Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 1.8e-35 152.1 80 100.0
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 1.6e-28 129.0 79 87.3
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 5.1e-19 97.4 58 81.0
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 3.1e-16 88.2 72 58.3
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 1.6e-15 85.9 79 55.7
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 2.0e-15 85.5 79 49.4
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 2.0e-15 85.5 79 50.6
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.6e-15 85.1 79 49.4
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.6e-15 85.1 79 51.9
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 2.6e-15 85.1 79 51.9
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.5e-15 84.7 79 51.9
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 3.5e-15 84.7 70 61.4
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 5.9e-15 84.0 79 48.1
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 7.7e-15 83.6 80 53.8
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.0e-14 83.2 79 48.1
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 1.0e-14 83.2 79 54.4
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 1.3e-14 82.8 80 51.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.3e-14 82.8 81 53.1
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 2.2e-14 82.0 79 46.8
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 2.2e-14 82.0 78 50.0
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 2.9e-14 81.6 79 54.4
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 5.0e-14 80.9 78 50.0
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 8.5e-14 80.1 82 46.3
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.1e-13 79.7 61 63.9
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 1.5e-13 79.3 80 51.2
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 2.5e-13 78.6 80 48.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.2e-13 78.2 78 59.0
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 3.2e-13 78.2 72 54.2
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 3.2e-13 78.2 71 56.3
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 7.2e-13 77.0 82 50.0
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 7.2e-13 77.0 79 49.4
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 7.2e-13 77.0 41 73.2
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-12 76.3 57 61.4
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 1.2e-12 76.3 57 61.4
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-12 75.1 80 50.0
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 2.7e-12 75.1 80 50.0
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 3.6e-12 74.7 62 59.7
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.6e-12 74.7 54 63.0
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 3.6e-12 74.7 54 63.0
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 4.7e-12 74.3 61 60.7
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 4.7e-12 74.3 61 60.7
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 4.7e-12 74.3 75 50.7
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 8.0e-12 73.6 79 50.6
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 8.0e-12 73.6 62 53.2
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 1.0e-11 73.2 63 54.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 1.0e-11 73.2 63 58.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 1.4e-11 72.8 79 46.8
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 1.4e-11 72.8 61 49.2
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 1.8e-11 72.4 58 58.6
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.3e-11 72.0 79 50.6
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.0e-11 71.6 66 57.6
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 3.0e-11 71.6 79 40.5
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 4.0e-11 71.2 79 45.6
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.7e-11 70.5 45 60.0
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 6.7e-11 70.5 45 60.0
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.5e-10 69.3 60 55.0
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.3e-10 68.2 76 47.4
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 4.4e-10 67.8 52 57.7
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 4.4e-10 67.8 77 40.3
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.7e-10 67.4 76 48.7
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 5.7e-10 67.4 79 43.0
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 5.7e-10 67.4 56 58.9
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 9.7e-10 66.6 41 70.7
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.3e-09 66.2 51 58.8
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.7e-09 65.9 82 43.9
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 1.7e-09 65.9 64 51.6
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.2e-09 65.5 50 56.0
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 2.2e-09 65.5 81 44.4
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.8e-09 65.1 82 42.7
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.8e-09 65.1 51 51.0
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 3.7e-09 64.7 83 42.2
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 3.7e-09 64.7 38 63.2
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 4.8e-09 64.3 38 63.2
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 6.3e-09 63.9 37 62.2
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.1e-08 63.2 51 49.0
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 1.1e-08 63.2 39 64.1
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 1.4e-08 62.8 54 50.0
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.8e-08 62.4 81 44.4
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 1.8e-08 62.4 40 52.5
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 2.4e-08 62.0 52 53.8
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 2.4e-08 62.0 60 40.0
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.4e-08 62.0 51 49.0
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 3.1e-08 61.6 41 61.0
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 3.1e-08 61.6 57 52.6
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 4.1e-08 61.2 52 51.9
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 5.3e-08 60.8 55 54.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 5.3e-08 60.8 52 51.9
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 5.3e-08 60.8 52 50.0
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 7.0e-08 60.5 52 50.0
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 7.0e-08 60.5 35 62.9
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 7.0e-08 60.5 38 60.5
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 9.1e-08 60.1 50 50.0
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 1.6e-07 59.3 53 50.9
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 1.6e-07 59.3 43 53.5
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.0e-07 58.9 57 45.6
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 2.0e-07 58.9 42 59.5
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 2.7e-07 58.5 57 43.9
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 4.5e-07 57.8 49 53.1
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 4.5e-07 57.8 39 59.0
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 5.9e-07 57.4 38 55.3
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 5.9e-07 57.4 59 49.2
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 1.3e-06 56.2 38 55.3
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 2.9e-06 55.1 52 50.0
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 3.8e-06 54.7 39 56.4
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 3.8e-06 54.7 64 46.9
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.0e-06 54.3 36 61.1
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 5.0e-06 54.3 36 61.1
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 5.0e-06 54.3 36 61.1
SalBow6G4181 Salvia bowleyana HOM05D061281 ORTHO05D008592 5.0e-06 54.3 53 43.4
SalBow6G4537 Salvia bowleyana HOM05D061281 ORTHO05D008592 5.0e-06 54.3 53 43.4
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 8.5e-06 53.5 54 50.0


User provided reference genes

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