculenta HOM05D004353 ORTHO05D004989 2.3e-68 263.1 254 55.5
Gorai.013G257700 Gossypium raimondii HOM05D004353 ORTHO05D004989 7.6e-64 248.1 204 64.7
Gorai.011G261300 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.3e-63 247.3 206 64.6
Gohir.A13G222400 Gossypium hirsutum HOM05D004353 ORTHO05D004989 1.7e-63 246.9 206 63.1
Gohir.D10G228800 Gossypium hirsutum HOM05D004353 ORTHO05D004989 2.9e-63 246.1 206 64.6
Gorai.012G140500 Gossypium raimondii HOM05D004353 ORTHO05D004989 7.1e-62 241.5 198 66.2
Gohir.D13G227200 Gossypium hirsutum HOM05D004353 ORTHO05D004989 4.6e-61 238.8 244 57.0
Cpa.g.sc9.354 Carica papaya HOM05D004353 ORTHO05D004989 6.0e-61 238.4 255 53.3
PGR031G1729 Punica granatum HOM05D004353 ORTHO05D004989 5.1e-60 235.3 254 53.9
Thecc.09G282100 Theobroma cacao HOM05D004353 ORTHO05D004989 1.1e-59 234.2 202 62.4
TWI63G0567 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 2.1e-58 229.9 256 51.6
MD08G1231200 Malus domestica HOM05D004353 ORTHO05D004989 6.2e-58 228.4 255 54.1
Cfa015265 Carpinus fangiana HOM05D004353 ORTHO05D004989 8.4e-55 218.0 254 48.0
QL10p054510 Quercus lobata HOM05D004353 ORTHO05D004989 8.4e-55 218.0 254 50.4
QL10p053348 Quercus lobata HOM05D004353 ORTHO05D004989 1.4e-54 217.2 254 50.0
TWI15G0091 Tripterygium wilfordii HOM05D004353 ORTHO05D004989 2.1e-53 213.4 183 65.6
RcHm_v2.0_Chr4g0406201 Rosa chinensis HOM05D004353 ORTHO05D004989 3.5e-53 212.6 256 51.6
Duzib168G0981 Durio zibethinus HOM05D004353 ORTHO05D004989 6.0e-53 211.8 205 57.1
Eucgr.A01325 Eucalyptus grandis HOM05D004353 ORTHO05D004989 3.0e-52 209.5 229 55.0
COL.COLO4_19851 Corchorus olitorius HOM05D004353 ORTHO05D004989 3.9e-52 209.1 193 63.7
Aa31LG1G25350 Aethionema arabicum HOM05D004353 ORTHO05D004989 6.7e-52 208.4 255 48.2
MD15G1424100 Malus domestica HOM05D004353 ORTHO05D004989 8.7e-52 208.0 217 57.1
FAN22G0682 Fragaria x ananassa HOM05D004353 ORTHO05D004989 2.5e-51 206.5 258 51.6
FAN17G1422 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.6e-51 205.3 260 51.5
FAN07G2673 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.3e-50 204.1 232 54.3
Sp4g25730 Schrenkiella parvula HOM05D004353 ORTHO05D004989 1.6e-50 203.8 259 45.2
FAN12G3936 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.8e-50 202.2 232 54.3
FAN12G4128 Fragaria x ananassa HOM05D004353 ORTHO05D004989 4.8e-50 202.2 232 54.3
Prupe.1G205800 Prunus persica HOM05D004353 ORTHO05D004989 8.1e-50 201.4 209 56.5
FvH4_4g10550 Fragaria vesca HOM05D004353 ORTHO05D004989 1.1e-49 201.1 232 54.3
AT2G43630 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 2.4e-49 199.9 259 43.2
AL4G42450 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 3.1e-49 199.5 258 44.2
Thhalv10001554m.g Eutrema salsugineum HOM05D004353 ORTHO05D004989 3.1e-49 199.5 257 45.9
Carub.0004s2616 Capsella rubella HOM05D004353 ORTHO05D004989 4.0e-49 199.1 256 44.5
CiPaw.02G101000 Carya illinoinensis HOM05D004353 ORTHO05D004989 5.3e-49 198.7 255 48.2
Atru.chr6.1925 Acer truncatum HOM05D004353 ORTHO05D004989 1.2e-48 197.6 181 60.2
CARHR138810 Cardamine hirsuta HOM05D004353 ORTHO05D004989 1.9e-46 190.3 258 44.6
Ciclev10021938m.g Citrus clementina HOM05D004353 ORTHO05D004989 7.1e-46 188.3 189 54.5
BcaB06g29332 Brassica carinata HOM05D004353 ORTHO05D004989 9.3e-46 188.0 229 46.7
THA.LOC104803988 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 1.2e-45 187.6 246 43.5
BolC4t28561H Brassica oleracea HOM05D004353 ORTHO05D004989 2.3e-44 183.3 258 45.0
Oeu043896.1 Olea europaea HOM05D004353 ORTHO05D004989 3.0e-44 183.0 210 48.1
BcaC02g07160 Brassica carinata HOM05D004353 ORTHO05D004989 5.1e-44 182.2 258 44.6
C04p70590 Brassica napus HOM05D004353 ORTHO05D004989 5.1e-44 182.2 258 45.0
BraA04t18750Z Brassica rapa HOM05D004353 ORTHO05D004989 5.1e-44 182.2 203 48.8
Sp5g03540 Schrenkiella parvula HOM05D004353 ORTHO05D004989 6.7e-44 181.8 263 43.3
CsaV3_1G036770 Cucumis sativus L. HOM05D004353 ORTHO05D004989 2.5e-43 179.9 248 44.8
Peaxi162Scf00008g03715 Petunia axillaris HOM05D004353 ORTHO05D004989 4.3e-43 179.1 177 54.8
Prupe.1G570000 Prunus persica HOM05D004353 ORTHO05D004989 5.6e-43 178.7 212 53.8
A04p32910 Brassica napus HOM05D004353 ORTHO05D004989 7.4e-43 178.3 204 50.5
Duzib150G0228 Durio zibethinus HOM05D004353 ORTHO05D004989 9.6e-43 177.9 252 45.6
Migut.M00919 Erythranthe guttata HOM05D004353 ORTHO05D004989 9.6e-43 177.9 186 54.3
Atru.chr4.1388 Acer truncatum HOM05D004353 ORTHO05D004989 2.1e-42 176.8 179 55.9
Lj2g0015848 Lotus japonicus HOM05D004353 ORTHO05D004989 2.8e-42 176.4 256 43.4
THA.LOC104802322 Tarenaya hassleriana HOM05D004353 ORTHO05D004989 6.2e-42 175.3 260 43.8
Hma1.2p1_0017F.1_g011670 Hydrangea macrophylla HOM05D004353 ORTHO05D004989 8.2e-42 174.9 194 53.1
AUR62025025 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.1e-41 174.5 250 44.8
CANSAT54G2783 Cannabis sativa HOM05D004353 ORTHO05D004989 1.4e-41 174.1 193 54.4
Glyma.09G118100 Glycine max HOM05D004353 ORTHO05D004989 2.4e-41 173.3 255 42.4
Cc04_g05110 Coffea canephora HOM05D004353 ORTHO05D004989 4.0e-41 172.6 257 44.4
RcHm_v2.0_Chr2g0115921 Rosa chinensis HOM05D004353 ORTHO05D004989 6.9e-41 171.8 229 51.1
Sc05g0005560 Simmondsia chinensis HOM05D004353 ORTHO05D004989 9.0e-41 171.4 240 46.7
ClCG03G006580 Citrullus lanatus HOM05D004353 ORTHO05D004989 1.5e-40 170.6 244 45.1
GSVIVG01038129001 Vitis vinifera HOM05D004353 ORTHO05D004989 7.6e-40 168.3 184 51.1
Glyma.07G165200 Glycine max HOM05D004353 ORTHO05D004989 1.7e-39 167.2 192 50.0
Nitab4.5_0000214g0170 Nicotiana tabacum HOM05D004353 ORTHO05D004989 6.5e-39 165.2 177 53.7
CAN.G162.60 Capsicum annuum HOM05D004353 ORTHO05D004989 1.1e-38 164.5 179 51.4
AUR62006505 Chenopodium quinoa HOM05D004353 ORTHO05D004989 1.1e-38 164.5 249 40.2
BcaC07g40471 Brassica carinata HOM05D004353 ORTHO05D004989 1.4e-38 164.1 266 41.4
BraA09t40627Z Brassica rapa HOM05D004353 ORTHO05D004989 1.4e-38 164.1 259 43.2
TAR362G0930 Trochodendron aralioides HOM05D004353 ORTHO05D004989 3.2e-38 162.9 178 52.8
MSTRG.16235 Avicennia marina HOM05D004353 ORTHO05D004989 5.5e-38 162.2 177 52.5
A09p51910 Brassica napus HOM05D004353 ORTHO05D004989 5.5e-38 162.2 259 42.9
Nitab4.5_0000518g0010 Nicotiana tabacum HOM05D004353 ORTHO05D004989 7.1e-38 161.8 177 53.7
TAR633G2112 Trochodendron aralioides HOM05D004353 ORTHO05D004989 7.1e-38 161.8 184 53.3
VMungo1215G1727 Vigna mungo HOM05D004353 ORTHO05D004989 9.3e-38 161.4 186 48.4
FAN19G0170 Fragaria x ananassa HOM05D004353 ORTHO05D004989 1.2e-37 161.0 240 45.8
BcaC07g40494 Brassica carinata HOM05D004353 ORTHO05D004989 2.7e-37 159.8 260 42.7
C08p34630 Brassica napus HOM05D004353 ORTHO05D004989 2.7e-37 159.8 260 42.7
BolC8t51065H Brassica oleracea HOM05D004353 ORTHO05D004989 2.7e-37 159.8 260 42.7
Sed0022603 Sechium edule HOM05D004353 ORTHO05D004989 1.0e-36 157.9 237 41.8
Haze_01374 Corylus avellana HOM05D004353 ORTHO05D004989 2.3e-36 156.8 299 39.5
Ah.03g147060 Amaranthus hybridus HOM05D004353 ORTHO05D004989 3.0e-36 156.4 185 49.2
Solyc04g054460.3 Solanum lycopersicum HOM05D004353 ORTHO05D004989 1.5e-35 154.1 183 51.4
Sopen04g024280 Solanum pennellii HOM05D004353 ORTHO05D004989 1.5e-35 154.1 183 51.4
MELO3C002758.2 Cucumis melo HOM05D004353 ORTHO05D004989 2.5e-35 153.3 228 43.0
unitig_61.g26169 Utricularia gibba HOM05D004353 ORTHO05D004989 3.3e-35 152.9 186 47.8
arahy.Tifrunner.gnm1.ann1.ZXP0UV Arachis hypogaea HOM05D004353 ORTHO05D004989 1.3e-34 151.0 184 45.1
Phvul.003G023800 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 1.4e-33 147.5 198 43.4
AT3G59640 Arabidopsis thaliana HOM05D004353 ORTHO05D004989 2.4e-33 146.7 243 43.2
Hund04296 Selenicereus undatus HOM05D004353 ORTHO05D004989 3.1e-33 146.4 181 50.8
FvH4_1g21910 Fragaria vesca HOM05D004353 ORTHO05D004989 5.9e-32 142.1 171 53.2
arahy.Tifrunner.gnm1.ann1.WL5XYL Arachis hypogaea HOM05D004353 ORTHO05D004989 7.6e-32 141.7 184 44.0
PSO675G4101 Papaver somniferum HOM05D004353 ORTHO05D004989 7.6e-32 141.7 189 46.0
Aqoxy3G00280 Aquilegia oxysepala HOM05D004353 ORTHO05D004989 1.3e-31 141.0 192 46.9
SalBow8G1390 Salvia bowleyana HOM05D004353 ORTHO05D004989 2.9e-31 139.8 219 43.4
AL5G41660 Arabidopsis lyrata HOM05D004353 ORTHO05D004989 3.8e-31 139.4 249 40.6
EL10Ac6g15412 Beta vulgaris HOM05D004353 ORTHO05D004989 5.0e-31 139.0 226 42.5
FAN28G0555 Fragaria x ananassa HOM05D004353 ORTHO05D004989 5.0e-31 139.0 222 44.6
PSO017G5600 Papaver somniferum HOM05D004353 ORTHO05D004989 6.5e-31 138.7 188 45.7
Gorai.013G194600 Gossypium raimondii HOM05D004353 ORTHO05D004989 8.5e-31 138.3 254 40.9
Sed0011106 Sechium edule HOM05D004353 ORTHO05D004989 1.1e-30 137.9 243 40.3
PGSC0003DMG400005514 Solanum tuberosum HOM05D004353 ORTHO05D004989 3.2e-30 136.3 152 53.3
MBI08_g25559_MAGBIO Magnolia biondii HOM05D004353 ORTHO05D004989 4.2e-30 136.0 153 52.9
Atru.chr6.1923 Acer truncatum HOM05D004353 ORTHO05D004989 7.2e-30 135.2 101 63.4
Lalb_Chr10g0096191 Lupinus albus HOM05D004353 ORTHO05D004989 1.2e-29 134.4 244 39.3
Ca_17991_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 2.1e-29 133.7 234 37.6
Lalb_Chr02g0158251 Lupinus albus HOM05D004353 ORTHO05D004989 2.1e-29 133.7 187 46.0
Lalb_Chr21g0317861 Lupinus albus HOM05D004353 ORTHO05D004989 2.7e-29 133.3 234 41.9
FAN26G0137 Fragaria x ananassa HOM05D004353 ORTHO05D004989 3.6e-29 132.9 163 51.5
HanXRQChr10g0307981 Helianthus annuus HOM05D004353 ORTHO05D004989 3.6e-29 132.9 259 35.1
Nitab4.5_0001095g0110 Nicotiana tabacum HOM05D004353 ORTHO05D004989 7.9e-29 131.7 135 57.8
Gorai.012G140700 Gossypium raimondii HOM05D004353 ORTHO05D004989 1.0e-28 131.3 91 67.0
ECA248G0230 Erigeron canadensis HOM05D004353 ORTHO05D004989 1.8e-28 130.6 254 37.0
Lalb_Chr22g0353411 Lupinus albus HOM05D004353 ORTHO05D004989 6.7e-28 128.6 224 41.5
Carub.0005s2635 Capsella rubella HOM05D004353 ORTHO05D004989 1.1e-27 127.9 250 40.4
DCAR_005473 Daucus carota HOM05D004353 ORTHO05D004989 3.3e-27 126.3 178 47.2
SHI23072 Sapria himalayana HOM05D004353 ORTHO05D004989 2.8e-26 123.2 162 50.6
MSTRG.19791 Avicennia marina HOM05D004353 ORTHO05D004989 1.4e-25 120.9 99 57.6
SGA_v2.0_scaffold1G00163 Striga asiatica HOM05D004353 ORTHO05D004989 4.1e-25 119.4 190 42.6
ATR0743G161 Amborella trichopoda HOM05D004353 ORTHO05D004989 6.9e-25 118.6 177 44.1
Lsat_1_v5_gn_5_149741 Lactuca sativa HOM05D004353 ORTHO05D004989 4.5e-24 115.9 185 40.5
arahy.Tifrunner.gnm1.ann1.I4T7AK Arachis hypogaea HOM05D004353 ORTHO05D004989 4.2e-22 109.4 253 34.4
arahy.Tifrunner.gnm1.ann1.35HMJH Arachis hypogaea HOM05D004353 ORTHO05D004989 1.6e-21 107.5 228 35.5
Ca_02292_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 6.1e-21 105.5 189 39.7
Phvul.006G120600 Phaseolus vulgaris HOM05D004353 ORTHO05D004989 6.1e-21 105.5 227 37.9
CDE05G3235 Ceratophyllum demersum HOM05D004353 ORTHO05D004989 1.0e-20 104.8 147 46.3
VMungo0540G0595 Vigna mungo HOM05D004353 ORTHO05D004989 5.1e-20 102.4 193 39.9
TPR.G36930 Trifolium pratense HOM05D004353 ORTHO05D004989 8.8e-20 101.7 156 44.9
Lj2g0004083 Lotus japonicus HOM05D004353 ORTHO05D004989 1.1e-19 101.3 151 47.7
TPR.G8801 Trifolium pratense HOM05D004353 ORTHO05D004989 2.6e-19 100.1 166 45.2
CARHR169980 Cardamine hirsuta HOM05D004353 ORTHO05D004989 5.7e-19 99.0 184 42.9
HPP92_005597 Vanilla planifolia HOM05D004353 ORTHO05D004989 5.7e-19 99.0 194 38.7
Medtr6g012760 Medicago truncatula HOM05D004353 ORTHO05D004989 7.4e-19 98.6 172 44.8
Ca_13736_v3 Cicer arietinum L. HOM05D004353 ORTHO05D004989 1.3e-18 97.8 189 39.2
Psat1g079080 Pisum sativum HOM05D004353 ORTHO05D004989 1.7e-18 97.4 190 41.1
Glyma.09G032300 Glycine max HOM05D004353 ORTHO05D004989 3.7e-18 96.3 164 43.9
Medtr1g030860 Medicago truncatula HOM05D004353 ORTHO05D004989 6.3e-18 95.5 169 39.6
Dinv40298 Davidia involucrata HOM05D004353 ORTHO05D004989 8.2e-18 95.1 102 56.9
Zm00001eb246630 Zea mays HOM05D004353 ORTHO05D004989 1.1e-17 94.7 174 36.8
Medtr8g077030 Medicago truncatula HOM05D000149 ORTHO05D004989 2.4e-17 93.6 188 39.9
Os02g0606000 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 9.1e-17 91.7 184 38.6
Glyma.15G137300 Glycine max HOM05D004353 ORTHO05D004989 1.5e-16 90.9 167 41.9
HPP92_005578 Vanilla planifolia HOM05D004353 ORTHO05D004989 2.0e-16 90.5 168 41.7
Atru.chr4.262 Acer truncatum HOM05D004353 ORTHO05D004989 3.4e-16 89.7 93 63.4
Psat6g042920 Pisum sativum HOM05D004353 ORTHO05D004989 3.4e-16 89.7 173 37.6
Nn1g09685 Nelumbo nucifera HOM05D004353 ORTHO05D004989 2.9e-15 86.7 78 47.4
MD10G1168700 Malus domestica HOM05D004353 ORTHO05D004989 6.5e-15 85.5 120 44.2
C04p04620 Brassica napus HOM05D004353 ORTHO05D004989 8.5e-15 85.1 75 52.0
Zm00001eb184150 Zea mays HOM05D004353 ORTHO05D004989 8.5e-15 85.1 178 42.1
BcaB02g08913 Brassica carinata HOM05D004353 ORTHO05D004989 3.2e-14 83.2 175 34.3
AUR62039440 Chenopodium quinoa HOM05D004353 ORTHO05D004989 7.2e-14 82.0 67 53.7
Actinidia06605 Actinidia chinensis HOM05D004353 ORTHO05D004989 1.0e-12 78.2 226 32.3
BolC4t22093H Brassica oleracea HOM05D004353 ORTHO05D004989 1.8e-12 77.4 75 50.7
BcaC02g12375 Brassica carinata HOM05D004353 ORTHO05D004989 1.3e-10 71.2 65 49.2
Os04g0493300 Oryza sativa ssp. japonica HOM05D004353 ORTHO05D004989 1.7e-10 70.9 178 37.1


User provided reference genes

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