Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G112600 Populus trichocarpa HOM05D007287 ORTHO05D008965 7.6e-118 427.2 215 100.0
Sabra06G0087700 Salix brachista HOM05D007287 ORTHO05D008965 2.4e-103 379.0 216 88.9
Potri.016G142100 Populus trichocarpa HOM05D007287 ORTHO05D008965 2.5e-97 359.0 215 86.0
Sabra04G0158300 Salix brachista HOM05D007287 ORTHO05D008965 1.2e-91 340.1 215 81.4
Manes.08G167300 Manihot esculenta HOM05D007287 ORTHO05D008965 1.6e-67 260.0 235 60.9
Manes.09G120600 Manihot esculenta HOM05D007287 ORTHO05D008965 1.4e-58 230.3 235 56.6
Thecc.04G001200 Theobroma cacao HOM05D007287 ORTHO05D008965 7.5e-49 198.0 218 51.8
TWI74G0480 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 7.5e-49 198.0 191 55.0
QL07p030582 Quercus lobata HOM05D007287 ORTHO05D008965 2.4e-47 193.0 212 52.8
QL07p031465 Quercus lobata HOM05D007287 ORTHO05D008965 2.4e-47 193.0 212 52.8
Haze_21214 Corylus avellana HOM05D007287 ORTHO05D008965 3.0e-45 186.0 220 50.0
Gohir.A02G000300 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.0e-45 185.3 218 49.5
Prupe.6G299000 Prunus persica HOM05D007287 ORTHO05D008965 6.6e-45 184.9 204 52.9
Dinv16928 Davidia involucrata HOM05D007287 ORTHO05D008965 5.6e-44 181.8 194 53.6
Gohir.D02G000600 Gossypium hirsutum HOM05D007287 ORTHO05D008965 9.5e-44 181.0 218 48.6
Gorai.005G001000 Gossypium raimondii HOM05D007287 ORTHO05D008965 1.2e-43 180.6 218 48.6
Cfa016991 Carpinus fangiana HOM05D007287 ORTHO05D008965 1.6e-43 180.3 218 49.5
Cpa.g.sc60.59 Carica papaya HOM05D007287 ORTHO05D008965 1.5e-41 173.7 218 50.9
Ciclev10012636m.g Citrus clementina HOM05D007287 ORTHO05D008965 2.6e-41 172.9 236 47.0
MD04G1179200 Malus domestica HOM05D007287 ORTHO05D008965 3.4e-41 172.6 203 50.7
FvH4_6g09290 Fragaria vesca HOM05D007287 ORTHO05D008965 1.9e-39 166.8 219 49.3
TWI77G0104 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 2.1e-38 163.3 228 44.3
vmacro08958 Vaccinium macrocarpon HOM05D007287 ORTHO05D008965 2.7e-38 162.9 195 51.3
FAN09G3442 Fragaria x ananassa HOM05D007287 ORTHO05D008965 3.5e-38 162.5 212 50.0
RcHm_v2.0_Chr3g0459671 Rosa chinensis HOM05D007287 ORTHO05D008965 1.3e-37 160.6 219 47.5
Duzib268G0768 Durio zibethinus HOM05D007287 ORTHO05D008965 2.3e-37 159.8 201 46.8
GSVIVG01029850001 Vitis vinifera HOM05D007287 ORTHO05D008965 8.6e-37 157.9 192 50.0
Rhsim04G0120200 Rhododendron simsii HOM05D007287 ORTHO05D008965 1.5e-36 157.1 211 47.9
Atru.chr8.50 Acer truncatum HOM05D007287 ORTHO05D008965 8.1e-35 151.4 241 43.6
Glyma.03G000900 Glycine max HOM05D007287 ORTHO05D008965 1.8e-34 150.2 191 47.1
Glyma.16G221800 Glycine max HOM05D007287 ORTHO05D008965 5.2e-34 148.7 192 46.9
Peaxi162Scf00732g00008 Petunia axillaris HOM05D007287 ORTHO05D008965 3.4e-33 146.0 191 46.6
CSS0027605 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 1.3e-32 144.1 198 47.5
Nitab4.5_0000356g0060 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.2e-32 143.3 191 44.5
Nitab4.5_0002785g0030 Nicotiana tabacum HOM05D007287 ORTHO05D008965 2.2e-32 143.3 191 45.5
CSS0006882 Camellia sinensis var. sinensis HOM05D007287 ORTHO05D008965 4.9e-32 142.1 198 47.0
PGR031G1010 Punica granatum HOM05D007287 ORTHO05D008965 1.1e-31 141.0 149 51.0
ClCG04G006100 Citrullus lanatus HOM05D007287 ORTHO05D008965 9.2e-31 137.9 236 39.0
Lj3g0024711 Lotus japonicus HOM05D007287 ORTHO05D008965 1.6e-30 137.1 204 44.1
ECA248G0550 Erigeron canadensis HOM05D007287 ORTHO05D008965 2.1e-30 136.7 192 46.4
Actinidia20808 Actinidia chinensis HOM05D007287 ORTHO05D008965 3.5e-30 136.0 189 45.5
CsaV3_4G027460 Cucumis sativus L. HOM05D007287 ORTHO05D008965 3.5e-30 136.0 236 37.7
Lsat_1_v5_gn_5_153761 Lactuca sativa HOM05D007287 ORTHO05D008965 6.0e-30 135.2 201 42.8
EL10Ac6g15481 Beta vulgaris HOM05D007287 ORTHO05D008965 1.1e-28 131.0 216 43.1
Phvul.010G060000 Phaseolus vulgaris HOM05D007287 ORTHO05D008965 1.9e-28 130.2 199 42.7
AUR62029815 Chenopodium quinoa HOM05D007287 ORTHO05D008965 2.5e-28 129.8 195 42.6
Oeu039292.1 Olea europaea HOM05D007287 ORTHO05D008965 4.3e-28 129.0 194 42.8
TWI53G0571 Tripterygium wilfordii HOM05D007287 ORTHO05D008965 4.3e-28 129.0 178 44.4
FAN02G3892 Fragaria x ananassa HOM05D001484 ORTHO05D008965 9.6e-28 127.9 197 43.7
AUR62006459 Chenopodium quinoa HOM05D007287 ORTHO05D008965 2.1e-27 126.7 195 43.1
VMungo0331G1821 Vigna mungo HOM05D007287 ORTHO05D008965 2.1e-27 126.7 199 41.2
Gohir.A05G415801 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.4e-26 124.0 220 39.5
Nn5g26760 Nelumbo nucifera HOM05D007287 ORTHO05D008965 1.4e-26 124.0 205 41.0
PGSC0003DMG400020867 Solanum tuberosum HOM05D007287 ORTHO05D008965 1.4e-26 124.0 191 40.8
Sc20g0007340 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.0e-25 120.2 200 40.0
Sc20g0007530 Simmondsia chinensis HOM05D007287 ORTHO05D008965 2.0e-25 120.2 200 40.0
Sed0017124 Sechium edule HOM05D007287 ORTHO05D008965 7.6e-25 118.2 243 35.0
Eucgr.K01309 Eucalyptus grandis HOM05D007287 ORTHO05D008965 2.2e-24 116.7 197 39.1
CANSAT01G2619 Cannabis sativa HOM05D007287 ORTHO05D008965 2.9e-24 116.3 194 36.1
MBI15_g22001_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 4.9e-24 115.5 206 37.4
Gohir.A05G415501 Gossypium hirsutum HOM05D007287 ORTHO05D008965 1.9e-23 113.6 215 38.6
Ah.02g119260 Amaranthus hybridus HOM05D007287 ORTHO05D008965 3.2e-23 112.8 217 39.6
HanXRQChr11g0345021 Helianthus annuus HOM05D007287 ORTHO05D008965 7.1e-23 111.7 191 41.9
MELO3C025269.2 Cucumis melo HOM05D007287 ORTHO05D008965 9.3e-23 111.3 217 35.0
TAR633G2304 Trochodendron aralioides HOM05D007287 ORTHO05D008965 4.6e-22 109.0 229 38.0
Sopen09g026010 Solanum pennellii HOM05D007287 ORTHO05D008965 1.0e-21 107.8 195 40.0
CAN.G616.24 Capsicum annuum HOM05D007287 ORTHO05D008965 3.9e-21 105.9 187 40.1
Solyc09g031900.4 Solanum lycopersicum HOM05D007287 ORTHO05D008965 3.9e-21 105.9 196 38.8
PSO384G1025 Papaver somniferum HOM05D007287 ORTHO05D008965 5.1e-21 105.5 229 34.5
MBI15_g05588_MAGBIO Magnolia biondii HOM05D007287 ORTHO05D008965 1.5e-20 104.0 206 35.9
PSO339G4161 Papaver somniferum HOM05D007287 ORTHO05D008965 1.5e-20 104.0 238 34.5
MSTRG.26833 Avicennia marina HOM05D007287 ORTHO05D008965 2.5e-20 103.2 202 36.6
Aqoxy2G01629 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 6.2e-19 98.6 221 33.0
arahy.Tifrunner.gnm1.ann1.HN5ZMV Arachis hypogaea HOM05D007287 ORTHO05D008965 3.1e-18 96.3 200 37.5
TPR.G30730 Trifolium pratense HOM05D007287 ORTHO05D008965 5.3e-18 95.5 212 34.4
arahy.Tifrunner.gnm1.ann1.K8RLSB Arachis hypogaea HOM05D007287 ORTHO05D008965 6.9e-18 95.1 200 37.5
Medtr8g005070 Medicago truncatula HOM05D007287 ORTHO05D008965 6.9e-18 95.1 211 36.5
DCAR_014750 Daucus carota HOM05D007287 ORTHO05D008965 9.0e-18 94.7 199 37.7
Eucgr.A00853 Eucalyptus grandis HOM05D007287 ORTHO05D008965 4.5e-17 92.4 140 40.0
VMungo1127G2237 Vigna mungo HOM05D007287 ORTHO05D008965 1.4e-15 87.4 197 34.5
Lalb_Chr13g0290321 Lupinus albus HOM05D007287 ORTHO05D008965 1.3e-13 80.9 234 32.5
Ca_18906_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 1.5e-12 77.4 207 35.3
VMungo0464G2164 Vigna mungo HOM05D007287 ORTHO05D008965 2.5e-12 76.6 129 40.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.3e-12 76.3 147 34.7
Cc06_g00120 Coffea canephora HOM05D007287 ORTHO05D008965 3.3e-12 76.3 158 38.0
Gohir.A12G000800 Gossypium hirsutum HOM05D007287 ORTHO05D008965 5.6e-12 75.5 125 40.0
HPP92_015439 Vanilla planifolia HOM05D007287 ORTHO05D008965 1.3e-11 74.3 186 32.8
CDE07G0622 Ceratophyllum demersum HOM05D007287 ORTHO05D008965 1.6e-11 73.9 191 30.4
DCAR_023246 Daucus carota HOM05D007287 ORTHO05D008965 2.8e-11 73.2 150 36.0
Os11g0119900 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 4.8e-11 72.4 215 30.7
Aqoxy1G02348 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 4.0e-10 69.3 214 29.9
Os12g0119700 Oryza sativa ssp. japonica HOM05D007287 ORTHO05D008965 5.3e-10 68.9 215 30.2
Zm00001eb078960 Zea mays HOM05D007287 ORTHO05D008965 9.0e-10 68.2 141 31.9
COL.COLO4_12535 Corchorus olitorius HOM05D007287 ORTHO05D008965 1.5e-09 67.4 155 33.5
THA.LOC104806658 Tarenaya hassleriana HOM05D009615 ORTHO05D011760 1.5e-09 67.4 130 37.7
HanXRQChr10g0286721 Helianthus annuus HOM05D007287 ORTHO05D008965 3.4e-09 66.2 141 34.0
Psat2g191120 Pisum sativum HOM05D007287 ORTHO05D008965 7.6e-09 65.1 188 30.3
Aqoxy1G03140 Aquilegia oxysepala HOM05D007287 ORTHO05D008965 1.7e-08 63.9 135 33.3
BraA07t29594Z Brassica rapa HOM05D009615 ORTHO05D011760 6.4e-08 62.0 86 43.0
A07p18870 Brassica napus HOM05D009615 ORTHO05D011760 1.4e-07 60.8 86 43.0
Thhalv10017369m.g Eutrema salsugineum HOM05D009615 ORTHO05D011760 1.4e-07 60.8 83 47.0
Lalb_Chr12g0210711 Lupinus albus HOM05D007287 ORTHO05D008965 3.2e-07 59.7 86 44.2
Sp4g11120 Schrenkiella parvula HOM05D009615 ORTHO05D011760 3.2e-07 59.7 143 35.0
CARHR121260 Cardamine hirsuta HOM05D009615 ORTHO05D011760 9.3e-07 58.2 142 32.4
AT2G28330 Arabidopsis thaliana HOM05D009615 ORTHO05D011760 1.2e-06 57.8 144 33.3
Actinidia32578 Actinidia chinensis HOM05D007287 ORTHO05D008965 1.6e-06 57.4 82 45.1
BolC4t23815H Brassica oleracea HOM05D009615 ORTHO05D011760 1.6e-06 57.4 89 41.6
Ca_18907_v3 Cicer arietinum L. HOM05D007287 ORTHO05D008965 7.9e-06 55.1 112 39.3


User provided reference genes

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