Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G090100 Populus trichocarpa HOM05D007574 ORTHO05D007552 1.3e-48 196.1 101 100.0
Sabra06G0068200 Salix brachista HOM05D007574 ORTHO05D007552 2.9e-43 178.3 99 92.9
Potri.016G101900 Populus trichocarpa HOM05D007574 ORTHO05D007552 3.3e-39 164.9 101 84.2
Manes.08G080600 Manihot esculenta HOM05D007574 ORTHO05D007552 2.1e-33 145.6 98 79.6
Manes.09G095800 Manihot esculenta HOM05D007574 ORTHO05D007552 1.0e-32 143.3 97 78.4
QL07p028963 Quercus lobata HOM05D007574 ORTHO05D007552 2.4e-29 132.1 98 70.4
QL07p029642 Quercus lobata HOM05D007574 ORTHO05D007552 2.4e-29 132.1 98 70.4
Gohir.D04G123600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.7e-27 125.9 103 72.8
Thecc.05G033200 Theobroma cacao HOM05D007574 ORTHO05D007552 2.2e-27 125.6 97 72.2
CiPaw.09G197900 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.1e-26 123.2 99 72.7
Eucgr.B02706 Eucalyptus grandis HOM05D007574 ORTHO05D007552 1.9e-26 122.5 101 64.4
Gorai.012G106400 Gossypium raimondii HOM05D007574 ORTHO05D007552 5.5e-26 120.9 103 69.9
Lj3g0003670 Lotus japonicus HOM05D007574 ORTHO05D007552 1.6e-25 119.4 100 67.0
Dinv37135 Davidia involucrata HOM05D007574 ORTHO05D007552 2.1e-25 119.0 86 73.3
Duzib128G0069 Durio zibethinus HOM05D007574 ORTHO05D007552 3.6e-25 118.2 99 70.7
Duzib106G1300 Durio zibethinus HOM05D007574 ORTHO05D007552 4.6e-25 117.9 91 71.4
Ciclev10013212m.g Citrus clementina HOM05D007574 ORTHO05D007552 7.9e-25 117.1 98 67.3
Gohir.A04G084700 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.8e-24 115.9 105 67.6
Glyma.01G102300 Glycine max HOM05D007574 ORTHO05D007552 2.3e-24 115.5 98 66.3
CSS0039527 Camellia sinensis var. sinensis HOM05D007574 ORTHO05D007552 5.1e-24 114.4 93 66.7
CiPaw.10G148000 Carya illinoinensis HOM05D007574 ORTHO05D007552 1.1e-23 113.2 106 68.9
Aqoxy2G02344 Aquilegia oxysepala HOM05D007574 ORTHO05D007552 1.5e-23 112.8 98 60.2
Phvul.010G016401 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 1.5e-23 112.8 98 63.3
Glyma.03G067200 Glycine max HOM05D007574 ORTHO05D007552 2.5e-23 112.1 98 64.3
TWI77G0884 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 3.3e-23 111.7 99 63.6
TAR633G0850 Trochodendron aralioides HOM05D007574 ORTHO05D007552 3.3e-23 111.7 101 60.4
MBI05_g35175_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 4.3e-23 111.3 95 64.2
GSVIVG01034109001 Vitis vinifera HOM05D007574 ORTHO05D007552 4.3e-23 111.3 100 63.0
Atru.chr8.2045 Acer truncatum HOM05D007574 ORTHO05D007552 1.7e-22 109.4 99 62.6
Prupe.6G261000 Prunus persica HOM05D007574 ORTHO05D007552 4.8e-22 107.8 95 62.1
TAR623G1460 Trochodendron aralioides HOM05D007574 ORTHO05D007552 8.2e-22 107.1 99 61.6
Hma1.2p1_0766F.1_g215190 Hydrangea macrophylla HOM05D007574 ORTHO05D007552 1.4e-21 106.3 70 75.7
TWI53G1464 Tripterygium wilfordii HOM05D007574 ORTHO05D007552 1.8e-21 105.9 98 62.2
PGR031G1556 Punica granatum HOM05D007574 ORTHO05D007552 2.4e-21 105.5 103 63.1
Atru.chr8.2052 Acer truncatum HOM05D007574 ORTHO05D007552 4.1e-21 104.8 99 60.6
Phvul.008G115600 Phaseolus vulgaris HOM05D007574 ORTHO05D007552 6.9e-21 104.0 97 62.9
Nn2g13483 Nelumbo nucifera HOM05D007574 ORTHO05D007552 1.5e-20 102.8 96 58.3
Glyma.18G187300 Glycine max HOM05D007574 ORTHO05D007552 1.0e-19 100.1 99 62.6
MD04G1135900 Malus domestica HOM05D007574 ORTHO05D007552 1.3e-19 99.8 96 54.2
RcHm_v2.0_Chr3g0465351 Rosa chinensis HOM05D007574 ORTHO05D007552 3.8e-19 98.2 95 56.8
FAN09G4076 Fragaria x ananassa HOM05D007574 ORTHO05D007552 6.5e-19 97.4 95 54.7
Eucgr.K03060 Eucalyptus grandis HOM05D007574 ORTHO05D007552 2.5e-18 95.5 100 58.0
PGSC0003DMG400019195 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.5e-18 95.5 97 57.7
FAN05G1951 Fragaria x ananassa HOM05D007574 ORTHO05D007552 5.5e-18 94.4 95 54.7
ClCG10G021430 Citrullus lanatus HOM05D007574 ORTHO05D007552 1.6e-17 92.8 98 59.2
Nn2g11240 Nelumbo nucifera HOM05D007574 ORTHO05D007552 2.1e-17 92.4 96 54.2
Peaxi162Scf00330g00113 Petunia axillaris HOM05D007574 ORTHO05D007552 2.1e-17 92.4 100 59.0
Glyma.07G136800 Glycine max HOM05D007574 ORTHO05D007552 6.1e-17 90.9 98 59.2
Gohir.D01G210600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 6.1e-17 90.9 104 59.6
Gorai.002G256300 Gossypium raimondii HOM05D007574 ORTHO05D007552 6.1e-17 90.9 104 59.6
Medtr7g063490 Medicago truncatula HOM05D007574 ORTHO05D007552 6.1e-17 90.9 98 57.1
MELO3C009230.2 Cucumis melo HOM05D007574 ORTHO05D007552 7.9e-17 90.5 98 58.2
CsaV3_3G034590 Cucumis sativus L. HOM05D007574 ORTHO05D007552 2.3e-16 89.0 96 58.3
Lj1g0014408 Lotus japonicus HOM05D007574 ORTHO05D007552 3.9e-16 88.2 98 57.1
Nitab4.5_0004744g0030 Nicotiana tabacum HOM05D007574 ORTHO05D007552 3.9e-16 88.2 79 58.2
TPR.G5586 Trifolium pratense HOM05D007574 ORTHO05D007552 5.1e-16 87.8 104 52.9
Gohir.A01G221600 Gossypium hirsutum HOM05D007574 ORTHO05D007552 1.1e-15 86.7 103 59.2
Medtr4g021330 Medicago truncatula HOM05D007574 ORTHO05D007552 1.1e-15 86.7 101 53.5
Lalb_Chr19g0125161 Lupinus albus HOM05D007574 ORTHO05D007552 2.6e-15 85.5 94 54.3
Lalb_Chr01g0022701 Lupinus albus HOM05D007574 ORTHO05D007552 3.3e-15 85.1 98 55.1
TPR.G27329 Trifolium pratense HOM05D007574 ORTHO05D007552 5.7e-15 84.3 98 55.1
Rhsim05G0198100 Rhododendron simsii HOM05D007574 ORTHO05D007552 1.3e-14 83.2 96 50.0
Cpa.g.c39617 Carica papaya HOM05D007574 ORTHO05D007552 3.7e-14 81.6 96 51.0
Lalb_Chr03g0042511 Lupinus albus HOM05D007574 ORTHO05D007552 4.8e-14 81.3 89 56.2
ATR0665G027 Amborella trichopoda HOM05D007574 ORTHO05D007552 8.2e-14 80.5 98 50.0
Sed0004598 Sechium edule HOM05D007574 ORTHO05D007552 1.1e-13 80.1 98 52.0
Lj1g0012526 Lotus japonicus HOM05D007574 ORTHO05D007552 1.4e-13 79.7 98 52.0
Nitab4.5_0004598g0040 Nicotiana tabacum HOM05D007574 ORTHO05D007552 1.4e-13 79.7 84 57.1
MD12G1149400 Malus domestica HOM05D007574 ORTHO05D007552 1.8e-13 79.3 97 49.5
Rhsim05G0196100 Rhododendron simsii HOM05D007574 ORTHO05D007552 2.4e-13 79.0 96 47.9
DCAR_012128 Daucus carota HOM05D007574 ORTHO05D007552 7.0e-13 77.4 47 76.6
Oeu001849.1 Olea europaea HOM05D007574 ORTHO05D007552 2.6e-12 75.5 94 53.2
Sc01g0004620 Simmondsia chinensis HOM05D007574 ORTHO05D007552 2.6e-12 75.5 87 51.7
Sopen10g036030 Solanum pennellii HOM05D007574 ORTHO05D007552 1.7e-11 72.8 94 47.9
AUR62027719 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.2e-11 72.4 98 49.0
PGSC0003DMG400008893 Solanum tuberosum HOM05D007574 ORTHO05D007552 2.2e-11 72.4 103 45.6
Solyc09g011190.1 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.8e-11 71.6 103 45.6
Solyc10g086630.2 Solanum lycopersicum HOM05D007574 ORTHO05D007552 3.8e-11 71.6 97 47.4
Sopen09g005930 Solanum pennellii HOM05D007574 ORTHO05D007552 8.5e-11 70.5 103 45.6
Migut.L01966 Erythranthe guttata HOM05D007574 ORTHO05D007552 3.2e-10 68.6 88 48.9
C04p10180 Brassica napus HOM05D009505 ORTHO05D007552 4.2e-10 68.2 88 47.7
Manes.02G127800 Manihot esculenta HOM05D007574 ORTHO05D007552 9.4e-10 67.0 94 44.7
BolC4t28121H Brassica oleracea HOM05D009505 ORTHO05D007552 1.2e-09 66.6 93 44.1
BraA05t19787Z Brassica rapa HOM05D009505 ORTHO05D007552 1.2e-09 66.6 88 44.3
AUR62043962 Chenopodium quinoa HOM05D007574 ORTHO05D007552 2.1e-09 65.9 97 46.4
BcaC02g07493 Brassica carinata HOM05D009505 ORTHO05D007552 2.7e-09 65.5 93 43.0
C04p66190 Brassica napus HOM05D009505 ORTHO05D007552 2.7e-09 65.5 93 43.0
HPP92_019232 Vanilla planifolia HOM05D007574 ORTHO05D007552 2.7e-09 65.5 59 54.2
Aa31sc218G10 Aethionema arabicum HOM05D009505 ORTHO05D007552 3.6e-09 65.1 98 43.9
PSO675G0145 Papaver somniferum HOM05D007574 ORTHO05D007552 3.6e-09 65.1 109 43.1
Carub.0004s1969 Capsella rubella HOM05D009505 ORTHO05D007552 6.1e-09 64.3 98 42.9
BcaB02g09253 Brassica carinata HOM05D009505 ORTHO05D007552 1.0e-08 63.5 88 44.3
BcaB02g09254 Brassica carinata HOM05D009505 ORTHO05D007552 1.0e-08 63.5 88 44.3
Sp4g20120 Schrenkiella parvula HOM05D009505 ORTHO05D007552 1.0e-08 63.5 93 40.9
SalBow5G2190 Salvia bowleyana HOM05D007574 ORTHO05D007552 1.4e-08 63.2 55 56.4
Thecc.09G313900 Theobroma cacao HOM05D007574 ORTHO05D007552 1.8e-08 62.8 67 50.7
Thhalv10017906m.g Eutrema salsugineum HOM05D009505 ORTHO05D007552 2.3e-08 62.4 88 44.3
THA.LOC109116793 Tarenaya hassleriana HOM05D009057 ORTHO05D011698 3.0e-08 62.0 83 51.8
AT2G37750 Arabidopsis thaliana HOM05D009505 ORTHO05D007552 4.0e-08 61.6 98 40.8
MBI14_g13884_MAGBIO Magnolia biondii HOM05D007574 ORTHO05D007552 4.0e-08 61.6 71 60.6
BcaB06g29026 Brassica carinata HOM05D009505 ORTHO05D007552 5.2e-08 61.2 91 42.9
BcaC01g05595 Brassica carinata HOM05D009505 ORTHO05D007552 5.2e-08 61.2 93 45.2
BcaC01g05596 Brassica carinata HOM05D009505 ORTHO05D007552 5.2e-08 61.2 93 45.2
C03p24490 Brassica napus HOM05D009505 ORTHO05D007552 5.2e-08 61.2 93 45.2
BolC3t14847H Brassica oleracea HOM05D009505 ORTHO05D007552 5.2e-08 61.2 93 45.2
COL.COLO4_18585 Corchorus olitorius HOM05D007574 ORTHO05D007552 6.7e-08 60.8 88 42.0
BcaB01g03759 Brassica carinata HOM05D009505 ORTHO05D007552 8.8e-08 60.5 93 43.0
Lsat_1_v5_gn_6_117001 Lactuca sativa HOM05D007574 ORTHO05D007552 1.1e-07 60.1 76 55.3
THA.LOC104824525 Tarenaya hassleriana HOM05D009505 ORTHO05D007552 2.6e-07 58.9 103 45.6
BolC9t60174H Brassica oleracea HOM05D000031 ORTHO05D001864 3.3e-07 58.5 60 51.7
Thhalv10015172m.g Eutrema salsugineum HOM05D009057 ORTHO05D011698 3.3e-07 58.5 77 49.4
Ah.01g023650 Amaranthus hybridus HOM05D007574 ORTHO05D007552 4.4e-07 58.2 100 42.0
AL6G11310 Arabidopsis lyrata HOM05D009057 ORTHO05D011698 4.4e-07 58.2 82 48.8
AT5G02090 Arabidopsis thaliana HOM05D009057 ORTHO05D011698 4.4e-07 58.2 85 47.1
CARHR131780 Cardamine hirsuta HOM05D009505 ORTHO05D007552 5.7e-07 57.8 90 42.2
Sed0004672 Sechium edule HOM05D039850 ORTHO05D034976 7.5e-07 57.4 101 45.5
Os01g0143900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 1.7e-06 56.2 65 50.8
EL10Ac7g17001 Beta vulgaris HOM05D007574 ORTHO05D007552 2.2e-06 55.8 106 40.6
Os05g0456900 Oryza sativa ssp. japonica HOM05D007574 ORTHO05D007552 2.2e-06 55.8 98 36.7
Prupe.6G068600 Prunus persica HOM05D007574 ORTHO05D007552 2.2e-06 55.8 87 36.8
BcaNung04449 Brassica carinata HOM05D009057 ORTHO05D011698 2.8e-06 55.5 84 45.2
A05p08210 Brassica napus HOM05D009505 ORTHO05D007552 2.8e-06 55.5 88 39.8
Ciclev10027461m.g Citrus clementina HOM05D007574 ORTHO05D007552 2.8e-06 55.5 96 40.6
A04p28920 Brassica napus HOM05D009505 ORTHO05D007552 3.7e-06 55.1 93 39.8
BraA04t18368Z Brassica rapa HOM05D009505 ORTHO05D007552 3.7e-06 55.1 93 39.8
Medtr2g104750 Medicago truncatula HOM05D007574 ORTHO05D007552 6.3e-06 54.3 102 46.1
SHI12715 Sapria himalayana HOM05D007574 ORTHO05D007552 8.2e-06 53.9 52 53.8


User provided reference genes

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