Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G100200 Populus trichocarpa HOM05D003907 ORTHO05D004819 1.2e-281 972.6 510 100.0
Potri.016G116200 Populus trichocarpa HOM05D003907 ORTHO05D004819 5.4e-271 937.2 510 95.9
Sabra16G0111700 Salix brachista HOM05D003907 ORTHO05D004819 1.2e-267 926.0 510 94.3
Manes.09G104800 Manihot esculenta HOM05D003907 ORTHO05D004819 2.3e-266 921.8 510 93.1
Manes.09G105700 Manihot esculenta HOM05D003907 ORTHO05D004819 3.4e-265 917.9 510 92.5
TWI53G0466 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 7.5e-265 916.8 510 92.2
TWI74G1106 Tripterygium wilfordii HOM05D003907 ORTHO05D004819 5.4e-263 910.6 510 91.4
GSVIVG01033959001 Vitis vinifera HOM05D003907 ORTHO05D004819 2.0e-262 908.7 510 90.8
Gohir.D09G160800 Gossypium hirsutum HOM05D003907 ORTHO05D004819 6.0e-262 907.1 511 91.6
Ciclev10011517m.g Citrus clementina HOM05D003907 ORTHO05D004819 7.8e-262 906.7 511 91.4
Gorai.006G182500 Gossypium raimondii HOM05D003907 ORTHO05D004819 1.7e-261 905.6 511 91.4
Duzib106G0096 Durio zibethinus HOM05D003907 ORTHO05D004819 2.3e-261 905.2 511 91.2
Thecc.05G016000 Theobroma cacao HOM05D003907 ORTHO05D004819 3.0e-261 904.8 511 92.4
Gohir.A09G165200 Gossypium hirsutum HOM05D003907 ORTHO05D004819 6.6e-261 903.7 511 91.2
CsaV3_4G026280 Cucumis sativus L. HOM05D003907 ORTHO05D004819 1.5e-260 902.5 510 90.0
ClCG04G006990 Citrullus lanatus HOM05D003907 ORTHO05D004819 1.9e-260 902.1 510 90.0
MSTRG.10218 Avicennia marina HOM05D003907 ORTHO05D004819 9.5e-260 899.8 510 90.0
Glyma.18G200800 Glycine max HOM05D003907 ORTHO05D004819 9.5e-260 899.8 510 91.0
Dinv23105 Davidia involucrata HOM05D003907 ORTHO05D004819 1.2e-259 899.4 510 90.4
TAR636G2600 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.2e-259 899.4 510 90.0
Actinidia05367 Actinidia chinensis HOM05D003907 ORTHO05D004819 2.1e-259 898.7 512 90.8
Prupe.6G277300 Prunus persica HOM05D003907 ORTHO05D004819 2.1e-259 898.7 510 90.4
CiPaw.09G209200 Carya illinoinensis HOM05D003907 ORTHO05D004819 4.7e-259 897.5 510 91.4
Glyma.07G149900 Glycine max HOM05D003907 ORTHO05D004819 1.8e-258 895.6 510 90.4
THA.LOC104823300 Tarenaya hassleriana HOM05D003907 ORTHO05D004819 1.8e-258 895.6 510 90.2
TAR633G0126 Trochodendron aralioides HOM05D003907 ORTHO05D004819 1.8e-258 895.6 510 90.0
Nn2g11497 Nelumbo nucifera HOM05D003907 ORTHO05D004819 3.1e-258 894.8 510 89.6
Cfa017208 Carpinus fangiana HOM05D003907 ORTHO05D004819 5.2e-258 894.0 510 90.6
MSTRG.26811 Avicennia marina HOM05D003907 ORTHO05D004819 6.8e-258 893.6 510 90.0
Aqoxy4G02574 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 1.5e-257 892.5 511 89.0
CANSAT35G0110 Cannabis sativa HOM05D003907 ORTHO05D004819 1.5e-257 892.5 510 90.4
Carub.0006s0037 Capsella rubella HOM05D003907 ORTHO05D004819 4.4e-257 891.0 510 89.2
QL07p019755 Quercus lobata HOM05D003907 ORTHO05D004819 5.8e-257 890.6 509 90.2
CARHR211830 Cardamine hirsuta HOM05D003907 ORTHO05D004819 1.3e-256 889.4 510 89.0
Lj2A75G35 Lonicera japonica HOM05D003907 ORTHO05D004819 1.3e-256 889.4 510 89.2
Thhalv10013023m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.7e-256 889.0 510 89.2
AT5G01460 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 2.9e-256 888.3 510 89.2
arahy.Tifrunner.gnm1.ann1.NAY5W3 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.9e-256 888.3 510 90.0
arahy.Tifrunner.gnm1.ann1.S2G015 Arachis hypogaea HOM05D003907 ORTHO05D004819 2.9e-256 888.3 510 90.0
Cc06_g01360 Coffea canephora HOM05D003907 ORTHO05D004819 3.7e-256 887.9 510 89.4
Lsat_1_v5_gn_9_34621 Lactuca sativa HOM05D003907 ORTHO05D004819 1.1e-255 886.3 510 88.4
Sed0026155 Sechium edule HOM05D003907 ORTHO05D004819 1.1e-255 886.3 510 88.6
Atru.chr8.2242 Acer truncatum HOM05D003907 ORTHO05D004819 1.4e-255 885.9 511 89.8
AL3G19930 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 1.9e-255 885.6 510 88.2
Psat3g128200 Pisum sativum HOM05D003907 ORTHO05D004819 2.4e-255 885.2 510 88.6
Sp6g40750 Schrenkiella parvula HOM05D003907 ORTHO05D004819 3.2e-255 884.8 510 88.8
AL6G10610 Arabidopsis lyrata HOM05D003907 ORTHO05D004819 4.1e-255 884.4 510 88.4
CAN.G5.12 Capsicum annuum HOM05D003907 ORTHO05D004819 7.1e-255 883.6 510 88.2
AT3G08930 Arabidopsis thaliana HOM05D003907 ORTHO05D004819 1.2e-254 882.9 510 87.8
HanXRQChr10g0299881 Helianthus annuus HOM05D003907 ORTHO05D004819 2.1e-254 882.1 510 88.6
PGSC0003DMG400023084 Solanum tuberosum HOM05D003907 ORTHO05D004819 3.5e-254 881.3 510 87.8
CSS0040367 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 4.6e-254 880.9 511 88.8
Migut.L02013 Erythranthe guttata HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 87.5
Oeu041306.1 Olea europaea HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 88.0
SGA_v2.0_scaffold110G31215 Striga asiatica HOM05D003907 ORTHO05D004819 4.6e-254 880.9 510 87.1
Sabra06G0077000 Salix brachista HOM05D003907 ORTHO05D004819 6.0e-254 880.6 556 86.2
Thhalv10020541m.g Eutrema salsugineum HOM05D003907 ORTHO05D004819 1.0e-253 879.8 510 87.8
Sed0027660 Sechium edule HOM05D003907 ORTHO05D004819 1.3e-253 879.4 510 87.1
Carub.0003s0804 Capsella rubella HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 87.6
MD12G1166000 Malus domestica HOM05D003907 ORTHO05D004819 3.0e-253 878.2 510 89.0
Sopen09g001280 Solanum pennellii HOM05D003907 ORTHO05D004819 3.9e-253 877.9 510 87.6
Solyc09g005310.3 Solanum lycopersicum HOM05D003907 ORTHO05D004819 5.1e-253 877.5 510 87.6
Medtr7g068440 Medicago truncatula HOM05D003907 ORTHO05D004819 8.6e-253 876.7 510 87.8
Sp3g07320 Schrenkiella parvula HOM05D003907 ORTHO05D004819 1.9e-252 875.5 510 87.5
Nitab4.5_0000511g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 2.5e-252 875.2 510 88.4
CARHR083260 Cardamine hirsuta HOM05D003907 ORTHO05D004819 3.3e-252 874.8 510 87.5
Haze_21003 Corylus avellana HOM05D003907 ORTHO05D004819 3.3e-252 874.8 527 86.7
Glyma.03G058100 Glycine max HOM05D003907 ORTHO05D004819 4.3e-252 874.4 510 89.6
Nitab4.5_0000335g0010 Nicotiana tabacum HOM05D003907 ORTHO05D004819 5.6e-252 874.0 510 88.0
TPR.G13353 Trifolium pratense HOM05D003907 ORTHO05D004819 5.6e-252 874.0 511 88.3
CiPaw.10G156600 Carya illinoinensis HOM05D003907 ORTHO05D004819 1.2e-251 872.8 510 88.8
MD04G1152700 Malus domestica HOM05D003907 ORTHO05D004819 1.6e-251 872.5 510 88.4
Glyma.01G122100 Glycine max HOM05D003907 ORTHO05D004819 8.1e-251 870.2 510 89.0
CSS0038026 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 1.1e-250 869.8 510 86.9
Aqoxy2G00900 Aquilegia oxysepala HOM05D003907 ORTHO05D004819 6.8e-250 867.1 511 87.7
Migut.J00170 Erythranthe guttata HOM05D003907 ORTHO05D004819 6.8e-250 867.1 510 86.9
PGR004G0735 Punica granatum HOM05D003907 ORTHO05D004819 8.9e-250 866.7 510 87.8
BcaB04g18559 Brassica carinata HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 86.5
C05p58960 Brassica napus HOM05D003907 ORTHO05D004819 1.5e-249 865.9 510 86.7
BolC5t34549H Brassica oleracea HOM05D003907 ORTHO05D004819 2.0e-249 865.5 510 86.5
DCAR_018702 Daucus carota HOM05D003907 ORTHO05D004819 2.6e-249 865.1 511 86.3
BraSC256t45932Z Brassica rapa HOM05D003907 ORTHO05D004819 3.4e-249 864.8 510 86.5
Ca_20232_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.8e-249 864.0 510 86.9
RcHm_v2.0_Chr3g0463141 Rosa chinensis HOM05D003907 ORTHO05D004819 1.3e-248 862.8 510 86.9
Lj3g0019592 Lotus japonicus HOM05D003907 ORTHO05D004819 1.7e-248 862.4 510 87.3
FAN09G4250 Fragaria x ananassa HOM05D003907 ORTHO05D004819 1.4e-247 859.4 510 86.9
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 3.2e-247 858.2 494 87.9
vmacro11169 Vaccinium macrocarpon HOM05D003907 ORTHO05D004819 3.2e-247 858.2 549 81.8
Lalb_Chr01g0023081 Lupinus albus HOM05D003907 ORTHO05D004819 7.1e-247 857.1 512 87.5
unitig_8.g3229 Utricularia gibba HOM05D003907 ORTHO05D004819 7.1e-247 857.1 510 85.3
SalBow5G2920 Salvia bowleyana HOM05D003907 ORTHO05D004819 1.6e-246 855.9 510 84.9
Lalb_Chr03g0043281 Lupinus albus HOM05D003907 ORTHO05D004819 2.1e-246 855.5 512 87.1
Phvul.008G104400 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 3.5e-246 854.7 510 86.1
FAN02G2014 Fragaria x ananassa HOM05D003907 ORTHO05D004819 4.6e-246 854.4 510 86.5
FvH4_6g11450 Fragaria vesca HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 86.1
FAN14G1433 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 86.1
FAN14G5854 Fragaria x ananassa HOM05D003907 ORTHO05D004819 6.0e-246 854.0 510 86.1
PSO339G6136 Papaver somniferum HOM05D003907 ORTHO05D004819 6.0e-246 854.0 511 86.7
Aa31LG1G23090 Aethionema arabicum HOM05D003907 ORTHO05D004819 7.8e-246 853.6 494 88.7
PSO801G0155 Papaver somniferum HOM05D003907 ORTHO05D004819 7.8e-246 853.6 511 86.3
ATR0618G011 Amborella trichopoda HOM05D003907 ORTHO05D004819 1.1e-244 849.7 511 84.9
Eucgr.B02811 Eucalyptus grandis HOM05D003907 ORTHO05D004819 1.5e-244 849.4 494 89.3
Hund14296 Selenicereus undatus HOM05D003907 ORTHO05D004819 5.6e-244 847.4 511 85.3
Lj3A953T53 Lonicera japonica HOM05D003907 ORTHO05D004819 8.1e-243 843.6 524 83.6
Rhsim03G0144200 Rhododendron simsii HOM05D003907 ORTHO05D004819 2.4e-242 842.0 505 86.5
Ah.12g058610 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.2e-241 839.7 510 84.1
A03p36270 Brassica napus HOM05D003907 ORTHO05D004819 2.6e-241 838.6 510 84.3
C03p43910 Brassica napus HOM05D003907 ORTHO05D004819 2.6e-241 838.6 510 84.3
BolC3t16659H Brassica oleracea HOM05D003907 ORTHO05D004819 3.4e-241 838.2 510 84.1
COL.COLO4_14536 Corchorus olitorius HOM05D003907 ORTHO05D004819 3.4e-241 838.2 472 91.3
A05p39920 Brassica napus HOM05D003907 ORTHO05D004819 5.8e-241 837.4 494 86.4
BraA03t12798Z Brassica rapa HOM05D003907 ORTHO05D004819 7.6e-241 837.0 510 84.1
EL10Ac5g12561 Beta vulgaris HOM05D003907 ORTHO05D004819 8.4e-240 833.6 510 82.9
AUR62010458 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.1e-239 833.2 511 83.2
VMungo0331G1185 Vigna mungo HOM05D003907 ORTHO05D004819 2.1e-238 828.9 494 88.3
ECA247G1720 Erigeron canadensis HOM05D003907 ORTHO05D004819 2.7e-238 828.6 479 87.5
FAN05G4390 Fragaria x ananassa HOM05D003907 ORTHO05D004819 3.9e-237 824.7 494 85.8
Oeu064499.2 Olea europaea HOM05D003907 ORTHO05D004819 1.1e-231 806.6 547 77.5
Lalb_Chr19g0124541 Lupinus albus HOM05D003907 ORTHO05D004819 2.1e-230 802.4 512 83.2
CDE05G1648 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 2.7e-230 802.0 511 79.8
Zm00001eb269470 Zea mays HOM05D003907 ORTHO05D004819 7.9e-230 800.4 511 80.0
Ca_07641_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.1e-229 797.7 524 80.9
Ca_30080_v3 Cicer arietinum L. HOM05D003907 ORTHO05D004819 5.1e-229 797.7 524 80.9
CDE05G1838 Ceratophyllum demersum HOM05D003907 ORTHO05D004819 8.1e-227 790.4 511 78.9
AUR62030453 Chenopodium quinoa HOM05D003907 ORTHO05D004819 1.5e-225 786.2 512 79.7
Peaxi162Scf00141g01026 Petunia axillaris HOM05D003907 ORTHO05D004819 2.6e-225 785.4 510 80.6
Zm00001eb378570 Zea mays HOM05D003907 ORTHO05D004819 5.8e-225 784.3 511 79.3
Phvul.010G001200 Phaseolus vulgaris HOM05D003907 ORTHO05D004819 1.9e-223 779.2 510 81.0
BcaC05g29627 Brassica carinata HOM05D003907 ORTHO05D004819 2.4e-218 762.3 447 86.8
MELO3C003291.2 Cucumis melo HOM05D003907 ORTHO05D004819 3.7e-211 738.4 472 83.1
Duzib128G0387 Durio zibethinus HOM05D003907 ORTHO05D004819 1.4e-210 736.5 511 77.9
Lj3g0026649 Lotus japonicus HOM05D003907 ORTHO05D004819 2.1e-206 722.6 413 90.6
Duzib093G1828 Durio zibethinus HOM05D003907 ORTHO05D004819 1.3e-205 719.9 503 76.3
Actinidia20733 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.0e-200 703.7 510 74.1
Mapoly0058s0053 Marchantia polymorpha HOM05D003907 ORTHO05D004819 1.4e-194 683.3 516 66.5
SMO367G0485 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.5e-191 672.5 505 69.5
Cpa.g.sc11.141 Carica papaya HOM05D003907 ORTHO05D004819 1.5e-188 663.3 375 91.2
unitig_22.g6592 Utricularia gibba HOM05D003907 ORTHO05D004819 2.2e-184 649.4 468 72.9
Pp3c13_15020 Physcomitrium patens HOM05D003907 ORTHO05D004819 1.3e-179 633.6 516 62.2
HPP92_003698 Vanilla planifolia HOM05D003907 ORTHO05D004819 1.4e-173 613.6 379 83.6
Sc01g0006450 Simmondsia chinensis HOM05D003907 ORTHO05D004819 8.8e-173 610.9 365 86.3
TPR.G7076 Trifolium pratense HOM05D003907 ORTHO05D004819 3.4e-172 609.0 364 86.5
CBR_g40208 Chara braunii HOM05D003907 ORTHO05D004819 4.8e-171 605.1 514 62.1
CBR_g53729 Chara braunii HOM05D003907 ORTHO05D004819 1.5e-167 593.6 515 59.6
DCAR_015417 Daucus carota HOM05D003907 ORTHO05D004819 4.0e-165 585.5 504 64.5
SMO146G0061 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.8e-164 580.9 496 60.5
Hma1.2p1_0362F.1_g136250 Hydrangea macrophylla HOM05D003907 ORTHO05D004819 1.5e-159 567.0 325 91.4
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.2e-158 563.9 345 84.6
Pp3c23_4110 Physcomitrium patens HOM05D003907 ORTHO05D004819 3.0e-157 559.3 501 55.9
Actinidia11586 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.9e-151 540.0 457 67.6
Glyma.16G099300 Glycine max HOM05D003907 ORTHO05D004819 2.1e-150 536.6 307 92.5
Actinidia27153 Actinidia chinensis HOM05D003907 ORTHO05D004819 8.9e-141 504.6 284 93.3
AagrBONN_evm.TU.Sc2ySwM_368.1024 Anthoceros agrestis HOM05D003907 ORTHO05D004819 9.9e-132 474.6 383 61.9
Actinidia29101 Actinidia chinensis HOM05D003907 ORTHO05D004819 1.2e-124 451.1 254 88.6
PRCOL_00002088 Prasinoderma coloniale HOM05D003907 ORTHO05D004819 6.2e-118 428.7 513 47.0
Actinidia29102 Actinidia chinensis HOM05D003907 ORTHO05D004819 3.5e-113 412.9 245 89.0
MCO03G500 Micromonas commoda HOM05D003907 ORTHO05D004819 6.4e-107 392.1 486 44.7
SMO015G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.2e-106 389.4 386 55.4
SEGI_00285 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 3.9e-104 382.9 267 75.3
Cre01.g023400 Chlamydomonas reinhardtii HOM05D003907 ORTHO05D004819 1.3e-94 351.3 511 38.4
CSS0040994 Camellia sinensis var. sinensis HOM05D003907 ORTHO05D004819 3.4e-84 316.6 199 85.4
SMO173G0027 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 3.9e-72 276.6 343 47.5
TPR.G8133 Trifolium pratense HOM05D003907 ORTHO05D038338 3.5e-68 263.5 503 38.6
SEGI_07345 Sequoiadendron giganteum HOM05D003907 ORTHO05D004819 1.2e-60 238.4 144 84.7
SMO173G0021 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.2e-58 229.9 289 47.1
SMO023G0001 Selaginella moellendorffii HOM05D003907 ORTHO05D376622 1.2e-55 221.9 366 41.3
ATR0759G042 Amborella trichopoda HOM05D003907 ORTHO05D038338 4.0e-48 196.8 117 78.6
SMO146G0194 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 4.9e-46 189.9 211 54.0
ATR0759G047 Amborella trichopoda HOM05D003907 ORTHO05D004819 7.8e-44 182.6 143 72.0
SMO173G0002 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 2.5e-42 177.6 197 52.8
Ca_20230_v3 Cicer arietinum L. HOM05D003907 ORTHO05D148210 6.6e-35 152.9 106 74.5
SMO146G0334 Selaginella moellendorffii HOM05D003907 ORTHO05D004819 9.8e-31 139.0 119 59.7
BcaC01g04205 Brassica carinata HOM05D003907 ORTHO05D004819 6.4e-30 136.3 82 87.8
VMungo1080G1595 Vigna mungo HOM05D003907 ORTHO05D004819 3.7e-22 110.5 156 48.1
SMO173G0093 Selaginella moellendorffii HOM05D003907 ORTHO05D378519 2.5e-10 71.2 63 57.1
arahy.Tifrunner.gnm1.ann1.7H636Z Arachis hypogaea HOM05D005380 ORTHO05D006601 1.1e-08 65.9 37 83.8
arahy.Tifrunner.gnm1.ann1.W1QHU6 Arachis hypogaea HOM05D003907 ORTHO05D018508 1.2e-07 62.4 96 47.9


User provided reference genes

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