Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 1.9e-284 981.9 499 100.0
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 6.7e-242 840.5 595 76.1
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 2.7e-211 738.8 502 75.9
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 2.2e-184 649.4 511 68.7
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.1e-182 642.9 478 69.2
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 6.6e-181 637.9 511 68.1
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 8.6e-181 637.5 512 68.4
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 7.6e-177 624.4 505 68.1
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 8.3e-176 620.9 509 66.2
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.9e-175 619.8 488 69.3
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 3.9e-173 612.1 514 66.7
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 3.3e-172 609.0 512 66.8
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 5.6e-172 608.2 517 64.4
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 3.6e-171 605.5 508 64.8
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 4.7e-171 605.1 514 66.3
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 8.9e-170 600.9 508 65.2
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 6.6e-165 584.7 507 63.9
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 4.3e-164 582.0 514 64.4
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 7.6e-161 571.2 512 60.9
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.9e-159 566.6 511 62.2
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 3.2e-159 565.8 513 62.4
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 9.3e-159 564.3 512 59.8
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 6.0e-158 561.6 506 62.1
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 7.9e-158 561.2 479 62.4
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.1e-156 557.4 485 61.2
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 2.8e-155 552.7 422 67.1
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 8.1e-155 551.2 509 61.1
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 7.6e-153 544.7 470 66.2
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 3.8e-152 542.3 495 62.8
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 9.3e-151 537.7 513 59.8
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.6e-150 537.0 462 65.6
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 1.9e-148 530.0 512 57.8
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 4.3e-148 528.9 462 65.2
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 2.1e-147 526.6 508 56.9
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 2.1e-147 526.6 529 59.0
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 1.1e-146 524.2 499 61.1
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.2e-145 520.8 473 63.4
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 3.4e-145 519.2 507 59.4
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 3.4e-145 519.2 473 63.2
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.4e-145 519.2 473 63.2
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.4e-145 519.2 473 63.2
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 7.1e-143 511.5 515 57.5
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 1.2e-142 510.8 473 62.6
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 2.1e-142 510.0 468 63.0
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 1.5e-140 503.8 431 63.3
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 6.2e-139 498.4 447 63.8
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 4.2e-135 485.7 503 56.5
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 6.1e-134 481.9 534 56.2
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 1.5e-132 477.2 498 56.4
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 8.2e-131 471.5 480 57.7
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 4.1e-130 469.2 477 56.6
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 1.2e-129 467.6 499 56.1
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 2.0e-129 466.8 383 66.1
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.0e-128 464.5 381 66.4
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 1.7e-128 463.8 496 56.2
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 9.4e-127 458.0 516 54.8
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 3.6e-126 456.1 543 52.5
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 8.2e-123 444.9 503 52.7
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 1.2e-121 441.0 483 54.5
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 2.0e-121 440.3 483 53.4
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 4.5e-121 439.1 512 54.1
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 5.0e-120 435.6 498 52.6
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 6.5e-120 435.3 504 52.2
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.4e-119 434.1 383 63.2
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 1.4e-117 427.6 507 53.5
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.8e-117 427.2 477 53.0
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 8.8e-117 424.9 476 55.0
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 2.2e-115 420.2 502 50.2
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 6.3e-115 418.7 422 58.5
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 6.3e-115 418.7 500 50.8
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 6.3e-115 418.7 477 51.4
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 6.3e-115 418.7 474 51.7
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 1.4e-114 417.5 389 62.2
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 1.4e-114 417.5 475 53.3
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 3.1e-114 416.4 511 51.3
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 1.5e-113 414.1 477 52.0
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 2.0e-113 413.7 413 57.6
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.9e-113 412.1 407 58.0
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 1.0e-112 411.4 506 52.0
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.5e-111 406.8 387 58.1
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 1.2e-110 404.4 391 58.3
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 1.8e-109 400.6 485 53.0
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 8.8e-109 398.3 492 49.2
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 4.8e-107 392.5 500 49.8
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.7e-104 384.0 380 58.2
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 1.5e-103 380.9 398 55.8
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.3e-99 367.9 497 49.9
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 1.1e-98 364.8 478 47.3
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.1e-98 364.8 397 55.4
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 8.0e-94 348.6 361 54.8
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 5.7e-92 342.4 477 46.1
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 7.5e-92 342.0 517 44.1
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 4.9e-91 339.3 389 50.4
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 2.7e-89 333.6 356 55.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 1.3e-88 331.3 364 55.2
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 8.6e-88 328.6 368 53.3
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 1.5e-87 327.8 363 53.4
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 1.9e-87 327.4 370 53.8
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 2.5e-87 327.0 370 53.2
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 7.2e-87 325.5 366 52.5
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 3.6e-86 323.2 464 45.7
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 8.0e-86 322.0 381 52.2
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 5.2e-85 319.3 474 45.1
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 8.9e-85 318.5 325 57.5
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 1.3e-83 314.7 483 42.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 6.4e-83 312.4 366 52.2
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.6e-81 307.8 389 50.4
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 2.3e-80 303.9 546 38.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 5.0e-80 302.8 478 45.8
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 9.5e-79 298.5 406 46.6
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.2e-78 298.1 440 43.2
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 8.0e-78 295.4 449 44.1
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 1.2e-76 291.6 375 49.9
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 5.8e-76 289.3 366 49.5
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 2.9e-75 287.0 478 43.7
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 3.7e-75 286.6 460 45.7
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.5e-71 274.6 508 39.8
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 4.3e-71 273.1 392 45.7
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 9.5e-71 271.9 477 42.1
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 1.2e-65 255.0 420 42.6
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.9e-63 247.7 237 57.8
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 2.0e-60 237.7 418 40.2
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 7.8e-49 199.1 225 47.1
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 6.6e-48 196.1 181 55.2
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.3e-46 191.8 382 36.4
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 1.9e-39 167.9 111 80.2
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 3.2e-34 150.6 227 45.4
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 5.5e-34 149.8 188 41.5
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 1.8e-32 144.8 211 39.8
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 3.0e-32 144.1 158 53.2
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 2.5e-31 141.0 407 33.9
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 4.3e-31 140.2 246 42.7
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 2.8e-30 137.5 466 31.5
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 1.5e-28 131.7 238 33.6
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.6e-28 129.4 474 29.7
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 3.9e-24 117.1 106 46.2
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 5.7e-23 113.2 128 49.2
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 9.7e-15 85.9 50 82.0
Sopen01g013720 Solanum pennellii HOM05D005357 ORTHO05D006354 1.5e-12 78.6 114 42.1
Oeu020881.1 Olea europaea HOM05D005357 ORTHO05D006354 1.8e-08 65.1 81 53.1


User provided reference genes

Program Settings