Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G114600 Populus trichocarpa HOM05D005512 ORTHO05D006716 1.3e-274 949.1 486 100.0
Sabra06G0089500 Salix brachista HOM05D005512 ORTHO05D006716 2.7e-240 835.1 486 90.5
Manes.09G059527 Manihot esculenta HOM05D005512 ORTHO05D006716 2.4e-135 486.5 517 58.0
Prupe.7G114400 Prunus persica HOM05D005512 ORTHO05D006716 2.1e-123 446.8 516 53.3
QL07p039701 Quercus lobata HOM05D005512 ORTHO05D006716 1.8e-119 433.7 508 52.2
Dinv21230 Davidia involucrata HOM05D005512 ORTHO05D006716 3.8e-117 426.0 488 52.9
Cfa016575 Carpinus fangiana HOM05D005512 ORTHO05D006716 5.5e-116 422.2 524 52.9
RcHm_v2.0_Chr3g0472661 Rosa chinensis HOM05D005512 ORTHO05D006716 6.1e-115 418.7 499 51.7
FvH4_6g18250 Fragaria vesca HOM05D005512 ORTHO05D006716 1.1e-111 407.9 511 49.9
Ciclev10013541m.g Citrus clementina HOM05D005512 ORTHO05D006716 1.8e-111 407.1 515 51.5
CiPaw.09G010900 Carya illinoinensis HOM05D005512 ORTHO05D006716 1.2e-110 404.4 504 51.8
FAN14G2179 Fragaria x ananassa HOM05D005512 ORTHO05D006716 7.8e-110 401.7 493 50.5
FAN09G0635 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.3e-109 401.0 515 49.9
TWI74G0342 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.7e-109 400.6 517 50.5
MD12G1022300 Malus domestica HOM05D005512 ORTHO05D006716 2.3e-109 400.2 512 49.6
FAN05G0202 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.1e-108 397.9 516 49.4
FAN02G2015 Fragaria x ananassa HOM05D005512 ORTHO05D006716 1.5e-108 397.5 501 50.5
CiPaw.10G007200 Carya illinoinensis HOM05D005512 ORTHO05D006716 2.8e-107 393.3 544 48.3
Haze_19571 Corylus avellana HOM05D005512 ORTHO05D006716 1.0e-106 391.3 519 51.3
Dinv31662 Davidia involucrata HOM05D005512 ORTHO05D006716 1.4e-106 391.0 482 51.0
TWI53G0330 Tripterygium wilfordii HOM05D005512 ORTHO05D006716 1.4e-106 391.0 513 49.7
FAN05G5667 Fragaria x ananassa HOM05D005512 ORTHO05D006716 4.4e-105 386.0 547 46.6
Cpa.g.sc5.51 Carica papaya HOM05D005512 ORTHO05D006716 5.4e-103 379.0 496 48.8
MD14G1019200 Malus domestica HOM05D005512 ORTHO05D006716 6.6e-101 372.1 485 48.2
FAN14G2174 Fragaria x ananassa HOM05D005512 ORTHO05D006716 3.6e-99 366.3 507 47.7
Thecc.05G085400 Theobroma cacao HOM05D005512 ORTHO05D006716 5.6e-92 342.4 409 51.3
Duzib128G1345 Durio zibethinus HOM05D005512 ORTHO05D006716 1.2e-89 334.7 630 40.3
CANSAT80G2511 Cannabis sativa HOM05D005512 ORTHO05D006716 3.2e-87 326.6 500 44.8
GSVIVG01033811001 Vitis vinifera HOM05D005512 ORTHO05D006716 3.1e-82 310.1 507 43.2
Atru.chr8.1592 Acer truncatum HOM05D005512 ORTHO05D006716 2.2e-80 303.9 364 52.7
COL.COLO4_29783 Corchorus olitorius HOM05D005512 ORTHO05D006716 8.4e-80 302.0 603 39.3
Duzib093G0027 Durio zibethinus HOM05D005512 ORTHO05D006716 3.0e-77 293.5 575 39.7
Gorai.009G405400 Gossypium raimondii HOM05D005512 ORTHO05D006716 3.0e-77 293.5 394 48.7
Gohir.D04G102100 Gossypium hirsutum HOM05D005512 ORTHO05D006716 3.9e-77 293.1 569 40.1
CsaV3_3G037090 Cucumis sativus L. HOM05D005512 ORTHO05D006716 5.1e-77 292.7 514 41.8
Sed0026834 Sechium edule HOM05D005512 ORTHO05D006716 8.7e-77 292.0 495 43.0
MELO3C009455.2 Cucumis melo HOM05D005512 ORTHO05D006716 1.1e-76 291.6 506 41.7
ClCG10G019160 Citrullus lanatus HOM05D005512 ORTHO05D006716 2.1e-75 287.3 511 41.5
A06p15670 Brassica napus HOM05D005512 ORTHO05D006716 1.5e-73 281.2 497 43.1
BraA06t24676Z Brassica rapa HOM05D005512 ORTHO05D006716 2.6e-73 280.4 497 42.9
Gohir.A04G064600 Gossypium hirsutum HOM05D005512 ORTHO05D006716 4.4e-73 279.6 395 46.6
Nn6g34983 Nelumbo nucifera HOM05D005512 ORTHO05D006716 4.4e-73 279.6 492 40.7
C05p17910 Brassica napus HOM05D005512 ORTHO05D006716 4.2e-71 273.1 494 42.9
CARHR020060 Cardamine hirsuta HOM05D005512 ORTHO05D006716 7.1e-71 272.3 487 40.9
Sp1g17370 Schrenkiella parvula HOM05D005512 ORTHO05D006716 1.2e-70 271.6 491 42.2
AT1G19490 Arabidopsis thaliana HOM05D005512 ORTHO05D006716 5.1e-69 266.2 494 39.7
Thhalv10009681m.g Eutrema salsugineum HOM05D005512 ORTHO05D006716 8.7e-69 265.4 480 41.9
Actinidia10388 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.5e-68 264.6 504 40.1
Glyma.19G193400 Glycine max HOM05D005512 ORTHO05D006716 9.6e-68 261.9 506 41.5
AL1G32240 Arabidopsis lyrata HOM05D005512 ORTHO05D006716 2.8e-67 260.4 487 40.2
Lj1g0021236 Lotus japonicus HOM05D005512 ORTHO05D006716 1.2e-65 255.0 477 40.3
Carub.0001s1906 Capsella rubella HOM05D005512 ORTHO05D006716 2.0e-65 254.2 491 40.3
Lalb_Chr20g0112081 Lupinus albus HOM05D005512 ORTHO05D006716 3.4e-65 253.4 500 38.2
arahy.Tifrunner.gnm1.ann1.EPRD9B Arachis hypogaea HOM05D005512 ORTHO05D006716 9.9e-65 251.9 507 38.1
BcaB03g14441 Brassica carinata HOM05D005512 ORTHO05D006716 2.4e-63 247.3 497 40.4
THA.LOC104804992 Tarenaya hassleriana HOM05D005512 ORTHO05D006716 3.2e-63 246.9 526 38.0
Aa31LG7G4150 Aethionema arabicum HOM05D005512 ORTHO05D006716 4.2e-63 246.5 491 39.3
Aqoxy4G02826 Aquilegia oxysepala HOM05D005512 ORTHO05D006716 7.9e-62 242.3 496 40.5
Actinidia08422 Actinidia chinensis HOM05D005512 ORTHO05D006716 1.3e-59 235.0 474 38.8
VMungo1383G0830 Vigna mungo HOM05D005512 ORTHO05D006716 4.0e-58 229.9 372 42.5
arahy.Tifrunner.gnm1.ann1.S7MLB0 Arachis hypogaea HOM05D005512 ORTHO05D006716 2.6e-57 227.3 511 36.2
PGR142G2241 Punica granatum HOM05D005512 ORTHO05D006716 4.5e-57 226.5 517 36.2
Hma1.2p1_0084F.1_g043460 Hydrangea macrophylla HOM05D005512 ORTHO05D006716 8.4e-56 222.2 519 38.5
Phvul.001G188300 Phaseolus vulgaris HOM05D005512 ORTHO05D006716 9.3e-55 218.8 370 40.5
PSO384G3501 Papaver somniferum HOM05D005512 ORTHO05D006716 4.6e-54 216.5 537 33.1
TAR623G0330 Trochodendron aralioides HOM05D005512 ORTHO05D006716 5.6e-52 209.5 305 48.5
Lj3A1000G63 Lonicera japonica HOM05D005512 ORTHO05D006716 2.8e-51 207.2 470 38.9
Rhsim03G0078100 Rhododendron simsii HOM05D005512 ORTHO05D006716 6.9e-50 202.6 401 39.2
Cc08_g02550 Coffea canephora HOM05D005512 ORTHO05D006716 1.7e-48 198.0 408 37.0
PSO339G0823 Papaver somniferum HOM05D005512 ORTHO05D006716 2.9e-48 197.2 462 33.1
Lj2A133G43 Lonicera japonica HOM05D005512 ORTHO05D006716 2.3e-45 187.6 472 36.4
TPR.G19527 Trifolium pratense HOM05D005512 ORTHO05D006716 3.9e-45 186.8 483 33.5
Medtr7g104190 Medicago truncatula HOM05D005512 ORTHO05D006716 1.9e-44 184.5 492 34.3
CSS0012282 Camellia sinensis var. sinensis HOM05D005512 ORTHO05D006716 7.4e-44 182.6 438 35.2
MSTRG.10360 Avicennia marina HOM05D005512 ORTHO05D006716 2.8e-43 180.6 378 35.2
Eucgr.K02060 Eucalyptus grandis HOM05D005512 ORTHO05D006716 4.8e-43 179.9 326 39.6
MBI17_g31309_MAGBIO Magnolia biondii HOM05D005512 ORTHO05D006716 1.2e-41 175.3 482 33.8
Oeu056908.1 Olea europaea HOM05D005512 ORTHO05D006716 2.6e-41 174.1 457 32.6
Nitab4.5_0005756g0030 Nicotiana tabacum HOM05D005512 ORTHO05D006716 1.4e-39 168.3 417 35.7
ECA238G0726 Erigeron canadensis HOM05D000284 ORTHO05D001229 5.5e-39 166.4 506 32.6
Psat3g034880 Pisum sativum HOM05D005512 ORTHO05D006716 5.5e-39 166.4 488 33.4
Solyc09g009760.1 Solanum lycopersicum HOM05D005512 ORTHO05D006716 7.9e-38 162.5 387 35.4
Nitab4.5_0000794g0130 Nicotiana tabacum HOM05D005512 ORTHO05D006716 3.0e-37 160.6 402 34.1
Sopen09g004520 Solanum pennellii HOM05D005512 ORTHO05D006716 8.8e-37 159.1 465 32.9
Peaxi162Scf00752g00310 Petunia axillaris HOM05D005512 ORTHO05D006716 1.5e-36 158.3 386 34.5
Peaxi162Scf36127g00005 Petunia axillaris HOM05D005512 ORTHO05D006716 1.5e-36 158.3 386 34.5
Nn2g14077 Nelumbo nucifera HOM05D005512 ORTHO05D006716 1.3e-35 155.2 236 48.3
Lsat_1_v5_gn_2_22561 Lactuca sativa HOM05D005512 ORTHO05D006716 1.1e-34 152.1 303 39.9
Sc20g0006160 Simmondsia chinensis HOM05D005512 ORTHO05D006716 2.4e-34 151.0 476 32.6
Nitab4.5_0011780g0020 Nicotiana tabacum HOM05D005512 ORTHO05D006716 6.5e-32 142.9 406 33.7
HanXRQChr16g0518951 Helianthus annuus HOM05D005512 ORTHO05D006716 1.4e-31 141.7 481 32.6
Glyma.03G193300 Glycine max HOM05D005512 ORTHO05D006716 1.9e-31 141.4 484 33.5
AUR62033525 Chenopodium quinoa HOM05D005512 ORTHO05D006716 7.9e-30 136.0 392 32.1
AUR62028570 Chenopodium quinoa HOM05D005512 ORTHO05D006716 1.0e-29 135.6 415 32.3
CAN.G397.46 Capsicum annuum HOM05D005512 ORTHO05D006716 3.3e-28 130.6 208 44.7
QL07p039646 Quercus lobata HOM05D005512 ORTHO05D006716 7.0e-26 122.9 336 31.8
EL10Ac7g16952 Beta vulgaris HOM05D005512 ORTHO05D006716 5.9e-25 119.8 211 38.9
Lsat_1_v5_gn_6_66321 Lactuca sativa HOM05D005512 ORTHO05D006716 7.7e-25 119.4 206 40.8
ATR0820G165 Amborella trichopoda HOM05D005512 ORTHO05D006716 8.5e-24 115.9 342 31.0
PGSC0003DMG400028166 Solanum tuberosum HOM05D005512 ORTHO05D006716 4.2e-23 113.6 288 33.3
Glyma.17G197300 Glycine max HOM05D005512 ORTHO05D006716 9.4e-23 112.5 135 50.4
DCAR_009151 Daucus carota HOM05D005512 ORTHO05D006716 3.0e-21 107.5 258 34.5
CDE08G0293 Ceratophyllum demersum HOM05D005512 ORTHO05D006716 3.9e-21 107.1 209 39.2
Glyma.19G084800 Glycine max HOM05D005512 ORTHO05D006716 8.8e-21 105.9 135 48.9
Hund14853 Selenicereus undatus HOM05D005512 ORTHO05D006716 1.5e-20 105.1 392 31.4
Solyc10g083380.2 Solanum lycopersicum HOM05D005512 ORTHO05D006716 4.4e-20 103.6 179 41.3
PGSC0003DMG402008883 Solanum tuberosum HOM05D005512 ORTHO05D006716 2.2e-19 101.3 339 31.9
CDE06G1506 Ceratophyllum demersum HOM05D000077 ORTHO05D002348 2.8e-19 100.9 384 30.2
Sopen10g032880 Solanum pennellii HOM05D005512 ORTHO05D006716 2.8e-19 100.9 179 40.8
DCAR_020766 Daucus carota HOM05D005512 ORTHO05D006716 4.8e-19 100.1 241 37.8
Os11g0154900 Oryza sativa ssp. japonica HOM05D005512 ORTHO05D006716 4.1e-18 97.1 285 34.7
Oeu040522.1 Olea europaea HOM05D005512 ORTHO05D006716 2.6e-17 94.4 359 30.9
Zm00001eb197160 Zea mays HOM05D005512 ORTHO05D006716 5.9e-17 93.2 94 59.6
HPP92_009043 Vanilla planifolia HOM05D005512 ORTHO05D006716 7.7e-17 92.8 241 36.5
Eucgr.K02061 Eucalyptus grandis HOM05D005512 ORTHO05D006716 2.9e-16 90.9 172 43.0
Zm00001eb406920 Zea mays HOM05D005512 ORTHO05D006716 2.9e-16 90.9 91 58.2
Atru.chr8.1591 Acer truncatum HOM05D005512 ORTHO05D006716 2.3e-13 81.3 52 75.0
Pp3c14_6250 Physcomitrium patens HOM05D005512 ORTHO05D006716 5.2e-13 80.1 116 47.4
Pp3c17_11650 Physcomitrium patens HOM05D005512 ORTHO05D006716 8.8e-13 79.3 157 40.8
BcaC05g25849 Brassica carinata HOM05D005512 ORTHO05D006716 2.8e-11 74.3 131 48.1
unitig_22.g5122 Utricularia gibba HOM05D005512 ORTHO05D006716 8.2e-11 72.8 159 39.6
Actinidia02438 Actinidia chinensis HOM05D005512 ORTHO05D006716 5.3e-10 70.1 127 40.2
SMO351G0354 Selaginella moellendorffii HOM05D005512 ORTHO05D006716 7.7e-09 66.2 84 54.8
AagrBONN_evm.TU.Sc2ySwM_117.2312 Anthoceros agrestis HOM05D005512 ORTHO05D006716 1.0e-08 65.9 164 33.5
Ca_08983_v3 Cicer arietinum L. HOM05D005512 ORTHO05D006716 1.3e-08 65.5 148 37.2
SalBow3G2059 Salvia bowleyana HOM05D005512 ORTHO05D006716 1.3e-08 65.5 190 31.6
Sc07g0005480 Simmondsia chinensis HOM05D005512 ORTHO05D006716 5.0e-08 63.5 168 36.3


User provided reference genes

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