Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G084700 Populus trichocarpa HOM05D005967 ORTHO05D005174 8.3e-103 377.1 198 100.0
Sabra06G0064300 Salix brachista HOM05D000729 ORTHO05D001063 4.6e-69 265.0 171 83.6
Dinv37179 Davidia involucrata HOM05D005967 ORTHO05D005174 1.3e-23 114.0 174 44.8
Duzib106G1613 Durio zibethinus HOM05D005967 ORTHO05D005174 1.3e-23 114.0 169 47.3
Manes.11G131200 Manihot esculenta HOM05D005967 ORTHO05D005174 4.4e-19 99.0 188 41.0
Thecc.05G040600 Theobroma cacao HOM05D005967 ORTHO05D005174 4.4e-19 99.0 174 40.8
Manes.09G089000 Manihot esculenta HOM05D005967 ORTHO05D005174 1.3e-18 97.4 173 43.9
Potri.009G030200 Populus trichocarpa HOM05D005967 ORTHO05D005174 1.1e-17 94.4 175 42.3
QL01p032269 Quercus lobata HOM05D005967 ORTHO05D005174 7.0e-17 91.7 167 38.9
TAR623G0987 Trochodendron aralioides HOM05D005967 ORTHO05D005174 2.0e-16 90.1 169 42.6
Oeu036150.1 Olea europaea HOM05D005967 ORTHO05D005174 4.5e-16 89.0 172 41.9
QL07p048152 Quercus lobata HOM05D005967 ORTHO05D005174 1.3e-15 87.4 166 39.8
Duzib150G1094 Durio zibethinus HOM05D005967 ORTHO05D005174 2.2e-15 86.7 177 40.1
Duzib168G1635 Durio zibethinus HOM05D005967 ORTHO05D005174 2.2e-15 86.7 178 39.3
Gohir.D01G212200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 3.8e-15 85.9 82 52.4
Gorai.002G258000 Gossypium raimondii HOM05D005967 ORTHO05D005174 3.8e-15 85.9 82 52.4
Duzib093G0486 Durio zibethinus HOM05D005967 ORTHO05D005174 8.5e-15 84.7 178 38.8
Cfa011491 Carpinus fangiana HOM05D005967 ORTHO05D005174 3.2e-14 82.8 174 39.1
Aqoxy2G02105 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 5.5e-14 82.0 161 41.0
Potri.001G239000 Populus trichocarpa HOM05D005967 ORTHO05D005174 7.2e-14 81.6 174 39.1
Gohir.A01G222700 Gossypium hirsutum HOM05D005967 ORTHO05D005174 9.4e-14 81.3 79 50.6
Manes.04G034400 Manihot esculenta HOM05D005967 ORTHO05D005174 1.6e-13 80.5 166 39.8
Thecc.09G322800 Theobroma cacao HOM05D005967 ORTHO05D005174 2.1e-13 80.1 185 39.5
Duzib170G1125 Durio zibethinus HOM05D005967 ORTHO05D005174 2.7e-13 79.7 169 39.1
TAR636G2062 Trochodendron aralioides HOM05D000645 ORTHO05D000494 3.6e-13 79.3 151 39.1
Haze_24086 Corylus avellana HOM05D005967 ORTHO05D005174 1.0e-12 77.8 174 35.6
Gohir.A07G098000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.0e-12 77.8 180 39.4
Migut.J00334 Erythranthe guttata HOM05D005967 ORTHO05D005174 1.4e-12 77.4 124 42.7
Gohir.D04G121000 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.4e-12 77.4 179 35.8
Gorai.012G103600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.4e-12 77.4 179 35.8
Gorai.003G132600 Gossypium raimondii HOM05D005967 ORTHO05D005174 1.8e-12 77.0 84 52.4
Aqoxy4G02913 Aquilegia oxysepala HOM05D005967 ORTHO05D005174 2.3e-12 76.6 185 36.2
CiPaw.09G192100 Carya illinoinensis HOM05D005967 ORTHO05D005174 2.3e-12 76.6 89 53.9
CiPaw.13G095300 Carya illinoinensis HOM05D005967 ORTHO05D005174 4.0e-12 75.9 172 38.4
Hma1.2p1_1829F.1_g304460 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 5.2e-12 75.5 92 47.8
CSS0030599 Camellia sinensis var. sinensis HOM05D003527 ORTHO05D004099 6.8e-12 75.1 162 38.9
Hma1.2p1_1513F.1_g288050 Hydrangea macrophylla HOM05D005967 ORTHO05D005174 6.8e-12 75.1 169 33.1
Dinv12413 Davidia involucrata HOM05D005967 ORTHO05D005174 8.8e-12 74.7 165 40.0
Gohir.D03G126300 Gossypium hirsutum HOM05D005967 ORTHO05D005174 8.8e-12 74.7 81 50.6
Oeu036152.1 Olea europaea HOM05D005967 ORTHO05D005174 8.8e-12 74.7 176 38.6
Oeu011403.1 Olea europaea HOM05D005967 ORTHO05D005174 1.5e-11 73.9 168 38.7
Gohir.A03G037600 Gossypium hirsutum HOM05D005967 ORTHO05D005174 5.7e-11 72.0 161 36.6
CiPaw.14G068900 Carya illinoinensis HOM05D005967 ORTHO05D005174 1.3e-10 70.9 174 37.9
Ciclev10029478m.g Citrus clementina HOM05D005967 ORTHO05D005174 1.3e-10 70.9 173 38.7
Nn2g10378 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.7e-10 70.5 162 38.9
Nn5g26925 Nelumbo nucifera HOM05D005967 ORTHO05D005174 1.7e-10 70.5 173 37.0
MSTRG.5669 Avicennia marina HOM05D005967 ORTHO05D005174 2.2e-10 70.1 117 41.9
Sed0015612 Sechium edule HOM05D005967 ORTHO05D005174 2.2e-10 70.1 76 55.3
TWI31G0692 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 2.2e-10 70.1 179 34.6
Cfa017389 Carpinus fangiana HOM05D005967 ORTHO05D005174 3.7e-10 69.3 162 33.3
DCAR_005325 Daucus carota HOM05D005967 ORTHO05D005174 3.7e-10 69.3 78 47.4
Oeu007791.1 Olea europaea HOM05D005967 ORTHO05D005174 4.9e-10 68.9 176 39.2
MELO3C020645.2 Cucumis melo HOM05D005967 ORTHO05D005174 6.3e-10 68.6 77 54.5
Gorai.001G110300 Gossypium raimondii HOM05D005967 ORTHO05D005174 8.3e-10 68.2 179 36.9
TWI53G1171 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 8.3e-10 68.2 159 38.4
Atru.chr3.3892 Acer truncatum HOM05D005967 ORTHO05D005174 1.1e-09 67.8 86 48.8
Gohir.D07G102400 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.1e-09 67.8 179 36.3
CSS0050426 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 1.8e-09 67.0 176 35.8
Prupe.6G254000 Prunus persica HOM05D005967 ORTHO05D005174 1.8e-09 67.0 115 45.2
CANSAT54G2543 Cannabis sativa HOM05D005967 ORTHO05D005174 4.1e-09 65.9 73 54.8
Rhsim05G0192000 Rhododendron simsii HOM05D005967 ORTHO05D005174 5.4e-09 65.5 155 34.8
Dinv16991 Davidia involucrata HOM05D005967 ORTHO05D005174 7.0e-09 65.1 169 37.9
Dinv42940 Davidia involucrata HOM05D005967 ORTHO05D005174 7.0e-09 65.1 169 37.9
Dinv43160 Davidia involucrata HOM05D005967 ORTHO05D005174 7.0e-09 65.1 169 37.9
CsaV3_1G034090 Cucumis sativus L. HOM05D005967 ORTHO05D005174 1.6e-08 63.9 111 42.3
MBI05_g30241_MAGBIO Magnolia biondii HOM05D005967 ORTHO05D005174 1.6e-08 63.9 156 34.0
Oeu024352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.6e-08 63.9 151 35.1
CSS0050430 Camellia sinensis var. sinensis HOM05D005967 ORTHO05D005174 3.5e-08 62.8 128 40.6
RcHm_v2.0_Chr5g0064301 Rosa chinensis HOM05D005967 ORTHO05D005174 3.5e-08 62.8 104 44.2
Sabra09G0021100 Salix brachista HOM05D005967 ORTHO05D005174 3.5e-08 62.8 178 37.1
CARHR210990 Cardamine hirsuta HOM05D010528 ORTHO05D005174 5.9e-08 62.0 108 41.7
vmacro20146 Vaccinium macrocarpon HOM05D005967 ORTHO05D005174 7.7e-08 61.6 44 70.5
Aa31LG1G22380 Aethionema arabicum HOM05D010528 ORTHO05D005174 1.0e-07 61.2 117 38.5
Carub.0006s0121 Capsella rubella HOM05D010528 ORTHO05D005174 1.0e-07 61.2 78 50.0
MD11G1110400 Malus domestica HOM05D005967 ORTHO05D005174 1.0e-07 61.2 90 46.7
ClCG03G001590 Citrullus lanatus HOM05D005967 ORTHO05D005174 1.3e-07 60.8 71 52.1
Sabra16G0144100 Salix brachista HOM05D005967 ORTHO05D005174 1.3e-07 60.8 126 40.5
Sc01g0004310 Simmondsia chinensis HOM05D005967 ORTHO05D005174 1.3e-07 60.8 81 46.9
Oeu038352.1 Olea europaea HOM05D005967 ORTHO05D005174 1.7e-07 60.5 147 37.4
TWI79G0544 Tripterygium wilfordii HOM05D005967 ORTHO05D005174 1.7e-07 60.5 172 35.5
FAN16G3022 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.3e-07 60.1 128 41.4
FAN21G3710 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.3e-07 60.1 128 41.4
VMungo1383G3210 Vigna mungo HOM05D005967 ORTHO05D005174 2.3e-07 60.1 155 35.5
MSTRG.19086 Avicennia marina HOM05D005967 ORTHO05D005174 2.9e-07 59.7 63 55.6
DCAR_005974 Daucus carota HOM05D005967 ORTHO05D005174 2.9e-07 59.7 75 44.0
AL6G11650 Arabidopsis lyrata HOM05D010528 ORTHO05D005174 3.8e-07 59.3 79 48.1
FvH4_3g35950 Fragaria vesca HOM05D005967 ORTHO05D005174 3.8e-07 59.3 128 40.6
Oeu019207.1 Olea europaea HOM05D005967 ORTHO05D005174 3.8e-07 59.3 89 49.4
TPR.G23268 Trifolium pratense HOM05D005967 ORTHO05D005174 5.0e-07 58.9 82 42.7
COL.COLO4_18500 Corchorus olitorius HOM05D005967 ORTHO05D005174 6.6e-07 58.5 186 30.6
DCAR_020849 Daucus carota HOM05D005967 ORTHO05D005174 6.6e-07 58.5 138 41.3
Prupe.6G078900 Prunus persica HOM05D005967 ORTHO05D005174 6.6e-07 58.5 156 37.8
SGA_v2.0_scaffold126G33790 Striga asiatica HOM05D005967 ORTHO05D005174 6.6e-07 58.5 68 45.6
Actinidia23945 Actinidia chinensis HOM05D005967 ORTHO05D005174 8.6e-07 58.2 84 41.7
AT5G02420 Arabidopsis thaliana HOM05D010528 ORTHO05D005174 8.6e-07 58.2 79 46.8
Thhalv10015059m.g Eutrema salsugineum HOM05D010528 ORTHO05D005174 1.5e-06 57.4 78 48.7
FAN11G1916 Fragaria x ananassa HOM05D005967 ORTHO05D005174 1.9e-06 57.0 127 40.2
Gohir.A04G082200 Gossypium hirsutum HOM05D005967 ORTHO05D005174 1.9e-06 57.0 167 32.9
PGR004G0898 Punica granatum HOM05D005967 ORTHO05D005174 1.9e-06 57.0 190 32.1
FAN25G3118 Fragaria x ananassa HOM05D005967 ORTHO05D005174 2.5e-06 56.6 128 39.8
Atru.chr8.1967 Acer truncatum HOM05D005967 ORTHO05D005174 3.3e-06 56.2 85 42.4
Eucgr.B02374 Eucalyptus grandis HOM05D005967 ORTHO05D005174 3.3e-06 56.2 110 40.0
Glyma.15G038800 Glycine max HOM05D005967 ORTHO05D005174 3.3e-06 56.2 68 48.5
Phvul.L004943 Phaseolus vulgaris HOM05D005967 ORTHO05D005174 4.3e-06 55.8 88 38.6
A10p33240 Brassica napus HOM05D010528 ORTHO05D005174 5.6e-06 55.5 77 48.1
BraA10t45352Z Brassica rapa HOM05D010528 ORTHO05D005174 5.6e-06 55.5 77 48.1
Lj3g0001714 Lotus japonicus HOM05D005967 ORTHO05D005174 5.6e-06 55.5 77 42.9
Lj3g0014047 Lotus japonicus HOM05D005967 ORTHO05D005174 5.6e-06 55.5 151 35.1
Oeu054156.1 Olea europaea HOM05D005967 ORTHO05D005174 5.6e-06 55.5 89 43.8
C09p74150 Brassica napus HOM05D010528 ORTHO05D005174 7.3e-06 55.1 77 46.8
BolC9t60147H Brassica oleracea HOM05D010528 ORTHO05D005174 7.3e-06 55.1 77 46.8
Cpa.g.sc81.161 Carica papaya HOM05D005967 ORTHO05D005174 7.3e-06 55.1 77 50.6
MD12G1140600 Malus domestica HOM05D005967 ORTHO05D005174 7.3e-06 55.1 153 35.3
THA.LOC104827013 Tarenaya hassleriana HOM05D010528 ORTHO05D005174 7.3e-06 55.1 81 44.4
BcaNung05923 Brassica carinata HOM05D010528 ORTHO05D005174 9.5e-06 54.7 82 40.2


User provided reference genes

Program Settings