Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G088200 Populus trichocarpa HOM05D005845 ORTHO05D007067 2.0e-59 232.3 120 100.0
Sabra06G0067200 Salix brachista HOM05D000102 ORTHO05D004225 6.5e-50 200.7 113 90.3
GSVIVG01034129001 Vitis vinifera HOM05D005845 ORTHO05D007067 1.4e-36 156.4 123 69.1
Hma1.2p1_0936F.1_g238990 Hydrangea macrophylla HOM05D005845 ORTHO05D007067 2.4e-36 155.6 116 70.7
Ciclev10013078m.g Citrus clementina HOM05D005845 ORTHO05D007067 1.2e-35 153.3 121 66.1
CSS0047206 Camellia sinensis var. sinensis HOM05D005845 ORTHO05D007067 2.0e-35 152.5 122 69.7
Gorai.009G405900 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.0e-35 152.5 120 68.3
Gohir.D04G102600 Gossypium hirsutum HOM05D005845 ORTHO05D007067 4.5e-35 151.4 120 67.5
COL.COLO4_14759 Corchorus olitorius HOM05D005845 ORTHO05D007067 7.7e-35 150.6 120 67.5
Manes.09G092274 Manihot esculenta HOM05D005845 ORTHO05D007067 1.7e-34 149.4 117 63.2
Gohir.D07G011900 Gossypium hirsutum HOM05D005845 ORTHO05D007067 2.2e-34 149.1 120 68.3
Gorai.001G012600 Gossypium raimondii HOM05D005845 ORTHO05D007067 2.2e-34 149.1 120 68.3
Sed0011119 Sechium edule HOM05D005845 ORTHO05D007067 2.9e-34 148.7 121 67.8
Gohir.A07G012100 Gossypium hirsutum HOM05D005845 ORTHO05D007067 5.0e-34 147.9 120 66.7
vmacro20178 Vaccinium macrocarpon HOM05D005845 ORTHO05D007067 8.5e-34 147.1 102 71.6
Atru.chr8.2014 Acer truncatum HOM05D005320 ORTHO05D007922 1.4e-33 146.4 123 67.5
CiPaw.10G147000 Carya illinoinensis HOM05D005845 ORTHO05D007067 1.4e-33 146.4 121 67.8
ClCG10G021330 Citrullus lanatus HOM05D005845 ORTHO05D007067 1.4e-33 146.4 121 65.3
QL07p030115 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-33 146.4 119 65.5
QL07p030897 Quercus lobata HOM05D005845 ORTHO05D007067 1.4e-33 146.4 119 65.5
Rhsim05G0194900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.4e-33 146.4 121 67.8
Nn2g13425 Nelumbo nucifera HOM05D005845 ORTHO05D007067 1.9e-33 146.0 122 65.6
RcHm_v2.0_Chr3g0466071 Rosa chinensis HOM05D005845 ORTHO05D007067 2.5e-33 145.6 121 63.6
Duzib106G0947 Durio zibethinus HOM05D005845 ORTHO05D007067 7.2e-33 144.1 120 65.8
Thecc.05G035600 Theobroma cacao HOM05D005845 ORTHO05D007067 7.2e-33 144.1 120 65.0
Prupe.6G259200 Prunus persica HOM05D005845 ORTHO05D007067 9.4e-33 143.7 121 64.5
TWI74G0153 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 9.4e-33 143.7 117 65.0
Cpa.g.sc3458.2 Carica papaya HOM05D005845 ORTHO05D007067 1.6e-32 142.9 118 66.1
Gohir.A04G065200 Gossypium hirsutum HOM05D005845 ORTHO05D007067 1.6e-32 142.9 123 64.2
Lj3A964T57 Lonicera japonica HOM05D005845 ORTHO05D007067 2.1e-32 142.5 122 62.3
Haze_20829 Corylus avellana HOM05D005320 ORTHO05D007922 2.7e-32 142.1 121 65.3
PGR004G0892 Punica granatum HOM05D005845 ORTHO05D007067 3.6e-32 141.7 115 64.3
FvH4_6g13240 Fragaria vesca HOM05D005845 ORTHO05D007067 6.1e-32 141.0 121 63.6
FAN14G4222 Fragaria x ananassa HOM05D005845 ORTHO05D007067 6.1e-32 141.0 121 63.6
FAN02G1947 Fragaria x ananassa HOM05D005845 ORTHO05D007067 1.0e-31 140.2 121 62.8
TWI77G0787 Tripterygium wilfordii HOM05D005845 ORTHO05D007067 1.0e-31 140.2 114 65.8
Cc06_g02340 Coffea canephora HOM05D005845 ORTHO05D007067 1.4e-31 139.8 120 62.5
TAR633G1058 Trochodendron aralioides HOM05D005845 ORTHO05D007067 2.3e-31 139.0 120 60.8
DCAR_028759 Daucus carota HOM05D005845 ORTHO05D007067 3.0e-31 138.7 121 66.1
TAR633G1228 Trochodendron aralioides HOM05D005845 ORTHO05D007067 6.7e-31 137.5 121 62.0
CsaV3_3G034730 Cucumis sativus L. HOM05D005845 ORTHO05D007067 1.5e-30 136.3 123 63.4
ECA233G0482 Erigeron canadensis HOM05D005845 ORTHO05D007067 3.3e-30 135.2 110 65.5
Nitab4.5_0003394g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 3.3e-30 135.2 120 66.7
arahy.Tifrunner.gnm1.ann1.1Q4DHH Arachis hypogaea HOM05D005845 ORTHO05D007067 4.4e-30 134.8 120 61.7
Eucgr.K03081 Eucalyptus grandis HOM05D005845 ORTHO05D007067 4.4e-30 134.8 122 61.5
arahy.Tifrunner.gnm1.ann1.CX8U58 Arachis hypogaea HOM05D005845 ORTHO05D007067 5.7e-30 134.4 119 62.2
arahy.Tifrunner.gnm1.ann1.D19TT3 Arachis hypogaea HOM05D005845 ORTHO05D007067 5.7e-30 134.4 120 62.5
Eucgr.K03092 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.7e-30 134.4 83 78.3
Glyma.07G135300 Glycine max HOM05D005845 ORTHO05D007067 7.4e-30 134.0 120 59.2
HanXRQChr02g0050481 Helianthus annuus HOM05D005845 ORTHO05D007067 1.3e-29 133.3 81 76.5
Rhsim04G0158900 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.3e-29 133.3 132 61.4
Migut.L01960 Erythranthe guttata HOM05D005845 ORTHO05D007067 2.2e-29 132.5 89 73.0
Nitab4.5_0000705g0030 Nicotiana tabacum HOM05D005845 ORTHO05D007067 2.2e-29 132.5 121 63.6
MD12G1145500 Malus domestica HOM05D005845 ORTHO05D007067 2.8e-29 132.1 120 61.7
MD04G1132800 Malus domestica HOM05D005845 ORTHO05D007067 3.7e-29 131.7 120 60.8
EL10Ac2g03022 Beta vulgaris HOM05D005845 ORTHO05D007067 4.8e-29 131.3 113 61.1
FAN05G4617 Fragaria x ananassa HOM05D005845 ORTHO05D007067 4.8e-29 131.3 121 61.2
Lj1g0012131 Lotus japonicus HOM05D005845 ORTHO05D007067 6.3e-29 131.0 114 59.6
MBI05_g35632_MAGBIO Magnolia biondii HOM05D005845 ORTHO05D007067 6.3e-29 131.0 111 60.4
VMungo1383G2075 Vigna mungo HOM05D005845 ORTHO05D007067 6.3e-29 131.0 120 60.8
CANSAT35G1952 Cannabis sativa HOM05D005845 ORTHO05D007067 8.2e-29 130.6 119 60.5
Ca_07339_v3 Cicer arietinum L. HOM05D005845 ORTHO05D007067 8.2e-29 130.6 122 62.3
Psat3g137040 Pisum sativum HOM05D005845 ORTHO05D007067 1.1e-28 130.2 123 60.2
Peaxi162Scf00527g00733 Petunia axillaris HOM05D005845 ORTHO05D007067 1.4e-28 129.8 120 60.0
Sc01g0004490 Simmondsia chinensis HOM05D005845 ORTHO05D007067 1.4e-28 129.8 113 61.9
AUR62018118 Chenopodium quinoa HOM05D005845 ORTHO05D007067 4.1e-28 128.3 80 75.0
THA.LOC104816255 Tarenaya hassleriana HOM05D005845 ORTHO05D007067 5.3e-28 127.9 117 62.4
arahy.Tifrunner.gnm1.ann1.1BNP0N Arachis hypogaea HOM05D005845 ORTHO05D007067 7.0e-28 127.5 121 60.3
PSO513G0176 Papaver somniferum HOM05D005845 ORTHO05D007067 7.0e-28 127.5 88 70.5
Phvul.008G118000 Phaseolus vulgaris HOM05D005845 ORTHO05D007067 7.0e-28 127.5 120 60.0
Lsat_1_v5_gn_6_22520 Lactuca sativa HOM05D005845 ORTHO05D007067 9.1e-28 127.1 86 69.8
Sopen09g005730 Solanum pennellii HOM05D005845 ORTHO05D007067 9.1e-28 127.1 111 62.2
Aqoxy1G00879 Aquilegia oxysepala HOM05D005845 ORTHO05D007067 1.2e-27 126.7 113 58.4
Medtr7g062970 Medicago truncatula HOM05D005845 ORTHO05D007067 1.2e-27 126.7 122 59.0
Lalb_Chr03g0042411 Lupinus albus HOM05D005845 ORTHO05D007067 2.6e-27 125.6 123 59.3
SalBow1G4544 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.6e-27 125.6 116 55.2
SalBow7G2664 Salvia bowleyana HOM05D005845 ORTHO05D007067 2.6e-27 125.6 116 55.2
Hund14261 Selenicereus undatus HOM05D006267 ORTHO05D007490 2.6e-27 125.6 81 74.1
ATR0559G337 Amborella trichopoda HOM05D005845 ORTHO05D007067 4.5e-27 124.8 73 82.2
Solyc09g011010.3 Solanum lycopersicum HOM05D005845 ORTHO05D007067 4.5e-27 124.8 111 61.3
BcaC05g29521 Brassica carinata HOM05D005845 ORTHO05D007067 5.9e-27 124.4 117 59.0
CAN.G597.2 Capsicum annuum HOM05D005845 ORTHO05D007067 1.0e-26 123.6 111 63.1
Zm00001eb299980 Zea mays HOM05D005845 ORTHO05D007067 1.3e-26 123.2 116 58.6
BraA05t22747Z Brassica rapa HOM05D005845 ORTHO05D007067 1.7e-26 122.9 117 59.0
AUR62034449 Chenopodium quinoa HOM05D005845 ORTHO05D007067 1.7e-26 122.9 102 61.8
MELO3C009241.2 Cucumis melo HOM05D005845 ORTHO05D007067 1.7e-26 122.9 154 50.6
Sp3g07700 Schrenkiella parvula HOM05D005845 ORTHO05D007067 2.2e-26 122.5 116 56.9
BcaC05g29660 Brassica carinata HOM05D005845 ORTHO05D007067 2.9e-26 122.1 116 57.8
A03p00540 Brassica napus HOM05D005845 ORTHO05D007067 2.9e-26 122.1 79 74.7
C05p58690 Brassica napus HOM05D005845 ORTHO05D007067 2.9e-26 122.1 116 57.8
BolC5t34518H Brassica oleracea HOM05D005845 ORTHO05D007067 2.9e-26 122.1 116 57.8
BraA03t09444Z Brassica rapa HOM05D005845 ORTHO05D007067 2.9e-26 122.1 79 74.7
CARHR211240 Cardamine hirsuta HOM05D005845 ORTHO05D007067 3.8e-26 121.7 81 72.8
Sp6g40320 Schrenkiella parvula HOM05D005845 ORTHO05D007067 3.8e-26 121.7 119 60.5
Carub.0006s0096 Capsella rubella HOM05D005845 ORTHO05D007067 5.0e-26 121.3 117 57.3
CARHR083690 Cardamine hirsuta HOM05D005845 ORTHO05D007067 5.0e-26 121.3 118 56.8
PGSC0003DMG400008901 Solanum tuberosum HOM05D005845 ORTHO05D007067 5.0e-26 121.3 111 60.4
BcaB01g06068 Brassica carinata HOM05D005845 ORTHO05D007067 6.5e-26 120.9 79 73.4
A05p39650 Brassica napus HOM05D005845 ORTHO05D007067 6.5e-26 120.9 117 58.1
C03p00800 Brassica napus HOM05D005845 ORTHO05D007067 6.5e-26 120.9 79 73.4
BolC3t12643H Brassica oleracea HOM05D005845 ORTHO05D007067 6.5e-26 120.9 79 73.4
PSO339G6396 Papaver somniferum HOM05D005845 ORTHO05D007067 6.5e-26 120.9 116 56.9
Eucgr.G01508 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.5e-26 120.6 64 89.1
Thhalv10015070m.g Eutrema salsugineum HOM05D005845 ORTHO05D007067 8.5e-26 120.6 116 60.3
Os05g0292800 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 8.5e-26 120.6 120 57.5
AL6G11350 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 1.5e-25 119.8 73 79.5
Aa31LG3G1810 Aethionema arabicum HOM05D005845 ORTHO05D007067 1.9e-25 119.4 115 55.7
SEGI_39626 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.9e-25 119.4 83 73.5
Dinv35574 Davidia involucrata HOM05D005845 ORTHO05D007067 2.5e-25 119.0 99 65.7
Actinidia11275 Actinidia chinensis HOM05D005845 ORTHO05D007067 4.2e-25 118.2 90 64.4
CDE06G2558 Ceratophyllum demersum HOM05D000816 ORTHO05D009154 4.2e-25 118.2 88 63.6
AT5G02120 Arabidopsis thaliana HOM05D005845 ORTHO05D007067 9.4e-25 117.1 116 56.9
BcaB01g06213 Brassica carinata HOM05D005845 ORTHO05D007067 1.2e-24 116.7 118 57.6
AL3G20470 Arabidopsis lyrata HOM05D005845 ORTHO05D007067 2.7e-24 115.5 120 58.3
Os12g0480100 Oryza sativa ssp. japonica HOM05D005845 ORTHO05D007067 1.4e-23 113.2 74 67.6
Eucgr.K03089 Eucalyptus grandis HOM05D005845 ORTHO05D007067 5.2e-23 111.3 114 55.3
Eucgr.K03094 Eucalyptus grandis HOM05D005845 ORTHO05D007067 1.2e-22 110.2 64 81.2
Lalb_Chr01g0022631 Lupinus albus HOM05D005845 ORTHO05D007067 1.2e-22 110.2 123 52.0
TAR369G0629 Trochodendron aralioides HOM05D005845 ORTHO05D007067 1.5e-22 109.8 98 62.2
Carub.0003s0843 Capsella rubella HOM05D005845 ORTHO05D007067 2.6e-22 109.0 119 52.9
Zm00001eb090340 Zea mays HOM05D005845 ORTHO05D007067 3.3e-22 108.6 64 76.6
Pp3c18_21050 Physcomitrium patens HOM05D005845 ORTHO05D007067 4.4e-22 108.2 98 56.1
Pp3c22_8010 Physcomitrium patens HOM05D005845 ORTHO05D007067 2.2e-21 105.9 119 47.1
AagrBONN_evm.TU.Sc2ySwM_344.1593 Anthoceros agrestis HOM05D005845 ORTHO05D007067 5.3e-20 101.3 75 62.7
Oeu023072.1 Olea europaea HOM05D005845 ORTHO05D007067 2.7e-19 99.0 59 76.3
Mapoly0151s0005 Marchantia polymorpha HOM05D005845 ORTHO05D007067 3.8e-18 95.1 71 62.0
Eucgr.G00292 Eucalyptus grandis HOM05D005845 ORTHO05D007067 8.5e-18 94.0 49 89.8
HPP92_019240 Vanilla planifolia HOM05D005845 ORTHO05D007067 5.5e-17 91.3 93 52.7
Zm00001eb372120 Zea mays HOM05D005845 ORTHO05D007067 1.2e-16 90.1 88 53.4
Glyma.18G185300 Glycine max HOM05D005845 ORTHO05D007067 2.7e-16 89.0 119 47.1
Eucgr.K03086 Eucalyptus grandis HOM05D005845 ORTHO05D007067 3.6e-16 88.6 99 51.5
SEGI_14936 Sequoiadendron giganteum HOM05D005845 ORTHO05D007067 1.0e-15 87.0 62 69.4
TPR.G22204 Trifolium pratense HOM05D000026 ORTHO05D007067 5.7e-14 81.3 109 47.7
CBR_g4596 Chara braunii HOM05D005845 ORTHO05D007067 9.8e-14 80.5 73 53.4
Rhsim04G0160800 Rhododendron simsii HOM05D005845 ORTHO05D007067 1.7e-13 79.7 133 44.4
TPR.G34843 Trifolium pratense HOM05D005845 ORTHO05D007067 1.4e-12 76.6 42 78.6
Cre02.g109950 Chlamydomonas reinhardtii HOM05D005845 ORTHO05D007067 8.0e-08 60.8 97 35.1
MCO09G323 Micromonas commoda HOM05D005845 ORTHO05D007067 1.2e-06 57.0 76 38.2


User provided reference genes

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