Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G094600 Populus trichocarpa HOM05D003987 ORTHO05D004532 5.1e-277 957.2 521 100.0
Sabra06G0072400 Salix brachista HOM05D003987 ORTHO05D004532 9.4e-247 856.7 521 90.2
Potri.016G109100 Populus trichocarpa HOM05D003987 ORTHO05D004532 9.8e-220 766.9 522 83.3
Thecc.05G024900 Theobroma cacao HOM05D003987 ORTHO05D004532 2.0e-151 540.0 526 62.2
Duzib128G2001 Durio zibethinus HOM05D003987 ORTHO05D004532 1.8e-141 506.9 523 60.6
Atru.chr8.2120 Acer truncatum HOM05D003987 ORTHO05D004532 4.5e-140 502.3 519 60.7
Duzib093G0208 Durio zibethinus HOM05D003987 ORTHO05D004532 2.9e-139 499.6 508 62.0
Gohir.D04G127200 Gossypium hirsutum HOM05D003987 ORTHO05D004532 2.2e-134 483.4 527 58.4
Gorai.012G110200 Gossypium raimondii HOM05D003987 ORTHO05D004532 2.2e-134 483.4 527 58.6
Ciclev10011513m.g Citrus clementina HOM05D003987 ORTHO05D004532 4.5e-132 475.7 516 58.1
Gohir.A04G086900 Gossypium hirsutum HOM05D003987 ORTHO05D004532 1.0e-131 474.6 526 58.2
TWI77G0200 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 8.5e-131 471.5 518 57.3
COL.COLO4_14650 Corchorus olitorius HOM05D003987 ORTHO05D004532 2.3e-128 463.4 524 57.3
Manes.09G100200 Manihot esculenta HOM05D003987 ORTHO05D004532 2.3e-128 463.4 462 63.2
Gohir.A01G224300 Gossypium hirsutum HOM05D003987 ORTHO05D004532 5.9e-124 448.7 522 55.0
Gorai.002G259700 Gossypium raimondii HOM05D003987 ORTHO05D004532 5.9e-124 448.7 522 54.6
Haze_20924 Corylus avellana HOM05D003987 ORTHO05D004532 8.6e-123 444.9 515 55.9
ClCG10G021770 Citrullus lanatus HOM05D003987 ORTHO05D004532 8.9e-120 434.9 516 51.7
Dinv37095 Davidia involucrata HOM05D003987 ORTHO05D004532 4.9e-118 429.1 529 55.8
QL07p027561 Quercus lobata HOM05D003987 ORTHO05D004532 1.1e-117 427.9 487 56.7
Cfa017278 Carpinus fangiana HOM05D003987 ORTHO05D004532 9.2e-117 424.9 515 54.8
Cpa.g.sc56.87 Carica papaya HOM05D003987 ORTHO05D004532 3.9e-115 419.5 510 52.0
CsaV3_3G034330 Cucumis sativus L. HOM05D003987 ORTHO05D004532 7.3e-114 415.2 510 50.6
CSS0027188 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.6e-113 414.1 520 53.3
Lj2A83T77 Lonicera japonica HOM05D003987 ORTHO05D004532 8.0e-113 411.8 525 49.3
GSVIVG01034033001 Vitis vinifera HOM05D003987 ORTHO05D004532 2.3e-112 410.2 507 53.8
Nn2g13566 Nelumbo nucifera HOM05D003987 ORTHO05D004532 2.0e-111 407.1 522 52.9
MELO3C009204.2 Cucumis melo HOM05D003987 ORTHO05D004532 1.1e-109 401.4 508 49.6
Prupe.6G268000 Prunus persica HOM05D003987 ORTHO05D004532 4.1e-109 399.4 516 53.7
Duzib093G1974 Durio zibethinus HOM05D003987 ORTHO05D004532 1.1e-104 384.8 396 57.6
Dinv35526 Davidia involucrata HOM05D003987 ORTHO05D004532 3.7e-102 376.3 526 51.3
TAR633G1447 Trochodendron aralioides HOM05D003987 ORTHO05D004532 8.3e-102 375.2 520 51.3
CSS0029662 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 1.2e-97 361.3 519 48.2
FAN02G3471 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.2e-97 361.3 542 46.1
FvH4_6g12360 Fragaria vesca HOM05D003987 ORTHO05D004532 8.1e-97 358.6 543 47.7
MD04G1143500 Malus domestica HOM05D003987 ORTHO05D004532 1.1e-96 358.2 517 51.3
RcHm_v2.0_Chr3g0464181 Rosa chinensis HOM05D003987 ORTHO05D004532 8.9e-96 355.1 546 47.4
CSS0016809 Camellia sinensis var. sinensis HOM05D003987 ORTHO05D004532 2.6e-95 353.6 436 54.6
Peaxi162Scf01302g00045 Petunia axillaris HOM05D003987 ORTHO05D004532 3.4e-95 353.2 520 48.7
Actinidia05340 Actinidia chinensis HOM05D003987 ORTHO05D004532 4.9e-94 349.4 535 46.2
CANSAT78G1629 Cannabis sativa HOM05D003987 ORTHO05D004532 4.9e-94 349.4 528 46.6
PGSC0003DMG400020336 Solanum tuberosum HOM05D003987 ORTHO05D004532 6.0e-92 342.4 523 48.9
Nitab4.5_0017865g0010 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.1e-89 334.0 513 44.1
Oeu018344.1 Olea europaea HOM05D003987 ORTHO05D004532 3.6e-89 333.2 524 48.5
Nitab4.5_0000119g0280 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.7e-89 332.8 512 44.1
MBI14_g28607_MAGBIO Magnolia biondii HOM05D003987 ORTHO05D004532 6.2e-89 332.4 502 46.4
Glyma.18G193700 Glycine max HOM05D003987 ORTHO05D004532 1.1e-88 331.6 518 45.9
MD12G1157700 Malus domestica HOM05D003987 ORTHO05D004532 4.0e-88 329.7 520 49.4
Phvul.008G111900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 4.0e-88 329.7 521 46.1
Gohir.D01G213600 Gossypium hirsutum HOM05D003987 ORTHO05D004532 6.8e-88 328.9 416 48.3
DCAR_028789 Daucus carota HOM05D003987 ORTHO05D004532 8.9e-88 328.6 511 46.4
PGSC0003DMG400019132 Solanum tuberosum HOM05D003987 ORTHO05D004532 1.2e-87 328.2 520 44.4
vmacro08611 Vaccinium macrocarpon HOM05D003987 ORTHO05D004532 2.0e-87 327.4 504 46.2
Sopen09g006640 Solanum pennellii HOM05D003987 ORTHO05D004532 5.8e-87 325.9 521 47.2
Glyma.07G142800 Glycine max HOM05D003987 ORTHO05D004532 1.7e-86 324.3 510 44.9
Hund08928 Selenicereus undatus HOM05D003987 ORTHO05D004532 2.9e-86 323.6 534 44.8
Lj1g0003107 Lotus japonicus HOM05D003987 ORTHO05D004532 4.9e-86 322.8 519 45.3
Sed0025444 Sechium edule HOM05D003987 ORTHO05D004532 1.1e-85 321.6 453 49.4
Sp4g20270 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.4e-85 321.2 508 44.3
PGR031G1271 Punica granatum HOM05D003987 ORTHO05D004532 2.4e-85 320.5 518 44.8
AL4G34930 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.1e-84 317.4 513 45.6
FAN09G0914 Fragaria x ananassa HOM05D003987 ORTHO05D004532 2.1e-84 317.4 543 43.8
Hma1.2p1_0244F.1_g101070 Hydrangea macrophylla HOM05D003987 ORTHO05D004532 7.8e-84 315.5 537 45.6
Thhalv10016588m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.3e-83 314.7 509 46.6
Sed0006107 Sechium edule HOM05D003987 ORTHO05D004532 1.3e-83 314.7 437 46.0
Carub.0004s1992 Capsella rubella HOM05D003987 ORTHO05D004532 1.7e-83 314.3 521 44.5
Peaxi162Scf00014g00921 Petunia axillaris HOM05D003987 ORTHO05D004532 3.3e-82 310.1 506 44.1
SalBow3G0011 Salvia bowleyana HOM05D003987 ORTHO05D004532 2.1e-81 307.4 517 42.6
AT2G37960 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 6.2e-81 305.8 513 44.8
PSO384G1037 Papaver somniferum HOM05D003987 ORTHO05D004532 6.2e-81 305.8 536 43.5
Lj3g0003026 Lotus japonicus HOM05D003987 ORTHO05D004532 1.8e-80 304.3 511 44.0
arahy.Tifrunner.gnm1.ann1.S0ZXK0 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.4e-80 303.9 521 44.3
PSO339G5295 Papaver somniferum HOM05D003987 ORTHO05D004532 2.4e-80 303.9 538 43.3
arahy.Tifrunner.gnm1.ann1.B3S732 Arachis hypogaea HOM05D003987 ORTHO05D004532 4.0e-80 303.1 523 44.0
DCAR_012161 Daucus carota HOM05D003987 ORTHO05D004532 1.5e-79 301.2 519 42.8
Lalb_Chr01g0022851 Lupinus albus HOM05D003987 ORTHO05D004532 1.3e-78 298.1 514 46.7
Cc06_g01840 Coffea canephora HOM05D003987 ORTHO05D004532 4.9e-78 296.2 511 42.1
VMungo1383G2510 Vigna mungo HOM05D003987 ORTHO05D004532 4.9e-78 296.2 507 45.2
Migut.J00243 Erythranthe guttata HOM05D003987 ORTHO05D004532 1.9e-77 294.3 513 41.1
Oeu009906.1 Olea europaea HOM05D003987 ORTHO05D004532 2.7e-76 290.4 537 44.5
Sc22g0004580 Simmondsia chinensis HOM05D003987 ORTHO05D004532 5.1e-75 286.2 479 44.7
EL10Ac8g18936 Beta vulgaris HOM05D003987 ORTHO05D004532 1.9e-74 284.3 533 40.2
AL5G35070 Arabidopsis lyrata HOM05D003987 ORTHO05D004532 2.8e-73 280.4 513 43.3
AUR62025345 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.0e-72 276.6 521 38.8
Nitab4.5_0000008g0400 Nicotiana tabacum HOM05D003987 ORTHO05D004532 4.5e-71 273.1 540 42.6
Psat7g242560 Pisum sativum HOM05D003987 ORTHO05D004532 1.3e-70 271.6 523 42.3
HanXRQChr01g0001271 Helianthus annuus HOM05D003987 ORTHO05D004532 2.2e-70 270.8 514 44.0
Lsat_1_v5_gn_9_33201 Lactuca sativa HOM05D003987 ORTHO05D004532 6.4e-70 269.2 505 39.6
Aqoxy1G00765 Aquilegia oxysepala HOM05D003987 ORTHO05D004532 1.1e-69 268.5 529 39.9
Sopen10g036150 Solanum pennellii HOM05D003987 ORTHO05D004532 1.6e-68 264.6 514 37.5
A04p29100 Brassica napus HOM05D003987 ORTHO05D004532 4.6e-68 263.1 526 42.4
AUR62028348 Chenopodium quinoa HOM05D003987 ORTHO05D004532 4.6e-68 263.1 505 38.2
Medtr4g019040 Medicago truncatula HOM05D003987 ORTHO05D004532 6.0e-68 262.7 525 41.7
TAR623G1001 Trochodendron aralioides HOM05D003987 ORTHO05D004532 6.0e-68 262.7 458 44.1
Lalb_Chr19g0124881 Lupinus albus HOM05D003987 ORTHO05D004532 3.0e-67 260.4 448 45.8
BolC4t28137H Brassica oleracea HOM05D003987 ORTHO05D004532 8.7e-67 258.8 521 40.3
Thhalv10010371m.g Eutrema salsugineum HOM05D003987 ORTHO05D004532 1.5e-66 258.1 493 40.8
BraA04t18380Z Brassica rapa HOM05D003987 ORTHO05D004532 5.6e-66 256.1 526 42.2
THA.LOC104805691 Tarenaya hassleriana HOM05D003987 ORTHO05D004532 3.7e-65 253.4 472 41.9
BraA05t19770Z Brassica rapa HOM05D003987 ORTHO05D004532 1.5e-63 248.1 439 40.3
Nitab4.5_0002152g0110 Nicotiana tabacum HOM05D003987 ORTHO05D004532 2.6e-63 247.3 506 41.7
Solyc09g011820.4 Solanum lycopersicum HOM05D003987 ORTHO05D004532 1.9e-61 241.1 454 43.2
A05p08030 Brassica napus HOM05D003987 ORTHO05D004532 2.5e-61 240.7 439 39.6
Aa31LG10G8760 Aethionema arabicum HOM05D003987 ORTHO05D004532 5.5e-61 239.6 477 38.6
BolC4t22577H Brassica oleracea HOM05D003987 ORTHO05D004532 9.3e-61 238.8 438 42.0
arahy.Tifrunner.gnm1.ann1.84Z36X Arachis hypogaea HOM05D003987 ORTHO05D004532 2.1e-60 237.7 522 42.9
Ca_20115_v3 Cicer arietinum L. HOM05D003987 ORTHO05D004532 6.0e-60 236.1 489 43.1
AT3G54060 Arabidopsis thaliana HOM05D003987 ORTHO05D004532 2.3e-59 234.2 484 41.5
Oeu044376.1 Olea europaea HOM05D003987 ORTHO05D004532 2.3e-59 234.2 424 41.3
BcaC02g11934 Brassica carinata HOM05D003987 ORTHO05D004532 5.1e-59 233.0 438 40.2
Sabra16G0105800 Salix brachista HOM05D003987 ORTHO05D004532 8.7e-59 232.3 139 84.2
C04p09710 Brassica napus HOM05D003987 ORTHO05D004532 1.9e-58 231.1 438 39.0
CARHR132510 Cardamine hirsuta HOM05D003987 ORTHO05D004532 4.3e-58 229.9 521 37.4
SGA_v2.0_scaffold75G24988 Striga asiatica HOM05D003987 ORTHO05D004532 1.6e-57 228.0 518 37.3
BcaB02g09232 Brassica carinata HOM05D003987 ORTHO05D004532 4.8e-57 226.5 432 39.4
FAN05G0535 Fragaria x ananassa HOM05D003987 ORTHO05D004532 1.0e-54 218.8 438 39.7
Migut.L01985 Erythranthe guttata HOM05D003987 ORTHO05D004532 2.9e-54 217.2 449 39.4
unitig_749.g14175 Utricularia gibba HOM05D003987 ORTHO05D004532 6.5e-54 216.1 543 34.6
arahy.Tifrunner.gnm1.ann1.L5BN96 Arachis hypogaea HOM05D003987 ORTHO05D004532 2.7e-52 210.7 509 41.5
arahy.Tifrunner.gnm1.ann1.C5KK4K Arachis hypogaea HOM05D003987 ORTHO05D004532 4.6e-52 209.9 456 42.5
CAN.G351.10 Capsicum annuum HOM05D003987 ORTHO05D004532 1.3e-51 208.4 256 49.2
C06p21870 Brassica napus HOM05D003987 ORTHO05D004532 1.1e-48 198.7 462 41.1
A07p21960 Brassica napus HOM05D003987 ORTHO05D004532 1.4e-48 198.4 462 38.1
BraA07t29878Z Brassica rapa HOM05D003987 ORTHO05D004532 4.1e-48 196.8 462 38.5
Carub.0005s2065 Capsella rubella HOM05D003987 ORTHO05D004532 1.5e-47 194.9 459 37.9
Sp5g18210 Schrenkiella parvula HOM05D003987 ORTHO05D004532 1.5e-47 194.9 478 36.4
BcaC08g44664 Brassica carinata HOM05D003987 ORTHO05D004532 2.2e-46 191.0 463 40.8
CDE02G0690 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 2.1e-44 184.5 517 31.9
Sp5g08320 Schrenkiella parvula HOM05D003987 ORTHO05D004532 4.6e-44 183.3 475 34.7
ECA248G1591 Erigeron canadensis HOM05D003987 ORTHO05D004532 1.8e-43 181.4 515 34.6
Solyc10g086740.3 Solanum lycopersicum HOM05D003987 ORTHO05D004532 5.1e-43 179.9 345 38.6
CDE09G1167 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 6.7e-43 179.5 512 32.8
TPR.G8182 Trifolium pratense HOM05D003987 ORTHO05D004532 8.8e-43 179.1 383 38.1
MSTRG.19041 Avicennia marina HOM05D003987 ORTHO05D004532 2.0e-42 177.9 360 36.4
Actinidia01122 Actinidia chinensis HOM05D003987 ORTHO05D004532 6.3e-41 172.9 423 36.6
Eucgr.A00531 Eucalyptus grandis HOM05D003987 ORTHO05D004532 1.2e-39 168.7 222 46.4
BcaB02g07750 Brassica carinata HOM05D003987 ORTHO05D004532 1.9e-37 161.4 424 37.3
TWI74G0508 Tripterygium wilfordii HOM05D003987 ORTHO05D004532 3.2e-37 160.6 453 34.7
FAN14G4402 Fragaria x ananassa HOM05D003987 ORTHO05D004532 7.9e-36 156.0 180 47.2
Dinv04008 Davidia involucrata HOM05D003987 ORTHO05D004532 3.0e-35 154.1 143 60.1
Glyma.01G108900 Glycine max HOM05D003987 ORTHO05D004532 2.8e-33 147.5 417 33.6
Glyma.U031101 Glycine max HOM05D003987 ORTHO05D004532 3.7e-33 147.1 417 33.6
Glyma.01G108800 Glycine max HOM05D003987 ORTHO05D004532 1.4e-32 145.2 417 33.6
MSTRG.19040 Avicennia marina HOM05D003987 ORTHO05D004532 1.5e-29 135.2 145 57.2
Glyma.03G074167 Glycine max HOM05D003987 ORTHO05D004532 1.4e-27 128.6 411 31.6
HPP92_003415 Vanilla planifolia HOM05D003987 ORTHO05D004532 3.0e-27 127.5 492 31.1
Solyc10g086750.1 Solanum lycopersicum HOM05D003987 ORTHO05D004532 4.4e-26 123.6 130 53.8
unitig_26.g9099 Utricularia gibba HOM05D003987 ORTHO05D004532 1.4e-24 118.6 307 35.2
ATR0618G159 Amborella trichopoda HOM05D003987 ORTHO05D004532 4.1e-24 117.1 507 30.4
TPR.G8224 Trifolium pratense HOM05D003987 ORTHO05D004532 1.3e-22 112.1 121 66.1
Glyma.01G153900 Glycine max HOM05D003987 ORTHO05D004532 7.2e-21 106.3 365 31.5
Psat6g189000 Pisum sativum HOM05D003987 ORTHO05D004532 2.1e-20 104.8 220 36.4
Zm00001eb298020 Zea mays HOM05D003987 ORTHO05D004532 2.3e-19 101.3 534 26.6
Rhsim07G0146000 Rhododendron simsii HOM05D003987 ORTHO05D004532 4.0e-19 100.5 296 32.8
SHI32880 Sapria himalayana HOM05D003987 ORTHO05D004532 6.8e-19 99.8 221 38.5
Medtr7g066170 Medicago truncatula HOM05D003987 ORTHO05D004532 3.7e-17 94.0 110 47.3
SEGI_16848 Sequoiadendron giganteum HOM05D003987 ORTHO05D004532 2.2e-14 84.7 467 27.2
CDE04G2728 Ceratophyllum demersum HOM05D003987 ORTHO05D004532 1.0e-11 75.9 111 39.6
SHI32881 Sapria himalayana HOM05D003987 ORTHO05D004532 4.0e-11 73.9 61 67.2
Phvul.006G111000 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 8.8e-11 72.8 232 29.3
Phvul.010G006100 Phaseolus vulgaris HOM05D014262 ORTHO05D004532 3.4e-10 70.9 106 39.6
BolC6t37375H Brassica oleracea HOM05D003987 ORTHO05D004532 7.5e-10 69.7 56 62.5
VMungo1309G3141 Vigna mungo HOM05D014262 ORTHO05D018084 4.9e-09 67.0 124 35.5
TPR.G13647 Trifolium pratense HOM05D003987 ORTHO05D004532 6.3e-09 66.6 216 27.3
Os03g0100010 Oryza sativa ssp. japonica HOM05D003987 ORTHO05D004532 1.8e-08 65.1 95 40.0
Phvul.010G006800 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.4e-08 63.5 383 27.4
unitig_26.g9098 Utricularia gibba HOM05D003987 ORTHO05D004532 5.4e-08 63.5 130 32.3
BcaC02g11935 Brassica carinata HOM05D003987 ORTHO05D004532 3.5e-07 60.8 46 60.9
Phvul.010G006900 Phaseolus vulgaris HOM05D003987 ORTHO05D004532 5.9e-07 60.1 431 27.1
TPR.G34870 Trifolium pratense HOM05D003987 ORTHO05D004532 1.0e-06 59.3 392 27.0
Phvul.005G150800 Phaseolus vulgaris HOM05D014262 ORTHO05D018084 2.3e-06 58.2 327 25.4
VMungo1309G2694 Vigna mungo HOM05D014262 ORTHO05D018084 5.0e-06 57.0 106 34.0


User provided reference genes

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