Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 0.0e+00 1701.0 896 100.0
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 0.0e+00 1537.3 896 91.4
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 0.0e+00 1416.7 897 84.3
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 0.0e+00 1404.8 897 84.2
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1267.3 901 76.8
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 0.0e+00 1264.6 900 75.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 0.0e+00 1195.6 895 73.1
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1187.9 896 72.7
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 0.0e+00 1157.5 896 72.4
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 0.0e+00 1149.4 903 70.7
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 0.0e+00 1144.8 899 69.5
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 0.0e+00 1142.9 902 70.7
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 0.0e+00 1136.3 896 70.1
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 0.0e+00 1104.7 895 69.7
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 0.0e+00 1097.8 903 66.4
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 0.0e+00 1095.1 907 68.4
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1080.5 907 65.8
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 0.0e+00 1076.6 907 65.6
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 0.0e+00 1075.8 864 70.1
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.3e-309 1065.4 909 64.8
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 3.9e-309 1064.7 909 64.7
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 7.4e-308 1060.4 902 68.1
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 4.1e-306 1054.7 902 65.5
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 1.7e-304 1049.3 907 65.9
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 1.7e-304 1049.3 914 63.9
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.9e-304 1048.5 891 64.4
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.5e-304 1047.0 907 64.3
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-303 1046.6 907 65.9
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 2.5e-303 1045.4 905 65.4
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.2e-303 1044.6 907 64.2
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 1.0e-301 1040.0 904 64.6
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.4e-301 1039.6 844 68.7
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 5.7e-300 1034.2 908 63.3
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 4.5e-297 1024.6 902 66.0
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 6.5e-296 1020.8 904 64.3
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.4e-293 1013.1 898 65.8
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.4e-293 1013.1 890 65.6
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.8e-293 1012.7 908 64.3
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 2.3e-293 1012.3 902 64.5
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.1e-292 1010.0 890 65.7
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.0e-292 1009.2 890 65.4
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 5.7e-292 1007.7 896 63.5
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 7.4e-292 1007.3 918 64.4
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 1.7e-291 1006.1 892 65.5
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 3.7e-291 1005.0 803 70.2
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 3.7e-291 1005.0 918 63.9
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 4.8e-291 1004.6 777 71.9
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 3.1e-290 1001.9 893 64.6
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 3.1e-290 1001.9 910 63.6
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 9.1e-290 1000.3 912 64.1
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 9.1e-290 1000.3 912 64.1
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.6e-289 999.6 910 63.5
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 2.6e-289 998.8 917 64.6
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 1.0e-288 996.9 889 63.7
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.1e-287 993.4 876 63.0
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.5e-287 992.3 907 63.6
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 3.2e-287 991.9 904 63.8
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 2.1e-286 989.2 886 63.9
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 2.1e-286 989.2 919 63.2
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 2.3e-285 985.7 902 64.0
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 4.0e-285 984.9 910 61.9
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-283 979.9 909 63.1
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 2.2e-283 979.2 901 63.6
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.1e-282 976.9 897 64.4
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 4.1e-282 974.9 900 63.4
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 3.2e-279 965.3 901 62.7
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 2.7e-278 962.2 798 68.4
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 2.7e-278 962.2 867 64.0
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 3.6e-278 961.8 901 62.3
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 1.0e-277 960.3 798 68.3
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 8.8e-277 957.2 889 59.5
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 2.2e-275 952.6 901 62.7
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.8e-275 952.2 902 62.2
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.7e-275 951.8 903 60.5
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.4e-274 949.9 902 62.0
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 5.0e-272 941.4 862 63.1
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 7.2e-271 937.6 885 61.0
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 2.2e-267 926.0 899 60.8
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 9.2e-266 920.6 904 61.6
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 9.5e-263 910.6 900 60.8
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 9.8e-260 900.6 863 60.7
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 2.2e-259 899.4 911 58.4
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.4e-258 896.7 915 58.7
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 3.9e-256 888.6 902 58.4
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 5.0e-256 888.3 866 60.9
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 5.0e-256 888.3 902 58.2
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.9e-251 872.5 912 57.1
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 9.2e-250 867.5 908 60.0
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 1.2e-244 850.5 905 58.8
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 9.8e-244 847.4 899 58.8
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.6e-241 838.6 902 57.6
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 8.6e-240 834.3 773 60.7
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 8.6e-240 834.3 868 58.9
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 1.1e-239 833.9 905 56.4
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 2.8e-238 829.3 904 56.3
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.6e-238 828.9 888 57.9
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 8.9e-237 824.3 872 59.1
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 5.8e-236 821.6 908 55.2
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.2e-235 819.7 909 57.8
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 3.9e-232 808.9 889 57.7
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 8.1e-230 801.2 882 56.9
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 1.8e-229 800.0 865 57.7
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 4.0e-229 798.9 884 55.2
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 4.0e-229 798.9 906 56.0
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 5.2e-229 798.5 862 58.4
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 1.5e-228 797.0 896 55.7
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 2.0e-228 796.6 884 55.9
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 1.1e-226 790.8 889 57.0
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 1.9e-226 790.0 889 57.0
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 3.5e-225 785.8 903 55.7
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 2.8e-222 776.2 844 57.8
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 4.8e-222 775.4 870 57.9
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.7e-219 766.9 835 56.5
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 3.5e-217 759.2 881 55.2
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 3.0e-216 756.1 729 63.1
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 1.3e-214 750.7 860 54.9
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 1.3e-214 750.7 906 52.0
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 8.1e-214 748.0 881 55.4
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 2.0e-212 743.4 884 54.4
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 2.0e-212 743.4 836 52.6
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 5.8e-212 741.9 871 54.0
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 5.5e-210 735.3 847 55.6
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.6e-206 723.8 903 52.0
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 2.1e-206 723.4 854 53.2
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 6.9e-205 718.4 884 53.7
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 1.2e-204 717.6 884 53.8
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 1.0e-203 714.5 884 53.4
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 2.2e-203 713.4 871 53.8
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.5e-202 709.9 800 56.2
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 2.7e-201 706.4 871 53.4
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 5.1e-200 702.2 907 49.9
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 6.9e-197 691.8 761 57.6
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 2.2e-195 686.8 884 52.0
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.4e-194 684.1 910 50.1
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 2.5e-194 683.3 910 50.3
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 4.3e-191 672.5 884 52.0
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 4.3e-191 672.5 905 51.5
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 6.9e-189 665.2 934 49.7
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 1.7e-187 660.6 765 54.8
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 3.3e-183 646.4 905 50.3
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 5.7e-183 645.6 908 50.1
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 5.3e-181 639.0 777 51.9
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 4.2e-178 629.4 875 50.1
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.4e-165 587.0 916 46.5
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 2.9e-155 553.5 845 47.5
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 3.8e-155 553.1 889 47.1
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 6.1e-153 545.8 749 48.6
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 8.3e-150 535.4 842 44.3
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 8.9e-136 488.8 454 62.1
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 7.0e-133 479.2 753 47.5
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 3.9e-131 473.4 911 40.9
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 9.5e-122 442.2 642 50.0
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 4.7e-121 439.9 886 42.0
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 2.6e-119 434.1 829 42.6
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 2.7e-116 424.1 927 40.0
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 3.9e-115 420.2 405 61.2
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 8.7e-115 419.1 929 39.6
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 2.1e-113 414.5 924 39.0
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.4e-112 411.8 905 38.3
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.7e-110 404.8 770 39.9
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.9e-107 393.7 931 39.3
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 3.3e-106 390.6 929 39.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.2e-92 345.5 881 36.3
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 2.9e-86 324.3 316 55.4
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.7e-83 313.2 1005 33.4
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 5.9e-79 300.1 901 35.4
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.9e-68 263.1 404 49.5
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.3e-67 261.5 378 46.8
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 1.3e-65 255.8 511 40.5
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 1.2e-63 249.2 361 44.9
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 1.7e-62 245.4 356 44.7
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 1.4e-59 235.7 274 48.9
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 1.4e-56 225.7 262 61.5
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 4.5e-55 220.7 258 51.2
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.7e-52 211.5 353 40.5
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 2.3e-51 208.4 489 36.2
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.7e-51 206.8 905 32.2
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 6.7e-51 206.8 301 42.9
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 7.2e-45 186.8 176 54.5
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 6.1e-44 183.7 97 96.9
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.6e-42 178.3 817 27.3
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 3.5e-39 167.9 109 77.1
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 9.5e-21 106.7 275 32.4
SEGI_26240 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 6.4e-09 67.4 318 26.7
unitig_27.g24881 Utricularia gibba HOM05D003671 ORTHO05D004285 5.1e-06 57.8 37 64.9


User provided reference genes

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