Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G087300 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.9e-150 535.8 262 100.0
Sabra06G0066600 Salix brachista HOM05D007762 ORTHO05D003096 1.1e-121 440.3 262 84.0
Potri.016G100100 Populus trichocarpa HOM05D007762 ORTHO05D008066 1.5e-83 313.5 262 67.2
Manes.09G092000 Manihot esculenta HOM05D007762 ORTHO05D008066 8.0e-61 238.0 242 55.8
TWI74G1309 Tripterygium wilfordii HOM05D007762 ORTHO05D008066 1.8e-57 226.9 264 52.3
Dinv35582 Davidia involucrata HOM05D007762 ORTHO05D008066 1.5e-54 217.2 265 47.5
Cfa017354 Carpinus fangiana HOM05D007762 ORTHO05D008066 4.7e-53 212.2 263 47.1
GSVIVG01034144001 Vitis vinifera HOM05D007762 ORTHO05D008066 2.0e-48 196.8 263 44.5
TAR633G0209 Trochodendron aralioides HOM05D007762 ORTHO05D008066 1.7e-47 193.7 265 46.0
Dinv37157 Davidia involucrata HOM05D007762 ORTHO05D008066 6.6e-47 191.8 261 43.7
RcHm_v2.0_Chr3g0466291 Rosa chinensis HOM05D007762 ORTHO05D008066 2.5e-46 189.9 268 48.1
QL07p048844 Quercus lobata HOM05D007762 ORTHO05D008066 7.3e-46 188.3 265 43.8
CiPaw.09G195100 Carya illinoinensis HOM05D007762 ORTHO05D008066 1.2e-43 181.0 238 45.4
Actinidia11265 Actinidia chinensis HOM05D007762 ORTHO05D008066 1.5e-43 180.6 264 43.9
FAN05G0447 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.5e-43 180.6 261 47.5
FAN09G1623 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.7e-42 177.2 261 47.1
CsaV3_3G034800 Cucumis sativus L. HOM05D007762 ORTHO05D008066 2.9e-42 176.4 264 40.9
FvH4_6g13420 Fragaria vesca HOM05D007762 ORTHO05D008066 6.4e-42 175.3 261 46.7
FAN14G2701 Fragaria x ananassa HOM05D007762 ORTHO05D008066 6.4e-42 175.3 261 46.7
MD12G1144400 Malus domestica HOM05D007762 ORTHO05D008066 6.4e-42 175.3 261 42.1
FAN02G3004 Fragaria x ananassa HOM05D007762 ORTHO05D008066 1.9e-41 173.7 260 46.9
CiPaw.10G146800 Carya illinoinensis HOM05D007762 ORTHO05D008066 2.4e-41 173.3 263 40.7
Atru.chr8.1998 Acer truncatum HOM05D007762 ORTHO05D008066 7.0e-41 171.8 267 42.3
Nitab4.5_0008097g0020 Nicotiana tabacum HOM05D007762 ORTHO05D008066 4.6e-40 169.1 264 41.7
ClCG10G021240 Citrullus lanatus HOM05D007762 ORTHO05D008066 6.0e-40 168.7 264 38.6
Nitab4.5_0000527g0210 Nicotiana tabacum HOM05D007762 ORTHO05D008066 1.5e-38 164.1 264 40.9
Rhsim05G0194300 Rhododendron simsii HOM05D007762 ORTHO05D008066 2.5e-38 163.3 265 41.9
Prupe.6G257800 Prunus persica HOM05D007762 ORTHO05D008066 9.5e-38 161.4 239 43.5
Thecc.05G036900 Theobroma cacao HOM05D007762 ORTHO05D008066 1.6e-37 160.6 257 42.0
Oeu023077.1 Olea europaea HOM05D007762 ORTHO05D008066 1.1e-36 157.9 267 40.8
vmacro20167 Vaccinium macrocarpon HOM05D007762 ORTHO05D008066 2.3e-36 156.8 266 42.5
Hma1.2p1_1889F.1_g306660 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 4.0e-36 156.0 272 40.8
Hma1.2p1_2197F.1_g316916 Hydrangea macrophylla HOM05D007762 ORTHO05D008066 4.0e-36 156.0 272 40.8
Duzib106G0002 Durio zibethinus HOM05D007762 ORTHO05D008066 1.2e-35 154.5 254 40.6
MD04G1131300 Malus domestica HOM05D007762 ORTHO05D008066 1.5e-35 154.1 237 41.4
Ciclev10013354m.g Citrus clementina HOM05D007762 ORTHO05D008066 2.9e-34 149.8 264 40.9
Sed0022945 Sechium edule HOM05D007762 ORTHO05D008066 2.9e-34 149.8 262 38.5
Lalb_Chr19g0125241 Lupinus albus HOM05D007762 ORTHO05D008066 8.3e-34 148.3 262 37.0
Gohir.D13G098400 Gossypium hirsutum HOM05D007762 ORTHO05D008066 1.4e-33 147.5 262 38.9
PGR004G1606 Punica granatum HOM05D007762 ORTHO05D008066 1.2e-32 144.4 272 39.0
Lj3g0025123 Lotus japonicus HOM05D007762 ORTHO05D008066 2.1e-32 143.7 262 35.9
Gohir.A13G092305 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.8e-32 141.7 262 38.5
Gohir.A13G092310 Gossypium hirsutum HOM05D007762 ORTHO05D008066 7.8e-32 141.7 262 38.5
Gorai.001G249600 Gossypium raimondii HOM05D007762 ORTHO05D008066 1.3e-31 141.0 262 38.2
Eucgr.A01283 Eucalyptus grandis HOM05D007762 ORTHO05D008066 3.9e-31 139.4 264 38.3
Peaxi162Scf00330g00715 Petunia axillaris HOM05D007762 ORTHO05D008066 3.9e-31 139.4 262 40.1
CANSAT11G0018 Cannabis sativa HOM05D007762 ORTHO05D008066 8.6e-31 138.3 271 39.9
Phvul.010G014900 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 8.6e-31 138.3 264 37.5
Glyma.18G183600 Glycine max HOM05D007762 ORTHO05D008066 1.5e-30 137.5 264 37.1
Glyma.07G134000 Glycine max HOM05D007762 ORTHO05D008066 1.9e-30 137.1 264 38.3
Eucgr.K03113 Eucalyptus grandis HOM05D007762 ORTHO05D008066 1.6e-29 134.0 262 36.6
Oeu001858.1 Olea europaea HOM05D007762 ORTHO05D008066 1.6e-29 134.0 242 38.0
MSTRG.26781 Avicennia marina HOM05D007762 ORTHO05D008066 8.1e-29 131.7 264 35.6
COL.COLO4_14776 Corchorus olitorius HOM05D007762 ORTHO05D008066 8.1e-29 131.7 255 37.6
FAN28G1746 Fragaria x ananassa HOM05D007762 ORTHO05D008066 2.3e-28 130.2 214 44.4
Cc10_g11770 Coffea canephora HOM05D007762 ORTHO05D008066 6.8e-28 128.6 240 40.0
Phvul.008G119100 Phaseolus vulgaris HOM05D007762 ORTHO05D008066 6.8e-28 128.6 264 35.6
MELO3C009249.2 Cucumis melo HOM05D007762 ORTHO05D008066 1.5e-27 127.5 231 35.9
Solyc10g086560.3 Solanum lycopersicum HOM05D007762 ORTHO05D008066 2.6e-27 126.7 256 37.9
Sopen10g035940 Solanum pennellii HOM05D007762 ORTHO05D008066 3.4e-27 126.3 243 39.5
CAN.G92.14 Capsicum annuum HOM05D007762 ORTHO05D008066 5.8e-27 125.6 243 38.7
Manes.09G092300 Manihot esculenta HOM05D007762 ORTHO05D008066 6.4e-26 122.1 162 48.8
Aqoxy1G00900 Aquilegia oxysepala HOM05D007762 ORTHO05D008066 1.2e-24 117.9 285 36.5
Nn2g11166 Nelumbo nucifera HOM05D007762 ORTHO05D008066 1.6e-24 117.5 260 37.7
Peaxi162Scf00165g00078 Petunia axillaris HOM05D007762 ORTHO05D008066 6.0e-24 115.5 262 33.6
PGR031G1528 Punica granatum HOM05D007762 ORTHO05D008066 7.8e-24 115.2 269 36.8
Psat3g137360 Pisum sativum HOM05D007762 ORTHO05D008066 1.1e-22 111.3 254 31.1
arahy.Tifrunner.gnm1.ann1.LX2K9J Arachis hypogaea HOM05D007762 ORTHO05D008066 3.3e-22 109.8 262 32.8
Duzib093G0438 Durio zibethinus HOM05D007762 ORTHO05D008066 2.8e-21 106.7 224 37.1
Medtr7g062260 Medicago truncatula HOM05D007762 ORTHO05D008066 1.1e-20 104.8 258 32.2
Cc06_g02460 Coffea canephora HOM05D007762 ORTHO05D008066 1.4e-20 104.4 266 35.0
MBI05_g29690_MAGBIO Magnolia biondii HOM05D007762 ORTHO05D008066 1.8e-20 104.0 253 37.2
MSTRG.5650 Avicennia marina HOM05D007762 ORTHO05D008066 1.2e-19 101.3 265 32.5
TPR.G1723 Trifolium pratense HOM05D007762 ORTHO05D008066 1.2e-19 101.3 257 32.3
Lsat_1_v5_gn_9_33361 Lactuca sativa HOM05D007762 ORTHO05D008066 2.6e-19 100.1 262 34.0
Migut.L01955 Erythranthe guttata HOM05D007762 ORTHO05D008066 6.4e-18 95.5 263 33.8
PGSC0003DMG402019151 Solanum tuberosum HOM05D007762 ORTHO05D008066 9.3e-17 91.7 218 34.4
DCAR_024059 Daucus carota HOM05D007762 ORTHO05D008066 2.5e-14 83.6 250 30.8
arahy.Tifrunner.gnm1.ann1.NCI3TY Arachis hypogaea HOM05D007762 ORTHO05D008066 3.3e-14 83.2 117 41.0
Hund10692 Selenicereus undatus HOM05D021339 ORTHO05D008066 9.6e-14 81.6 240 32.9
PSO339G2571 Papaver somniferum HOM05D007762 ORTHO05D008066 2.1e-13 80.5 286 33.6
Aa31LG1G22530 Aethionema arabicum HOM05D012592 ORTHO05D008066 3.6e-13 79.7 272 32.4
Sc22g0004450 Simmondsia chinensis HOM05D007762 ORTHO05D008066 2.0e-11 73.9 271 29.5
Aa31sc70G60 Aethionema arabicum HOM05D005320 ORTHO05D008066 6.4e-10 68.9 82 46.3
AL4G34600 Arabidopsis lyrata HOM05D005320 ORTHO05D008066 4.2e-09 66.2 94 42.6
BcaB06g29018 Brassica carinata HOM05D005320 ORTHO05D008066 4.2e-09 66.2 92 44.6
EL10As1g23088 Beta vulgaris HOM05D021339 ORTHO05D008066 5.4e-09 65.9 238 30.7
Thhalv10015459m.g Eutrema salsugineum HOM05D012592 ORTHO05D008066 5.4e-09 65.9 98 39.8
SHI12700 Sapria himalayana HOM05D007762 ORTHO05D008066 9.3e-09 65.1 112 38.4
BcaB02g09262 Brassica carinata HOM05D005320 ORTHO05D008066 2.1e-08 63.9 90 41.1
BolC4t28116H Brassica oleracea HOM05D005320 ORTHO05D007922 2.1e-08 63.9 75 49.3
AT2G37678 Arabidopsis thaliana HOM05D005320 ORTHO05D008066 3.5e-08 63.2 95 41.1
C04p10260 Brassica napus HOM05D005320 ORTHO05D008066 4.6e-08 62.8 90 40.0
BolC4t22624H Brassica oleracea HOM05D005320 ORTHO05D008066 4.6e-08 62.8 147 31.3
BraA04t18361Z Brassica rapa HOM05D005320 ORTHO05D008066 6.0e-08 62.4 92 41.3
Thhalv10017273m.g Eutrema salsugineum HOM05D005320 ORTHO05D008066 7.8e-08 62.0 91 40.7
BcaC02g07500 Brassica carinata HOM05D005320 ORTHO05D008066 1.0e-07 61.6 94 40.4
BcaC02g11890 Brassica carinata HOM05D005320 ORTHO05D008066 1.0e-07 61.6 94 37.2
C04p66130 Brassica napus HOM05D005320 ORTHO05D007922 1.0e-07 61.6 94 40.4
A04p28870 Brassica napus HOM05D005320 ORTHO05D007922 1.3e-07 61.2 92 41.3
A05p08290 Brassica napus HOM05D005320 ORTHO05D008066 1.7e-07 60.8 95 38.9
AUR62032040 Chenopodium quinoa HOM05D021339 ORTHO05D008066 1.7e-07 60.8 243 28.8
CARHR131870 Cardamine hirsuta HOM05D005320 ORTHO05D008066 3.0e-07 60.1 87 41.4
Migut.J00315 Erythranthe guttata HOM05D007762 ORTHO05D008066 3.0e-07 60.1 238 28.2
AUR62042387 Chenopodium quinoa HOM05D021339 ORTHO05D008066 6.6e-07 58.9 260 29.2
Sp4g20050 Schrenkiella parvula HOM05D005320 ORTHO05D008066 6.6e-07 58.9 151 29.1
AUR62032712 Chenopodium quinoa HOM05D021339 ORTHO05D008066 8.7e-07 58.5 244 28.3
SGA_v2.0_scaffold75G24961 Striga asiatica HOM05D007762 ORTHO05D008066 8.7e-07 58.5 263 27.0
THA.LOC104805538 Tarenaya hassleriana HOM05D007762 ORTHO05D008066 8.7e-07 58.5 63 55.6
THA.LOC104806558 Tarenaya hassleriana HOM05D005320 ORTHO05D008066 1.9e-06 57.4 68 48.5
BraA10t45372Z Brassica rapa HOM05D012592 ORTHO05D008066 3.3e-06 56.6 170 30.6
CsaV3_4G025130 Cucumis sativus L. HOM05D041730 ORTHO05D034779 7.3e-06 55.5 88 39.8


User provided reference genes

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