Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G110400 Populus trichocarpa HOM05D006830 ORTHO05D008119 3.7e-152 542.3 448 100.0
Potri.016G139000 Populus trichocarpa HOM05D006830 ORTHO05D008119 1.1e-90 338.2 458 79.3
Sabra04G0154900 Salix brachista HOM05D006830 ORTHO05D008119 3.1e-74 283.5 465 67.5
Manes.08G169600 Manihot esculenta HOM05D006830 ORTHO05D008119 4.0e-74 283.1 235 66.4
Thecc.04G149300 Theobroma cacao HOM05D006830 ORTHO05D008119 5.5e-55 219.5 235 54.5
QL07p031724 Quercus lobata HOM05D006830 ORTHO05D008119 5.7e-52 209.5 255 49.4
Cfa017009 Carpinus fangiana HOM05D006830 ORTHO05D008119 7.9e-46 189.1 262 46.9
FAN09G0658 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.0e-45 188.7 269 45.0
Prupe.6G296200 Prunus persica HOM05D006830 ORTHO05D008119 1.4e-45 188.3 242 47.1
RcHm_v2.0_Chr3g0460131 Rosa chinensis HOM05D006830 ORTHO05D008119 1.4e-45 188.3 258 46.9
MD12G1191100 Malus domestica HOM05D006830 ORTHO05D008119 3.3e-44 183.7 241 46.5
TWI77G0580 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 7.4e-44 182.6 242 47.9
Ciclev10011645m.g Citrus clementina HOM05D006830 ORTHO05D008119 9.7e-44 182.2 222 50.0
Haze_21197 Corylus avellana HOM05D006830 ORTHO05D008119 2.8e-43 180.6 254 47.6
Lj1g0026994 Lotus japonicus HOM05D006830 ORTHO05D008119 5.3e-42 176.4 247 44.1
GSVIVG01025871001 Vitis vinifera HOM05D006830 ORTHO05D008119 6.9e-42 176.0 228 48.2
arahy.Tifrunner.gnm1.ann1.QV5EPW Arachis hypogaea HOM05D006830 ORTHO05D008119 1.2e-41 175.3 251 45.4
Cpa.g.sc72.63 Carica papaya HOM05D006830 ORTHO05D008119 1.2e-41 175.3 220 50.9
FAN05G1111 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.0e-41 174.5 250 46.0
FvH4_6g09531 Fragaria vesca HOM05D006830 ORTHO05D008119 2.6e-41 174.1 250 45.2
FAN14G4211 Fragaria x ananassa HOM05D006830 ORTHO05D008119 2.6e-41 174.1 250 45.2
arahy.Tifrunner.gnm1.ann1.E2XN58 Arachis hypogaea HOM05D006830 ORTHO05D008119 1.7e-40 171.4 248 44.0
Atru.chr8.80 Acer truncatum HOM05D006830 ORTHO05D008119 1.4e-39 168.3 214 50.0
Eucgr.A00784 Eucalyptus grandis HOM05D006830 ORTHO05D008119 2.5e-39 167.5 233 44.6
TAR636G3618 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.7e-38 164.1 245 46.1
PGR031G0539 Punica granatum HOM05D006830 ORTHO05D008119 3.6e-38 163.7 245 46.1
MBI15_g32284_MAGBIO Magnolia biondii HOM05D006830 ORTHO05D008119 4.7e-38 163.3 255 44.7
Sc20g0007150 Simmondsia chinensis HOM05D006830 ORTHO05D008119 6.1e-38 162.9 243 44.4
TWI74G0093 Tripterygium wilfordii HOM05D006830 ORTHO05D008119 3.9e-37 160.2 231 46.8
Gorai.006G236000 Gossypium raimondii HOM05D006830 ORTHO05D008119 6.7e-37 159.5 209 52.2
Thhalv10016585m.g Eutrema salsugineum HOM05D006830 ORTHO05D008119 1.5e-36 158.3 233 45.9
Ah.08g209170 Amaranthus hybridus HOM05D006830 ORTHO05D008119 1.3e-35 155.2 247 42.5
FAN02G1118 Fragaria x ananassa HOM05D006830 ORTHO05D008119 1.7e-35 154.8 239 46.0
Gohir.D09G215500 Gossypium hirsutum HOM05D006830 ORTHO05D008119 1.7e-35 154.8 208 51.4
AUR62006437 Chenopodium quinoa HOM05D006830 ORTHO05D008119 2.2e-35 154.5 247 41.3
Nitab4.5_0000048g0180 Nicotiana tabacum HOM05D006830 ORTHO05D008119 2.2e-35 154.5 250 40.4
EL10Ac7g17129 Beta vulgaris HOM05D006830 ORTHO05D008119 2.8e-35 154.1 245 42.0
Medtr7g073700 Medicago truncatula HOM05D006830 ORTHO05D008119 3.7e-35 153.7 236 42.8
AUR62029792 Chenopodium quinoa HOM05D006830 ORTHO05D008119 4.8e-35 153.3 246 41.5
Carub.0004s2057 Capsella rubella HOM05D006830 ORTHO05D008119 1.8e-34 151.4 226 45.1
Actinidia29020 Actinidia chinensis HOM05D006830 ORTHO05D008119 3.1e-34 150.6 270 39.3
Sp4g20920 Schrenkiella parvula HOM05D006830 ORTHO05D008119 7.0e-34 149.4 234 44.0
Lj2A57T75 Lonicera japonica HOM05D006830 ORTHO05D008119 9.1e-34 149.1 247 40.9
Nn5g26811 Nelumbo nucifera HOM05D006830 ORTHO05D008119 9.1e-34 149.1 230 45.2
COL.COLO4_21252 Corchorus olitorius HOM05D006830 ORTHO05D008119 2.6e-33 147.5 208 47.6
Nitab4.5_0001876g0080 Nicotiana tabacum HOM05D006830 ORTHO05D008119 4.5e-33 146.7 271 36.5
BraA03t11375Z Brassica rapa HOM05D006830 ORTHO05D008119 7.7e-33 146.0 239 42.7
Duzib268G1795 Durio zibethinus HOM05D006830 ORTHO05D008119 7.7e-33 146.0 188 48.4
A03p21400 Brassica napus HOM05D006830 ORTHO05D008119 1.3e-32 145.2 239 42.7
C03p25270 Brassica napus HOM05D006830 ORTHO05D008119 2.2e-32 144.4 235 43.0
BolC3t14921H Brassica oleracea HOM05D006830 ORTHO05D008119 2.2e-32 144.4 235 43.0
Dinv16956 Davidia involucrata HOM05D006830 ORTHO05D008119 3.2e-31 140.6 258 37.2
Gohir.A09G213672 Gossypium hirsutum HOM05D006830 ORTHO05D008119 5.5e-31 139.8 191 49.2
CSS0029082 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.6e-30 138.3 265 38.5
ECA248G1589 Erigeron canadensis HOM05D006830 ORTHO05D008119 2.7e-30 137.5 252 41.7
Rhsim05G0232400 Rhododendron simsii HOM05D006830 ORTHO05D008119 3.6e-30 137.1 254 39.4
Duzib151G0823 Durio zibethinus HOM05D006830 ORTHO05D008119 1.4e-29 135.2 178 50.0
Oeu030099.2 Olea europaea HOM05D006830 ORTHO05D008119 3.0e-29 134.0 248 40.7
Solyc09g016940.4 Solanum lycopersicum HOM05D006830 ORTHO05D008119 3.0e-29 134.0 261 38.7
BcaC01g05528 Brassica carinata HOM05D006830 ORTHO05D008119 4.0e-29 133.7 228 42.5
Migut.J00020 Erythranthe guttata HOM05D006830 ORTHO05D008119 4.0e-29 133.7 253 41.5
Sopen09g010200 Solanum pennellii HOM05D006830 ORTHO05D008119 5.2e-29 133.3 261 38.3
Glyma.18G216100 Glycine max HOM05D006830 ORTHO05D008119 1.5e-28 131.7 199 44.2
Lalb_Chr01g0023901 Lupinus albus HOM05D006830 ORTHO05D008119 2.6e-28 131.0 188 45.2
Oeu026939.4 Olea europaea HOM05D006830 ORTHO05D008119 3.3e-28 130.6 267 37.8
THA.LOC104806205 Tarenaya hassleriana HOM05D006830 ORTHO05D008119 4.4e-28 130.2 241 39.0
Peaxi162Scf00732g00253 Petunia axillaris HOM05D006830 ORTHO05D008119 9.7e-28 129.0 228 38.2
MELO3C009096.2 Cucumis melo HOM05D006830 ORTHO05D008119 2.8e-27 127.5 251 36.3
TPR.G24307 Trifolium pratense HOM05D006830 ORTHO05D008119 3.7e-27 127.1 178 44.9
Glyma.09G273000 Glycine max HOM05D006830 ORTHO05D008119 6.3e-27 126.3 174 45.4
SGA_v2.0_scaffold85G26596 Striga asiatica HOM05D006830 ORTHO05D008119 3.1e-26 124.0 255 32.5
MSTRG.18932 Avicennia marina HOM05D006830 ORTHO05D008119 7.0e-26 122.9 317 32.8
CARHR133260 Cardamine hirsuta HOM05D006830 ORTHO05D008119 9.1e-26 122.5 237 38.0
Cc06_g00270 Coffea canephora HOM05D002857 ORTHO05D008347 9.1e-26 122.5 269 33.1
CsaV3_3G032990 Cucumis sativus L. HOM05D006830 ORTHO05D008119 1.2e-25 122.1 253 34.8
Hund03691 Selenicereus undatus HOM05D006830 ORTHO05D008119 2.7e-25 120.9 249 38.2
C03p25310 Brassica napus HOM05D006830 ORTHO05D008119 1.0e-24 119.0 229 37.6
Hma1.2p1_0537F.1_g174220 Hydrangea macrophylla HOM05D006830 ORTHO05D008119 2.9e-24 117.5 292 35.3
VMungo1383G1745 Vigna mungo HOM05D006830 ORTHO05D008119 3.8e-24 117.1 250 34.4
BcaB01g03674 Brassica carinata HOM05D006830 ORTHO05D008119 5.0e-24 116.7 234 39.3
AT2G38580 Arabidopsis thaliana HOM05D006830 ORTHO05D008119 1.5e-23 115.2 187 45.5
Hund19745 Selenicereus undatus HOM05D006830 ORTHO05D008119 1.9e-23 114.8 227 37.4
AL4G35860 Arabidopsis lyrata HOM05D006830 ORTHO05D008119 4.2e-23 113.6 163 48.5
vmacro20384 Vaccinium macrocarpon HOM05D006830 ORTHO05D008119 5.5e-23 113.2 248 38.7
DCAR_023967 Daucus carota HOM05D006830 ORTHO05D008119 2.7e-22 110.9 271 33.6
Ca_07782_v3 Cicer arietinum L. HOM05D006830 ORTHO05D008119 1.0e-21 109.0 171 42.1
ClCG10G022820 Citrullus lanatus HOM05D006830 ORTHO05D008119 4.4e-20 103.6 296 31.8
HanXRQChr01g0000521 Helianthus annuus HOM05D006830 ORTHO05D008119 2.8e-19 100.9 208 39.4
CDE04G1359 Ceratophyllum demersum HOM05D006830 ORTHO05D008119 4.8e-19 100.1 268 32.5
CSS0030660 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 5.4e-18 96.7 155 39.4
Sed0004389 Sechium edule HOM05D006830 ORTHO05D008119 7.0e-18 96.3 200 39.0
Phvul.008G080600 Phaseolus vulgaris HOM05D006830 ORTHO05D008119 3.5e-17 94.0 155 41.3
PSO384G2539 Papaver somniferum HOM05D006830 ORTHO05D008119 3.8e-16 90.5 233 33.0
CANSAT60G0001 Cannabis sativa HOM05D006830 ORTHO05D008119 1.6e-14 85.1 125 41.6
PSO339G2021 Papaver somniferum HOM05D006830 ORTHO05D008119 1.6e-14 85.1 85 54.1
unitig_22.g6617 Utricularia gibba HOM05D006830 ORTHO05D008119 1.6e-14 85.1 251 30.3
CANSAT21G1452 Cannabis sativa HOM05D006830 ORTHO05D008119 6.1e-14 83.2 125 40.8
CSS0037917 Camellia sinensis var. sinensis HOM05D006830 ORTHO05D008119 1.2e-12 79.0 193 33.7
HPP92_012572 Vanilla planifolia HOM05D006830 ORTHO05D008119 3.1e-10 70.9 220 29.5
Actinidia11494 Actinidia chinensis HOM05D040087 ORTHO05D008119 9.2e-10 69.3 91 45.1
BolC3t14925H Brassica oleracea HOM05D006830 ORTHO05D008119 1.2e-09 68.9 101 43.6
Lsat_1_v5_gn_5_151701 Lactuca sativa HOM05D006830 ORTHO05D008119 2.7e-09 67.8 61 57.4
Os03g0333000 Oryza sativa ssp. japonica HOM05D006830 ORTHO05D008119 2.3e-08 64.7 61 50.8
HPP92_012541 Vanilla planifolia HOM05D006830 ORTHO05D008119 2.9e-08 64.3 60 55.0
Zm00001eb015900 Zea mays HOM05D006830 ORTHO05D008119 8.6e-08 62.8 59 52.5
Aa31LG5G23390 Aethionema arabicum HOM05D006830 ORTHO05D008119 5.6e-07 60.1 61 45.9
ATR1127G221 Amborella trichopoda HOM05D006830 ORTHO05D008119 5.6e-07 60.1 121 34.7
TAR624G0244 Trochodendron aralioides HOM05D006830 ORTHO05D008119 2.8e-06 57.8 64 54.7


User provided reference genes

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