Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G088500 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.3e-65 251.5 125 100.0
Potri.006G088700 Populus trichocarpa HOM05D007791 ORTHO05D000653 5.5e-60 234.2 125 95.2
Potri.006G088616 Populus trichocarpa HOM05D007791 ORTHO05D000653 2.7e-59 231.9 115 100.0
Potri.006G088664 Populus trichocarpa HOM05D007791 ORTHO05D000653 3.4e-33 145.2 74 94.6
Ciclev10013177m.g Citrus clementina HOM05D007791 ORTHO05D000653 8.3e-24 114.0 110 57.3
Atru.chr8.2026 Acer truncatum HOM05D007791 ORTHO05D000653 3.2e-23 112.1 104 57.7
TWI74G0823 Tripterygium wilfordii HOM05D007791 ORTHO05D000653 1.6e-22 109.8 102 56.9
Duzib106G0736 Durio zibethinus HOM05D007791 ORTHO05D000653 2.0e-22 109.4 116 52.6
Manes.09G094800 Manihot esculenta HOM05D007791 ORTHO05D000653 2.0e-22 109.4 96 59.4
Atru.chr8.2017 Acer truncatum HOM05D007791 ORTHO05D000653 2.7e-22 109.0 104 56.7
CSS0023434 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.7e-22 109.0 101 58.4
CSS0036268 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 2.7e-22 109.0 101 58.4
PGR031G1849 Punica granatum HOM05D007791 ORTHO05D000653 6.0e-22 107.8 104 54.8
Gohir.D04G122900 Gossypium hirsutum HOM05D007791 ORTHO05D000653 1.3e-21 106.7 102 55.9
COL.COLO4_14751 Corchorus olitorius HOM05D007791 ORTHO05D000653 1.7e-21 106.3 101 57.4
Glyma.11G151000 Glycine max HOM05D007791 ORTHO05D000653 2.3e-21 105.9 106 56.6
Gohir.A04G084100 Gossypium hirsutum HOM05D007791 ORTHO05D000653 2.3e-21 105.9 102 55.9
Dinv37146 Davidia involucrata HOM05D007791 ORTHO05D000653 3.0e-21 105.5 99 58.6
Gorai.012G105800 Gossypium raimondii HOM05D007791 ORTHO05D000653 3.0e-21 105.5 102 54.9
GSVIVG01034125001 Vitis vinifera HOM05D007791 ORTHO05D000653 3.0e-21 105.5 111 53.2
Duzib106G0108 Durio zibethinus HOM05D007791 ORTHO05D000653 6.6e-21 104.4 101 56.4
Lj3g0002224 Lotus japonicus HOM05D007791 ORTHO05D000653 1.5e-20 103.2 88 60.2
Medtr3g020970 Medicago truncatula HOM05D007791 ORTHO05D000653 2.5e-20 102.4 101 57.4
TPR.G3886 Trifolium pratense HOM05D007791 ORTHO05D000653 3.3e-20 102.1 103 57.3
Psat1g089000 Pisum sativum HOM05D007791 ORTHO05D000653 1.2e-19 100.1 88 59.1
Thecc.05G034600 Theobroma cacao HOM05D007791 ORTHO05D000653 1.6e-19 99.8 100 55.0
Cc04_g14510 Coffea canephora HOM05D007791 ORTHO05D000653 2.1e-19 99.4 99 51.5
Phvul.005G032000 Phaseolus vulgaris HOM05D007791 ORTHO05D000653 4.7e-19 98.2 101 56.4
Thecc.05G034800 Theobroma cacao HOM05D007791 ORTHO05D000653 6.2e-19 97.8 100 53.0
TPR.G35313 Trifolium pratense HOM05D007791 ORTHO05D000653 8.0e-19 97.4 103 55.3
Rhsim05G0195100 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.1e-18 97.1 112 50.9
Oeu006881.1 Olea europaea HOM05D007791 ORTHO05D000653 4.0e-18 95.1 99 50.5
Solyc06g069400.4 Solanum lycopersicum HOM05D002101 ORTHO05D002126 4.0e-18 95.1 99 49.5
CSS0008915 Camellia sinensis var. sinensis HOM05D007791 ORTHO05D000653 6.8e-18 94.4 72 65.3
PGSC0003DMG400004064 Solanum tuberosum HOM05D007791 ORTHO05D000653 1.2e-17 93.6 99 49.5
DCAR_010421 Daucus carota HOM05D007791 ORTHO05D000653 1.5e-17 93.2 99 49.5
TAR623G1446 Trochodendron aralioides HOM05D007791 ORTHO05D000653 3.4e-17 92.0 104 48.1
Duzib106G1185 Durio zibethinus HOM05D007791 ORTHO05D000653 7.5e-17 90.9 94 52.1
Lsat_1_v5_gn_5_153840 Lactuca sativa HOM05D007791 ORTHO05D000653 7.5e-17 90.9 69 62.3
Cpa.g.sc228.1 Carica papaya HOM05D007791 ORTHO05D000653 9.8e-17 90.5 108 50.9
Migut.J00302 Erythranthe guttata HOM05D007791 ORTHO05D000653 9.8e-17 90.5 74 59.5
Sopen06g026680 Solanum pennellii HOM05D007791 ORTHO05D000653 9.8e-17 90.5 99 47.5
TPR.G3882 Trifolium pratense HOM05D007791 ORTHO05D000653 2.9e-16 89.0 101 50.5
Nitab4.5_0002449g0040 Nicotiana tabacum HOM05D002101 ORTHO05D002126 3.7e-16 88.6 101 44.6
Nitab4.5_0007505g0010 Nicotiana tabacum HOM05D002101 ORTHO05D002126 4.9e-16 88.2 73 53.4
Peaxi162Scf00013g00738 Petunia axillaris HOM05D007791 ORTHO05D000653 4.9e-16 88.2 99 48.5
CAN.G587.57 Capsicum annuum HOM05D007791 ORTHO05D000653 1.4e-15 86.7 91 48.4
Rhsim05G0195200 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.9e-15 86.3 99 50.5
ATR0559G001 Amborella trichopoda HOM05D007791 ORTHO05D000653 7.0e-15 84.3 107 43.0
ECA248G2888 Erigeron canadensis HOM05D007791 ORTHO05D000653 7.0e-15 84.3 97 50.5
Zm00001eb138720 Zea mays HOM05D007791 ORTHO05D000653 7.0e-15 84.3 96 47.9
Rhsim05G0195400 Rhododendron simsii HOM05D007791 ORTHO05D000653 1.2e-14 83.6 99 49.5
PSO063G1561 Papaver somniferum HOM05D007791 ORTHO05D000653 2.1e-14 82.8 93 47.3
HanXRQChr05g0136961 Helianthus annuus HOM05D007791 ORTHO05D000653 1.7e-13 79.7 99 44.4
Medtr3g020800 Medicago truncatula HOM05D007791 ORTHO05D000653 1.7e-13 79.7 101 47.5
arahy.Tifrunner.gnm1.ann1.NKRP5F Arachis hypogaea HOM05D007791 ORTHO05D000653 2.3e-13 79.3 98 43.9
arahy.Tifrunner.gnm1.ann1.0A2T8K Arachis hypogaea HOM05D007791 ORTHO05D000653 3.9e-13 78.6 99 43.4
Eucgr.A01291 Eucalyptus grandis HOM05D007791 ORTHO05D000653 5.1e-13 78.2 65 58.5
Medtr3g020930 Medicago truncatula HOM05D007791 ORTHO05D000653 1.1e-12 77.0 70 54.3
CsaV3_4G025200 Cucumis sativus L. HOM05D007791 ORTHO05D000653 7.3e-12 74.3 100 43.0
HPP92_012980 Vanilla planifolia HOM05D007791 ORTHO05D000653 3.6e-11 72.0 70 48.6
Nitab4.5_0007505g0030 Nicotiana tabacum HOM05D007791 ORTHO05D000653 5.2e-10 68.2 65 46.2
Aqoxy1G00874 Aquilegia oxysepala HOM05D007791 ORTHO05D000653 1.2e-09 67.0 62 53.2
Pp3c23_22180 Physcomitrium patens HOM05D007791 ORTHO05D000653 1.5e-09 66.6 71 45.1
Hund02894 Selenicereus undatus HOM05D001004 ORTHO05D000653 3.4e-09 65.5 64 50.0
SEGI_18954 Sequoiadendron giganteum HOM05D001004 ORTHO05D000653 3.4e-09 65.5 73 43.8
CDE02G1758 Ceratophyllum demersum HOM05D001004 ORTHO05D000653 4.4e-09 65.1 64 50.0
RhsimUnG0178600 Rhododendron simsii HOM05D007791 ORTHO05D000653 4.4e-09 65.1 94 44.7
Zm00001eb267030 Zea mays HOM05D007791 ORTHO05D000653 5.8e-09 64.7 74 48.6
CBR_g37573 Chara braunii HOM05D007791 ORTHO05D000653 1.7e-08 63.2 64 48.4
Medtr3g020880 Medicago truncatula HOM05D007791 ORTHO05D000653 1.7e-08 63.2 68 51.5
RcHm_v2.0_Chr4g0390821 Rosa chinensis HOM05D001004 ORTHO05D000653 1.7e-08 63.2 66 45.5
SEGI_12735 Sequoiadendron giganteum HOM05D007791 ORTHO05D000653 2.2e-08 62.8 88 36.4
HPP92_019238 Vanilla planifolia HOM05D007791 ORTHO05D000653 2.2e-08 62.8 62 54.8
ClCG09G008110 Citrullus lanatus HOM05D001004 ORTHO05D000653 2.9e-08 62.4 64 50.0
Gohir.D11G134300 Gossypium hirsutum HOM05D001004 ORTHO05D000653 2.9e-08 62.4 64 45.3
Gorai.007G143600 Gossypium raimondii HOM05D001004 ORTHO05D000653 2.9e-08 62.4 64 45.3
COL.COLO4_05576 Corchorus olitorius HOM05D001004 ORTHO05D000653 3.7e-08 62.0 71 43.7
FvH4_4g02940 Fragaria vesca HOM05D001004 ORTHO05D000653 3.7e-08 62.0 64 45.3
FAN17G1223 Fragaria x ananassa HOM05D001004 ORTHO05D000653 3.7e-08 62.0 64 45.3
vmacro08656 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 3.7e-08 62.0 64 46.9
CANSAT78G0302 Cannabis sativa HOM05D001004 ORTHO05D000653 4.9e-08 61.6 71 49.3
CBR_g16882 Chara braunii HOM05D005922 ORTHO05D006934 6.4e-08 61.2 66 42.4
Prupe.1G032900 Prunus persica HOM05D001004 ORTHO05D000653 6.4e-08 61.2 66 42.4
COL.COLO4_05577 Corchorus olitorius HOM05D001004 ORTHO05D000653 8.3e-08 60.8 70 44.3
Gorai.007G143400 Gossypium raimondii HOM05D001004 ORTHO05D000653 8.3e-08 60.8 66 43.9
Thecc.01G264300 Theobroma cacao HOM05D001004 ORTHO05D000653 8.3e-08 60.8 69 44.9
Os12g0548700 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.1e-07 60.5 64 51.6
Potri.011G110100 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.1e-07 60.5 66 45.5
Potri.011G110400 Populus trichocarpa HOM05D001004 ORTHO05D000653 1.1e-07 60.5 66 45.5
Zm00001eb355990 Zea mays HOM05D007791 ORTHO05D000653 1.1e-07 60.5 70 44.3
Os12g0548401 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 1.4e-07 60.1 70 45.7
Nn3g19560 Nelumbo nucifera HOM05D001004 ORTHO05D000653 1.9e-07 59.7 64 42.2
TAR633G2777 Trochodendron aralioides HOM05D001004 ORTHO05D000653 1.9e-07 59.7 64 48.4
Haze_24569 Corylus avellana HOM05D001004 ORTHO05D000653 2.4e-07 59.3 65 47.7
Manes.05G086480 Manihot esculenta HOM05D001004 ORTHO05D000653 2.4e-07 59.3 69 43.5
RhsimUnG0178500 Rhododendron simsii HOM05D007791 ORTHO05D000653 2.4e-07 59.3 65 47.7
RcHm_v2.0_Chr4g0390831 Rosa chinensis HOM05D001004 ORTHO05D000653 2.4e-07 59.3 64 45.3
RcHm_v2.0_Chr4g0391001 Rosa chinensis HOM05D001004 ORTHO05D000653 2.4e-07 59.3 62 43.5
vmacro08637 Vaccinium macrocarpon HOM05D007791 ORTHO05D000653 2.4e-07 59.3 62 45.2
Manes.05G086329 Manihot esculenta HOM05D001004 ORTHO05D000653 3.2e-07 58.9 69 43.5
Os12g0437800 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 3.2e-07 58.9 66 47.0
GSVIVG01018141001 Vitis vinifera HOM05D001004 ORTHO05D000653 4.1e-07 58.5 67 46.3
Gohir.A11G128500 Gossypium hirsutum HOM05D001004 ORTHO05D000653 5.4e-07 58.2 64 45.3
Os01g0615050 Oryza sativa ssp. japonica HOM05D007791 ORTHO05D000653 5.4e-07 58.2 64 46.9
Sed0016936 Sechium edule HOM05D001004 ORTHO05D000653 5.4e-07 58.2 64 45.3
Sed0018468 Sechium edule HOM05D001004 ORTHO05D000653 5.4e-07 58.2 64 43.8
Thecc.10G077500 Theobroma cacao HOM05D001004 ORTHO05D000653 5.4e-07 58.2 64 45.3
Thecc.10G077900 Theobroma cacao HOM05D001004 ORTHO05D000653 5.4e-07 58.2 64 45.3
arahy.Tifrunner.gnm1.ann1.M1DDN9 Arachis hypogaea HOM05D001004 ORTHO05D000653 7.1e-07 57.8 65 46.2
Lj5g0001616 Lotus japonicus HOM05D001004 ORTHO05D000653 7.1e-07 57.8 75 42.7
PGSC0003DMG400011009 Solanum tuberosum HOM05D007791 ORTHO05D028502 7.1e-07 57.8 69 42.0
Oeu002604.1 Olea europaea HOM05D001004 ORTHO05D000653 9.2e-07 57.4 71 39.4
Thecc.10G077800 Theobroma cacao HOM05D001004 ORTHO05D000653 9.2e-07 57.4 64 45.3
MD13G1208800 Malus domestica HOM05D001004 ORTHO05D000653 1.2e-06 57.0 64 42.2
Prupe.8G229400 Prunus persica HOM05D001004 ORTHO05D000653 1.2e-06 57.0 64 40.6
HPP92_019239 Vanilla planifolia HOM05D007791 ORTHO05D000653 1.2e-06 57.0 64 43.8
Ciclev10007070m.g Citrus clementina HOM05D001004 ORTHO05D000653 1.6e-06 56.6 71 38.0
Gohir.D11G134150 Gossypium hirsutum HOM05D001004 ORTHO05D000653 1.6e-06 56.6 66 43.9
Gorai.007G143700 Gossypium raimondii HOM05D001004 ORTHO05D000653 1.6e-06 56.6 64 45.3
Lj5g0010722 Lotus japonicus HOM05D001004 ORTHO05D000653 1.6e-06 56.6 64 42.2
CAN.G324.21 Capsicum annuum HOM05D007791 ORTHO05D028502 2.1e-06 56.2 63 42.9
Ciclev10022906m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.1e-06 56.2 64 43.8
arahy.Tifrunner.gnm1.ann1.AUM5GA Arachis hypogaea HOM05D001004 ORTHO05D000653 2.7e-06 55.8 65 46.2
Ciclev10007123m.g Citrus clementina HOM05D001004 ORTHO05D000653 2.7e-06 55.8 71 39.4
Thecc.10G078300 Theobroma cacao HOM05D001004 ORTHO05D000653 2.7e-06 55.8 64 43.8
TPR.G18577 Trifolium pratense HOM05D001004 ORTHO05D000653 2.7e-06 55.8 64 45.3
Zm00001eb267000 Zea mays HOM05D007791 ORTHO05D000653 2.7e-06 55.8 64 43.8
MELO3C029118.2 Cucumis melo HOM05D001004 ORTHO05D000653 3.5e-06 55.5 61 42.6
DCAR_018459 Daucus carota HOM05D000077 ORTHO05D000552 3.5e-06 55.5 64 39.1
Migut.A00976 Erythranthe guttata HOM05D001004 ORTHO05D000653 3.5e-06 55.5 64 42.2
MD16G1210400 Malus domestica HOM05D001004 ORTHO05D000653 3.5e-06 55.5 64 45.3
Medtr5g090250 Medicago truncatula HOM05D001004 ORTHO05D000653 3.5e-06 55.5 64 45.3
Prupe.I000200 Prunus persica HOM05D001004 ORTHO05D000653 3.5e-06 55.5 71 42.3
Sabra11G0097900 Salix brachista HOM05D001004 ORTHO05D000653 3.5e-06 55.5 64 43.8
Sabra11G0098000 Salix brachista HOM05D001004 ORTHO05D000653 3.5e-06 55.5 64 43.8
EL10Ac5g10441 Beta vulgaris HOM05D001004 ORTHO05D000653 4.6e-06 55.1 69 43.5
CiPaw.01G189700 Carya illinoinensis HOM05D001004 ORTHO05D000653 4.6e-06 55.1 64 43.8
FvH4_4g02840 Fragaria vesca HOM05D001004 ORTHO05D000653 4.6e-06 55.1 64 40.6
Nitab4.5_0000754g0170 Nicotiana tabacum HOM05D001004 ORTHO05D000653 4.6e-06 55.1 65 46.2
Thecc.10G077700 Theobroma cacao HOM05D001004 ORTHO05D000653 4.6e-06 55.1 64 43.8
arahy.Tifrunner.gnm1.ann1.KV3BZC Arachis hypogaea HOM05D001004 ORTHO05D000653 6.0e-06 54.7 64 42.2
CsaV3_7G026940 Cucumis sativus L. HOM05D001004 ORTHO05D000653 6.0e-06 54.7 64 42.2
Dinv44643 Davidia involucrata HOM05D001004 ORTHO05D000653 6.0e-06 54.7 64 40.6
Medtr1g070335 Medicago truncatula HOM05D001004 ORTHO05D000653 6.0e-06 54.7 64 42.2
Cfa006068 Carpinus fangiana HOM05D001004 ORTHO05D000653 7.8e-06 54.3 65 44.6
ClCG07G000780 Citrullus lanatus HOM05D007791 ORTHO05D044567 7.8e-06 54.3 71 40.8
Ciclev10006212m.g Citrus clementina HOM05D001004 ORTHO05D000653 7.8e-06 54.3 64 45.3
PSO384G5145 Papaver somniferum HOM05D001004 ORTHO05D000653 7.8e-06 54.3 64 43.8
Sopen10g034330 Solanum pennellii HOM05D007791 ORTHO05D028502 7.8e-06 54.3 69 40.6
Thecc.10G078100 Theobroma cacao HOM05D001004 ORTHO05D000653 7.8e-06 54.3 64 43.8
Thecc.10G078200 Theobroma cacao HOM05D001004 ORTHO05D000653 7.8e-06 54.3 64 43.8


User provided reference genes

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