Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G083300 Populus trichocarpa HOM05D005679 ORTHO05D007228 1.6e-177 625.9 316 100.0
Sabra06G0062900 Salix brachista HOM05D005679 ORTHO05D007228 1.3e-158 563.1 308 91.2
Duzib093G1300 Durio zibethinus HOM05D005679 ORTHO05D007228 9.8e-122 440.7 311 71.7
CiPaw.09G012600 Carya illinoinensis HOM05D005679 ORTHO05D007228 3.7e-121 438.7 310 70.0
Atru.chr8.1566 Acer truncatum HOM05D005679 ORTHO05D007228 7.0e-120 434.5 302 71.5
COL.COLO4_29768 Corchorus olitorius HOM05D005679 ORTHO05D007228 1.6e-119 433.3 309 68.9
Thecc.05G087100 Theobroma cacao HOM05D005679 ORTHO05D007228 2.7e-119 432.6 309 69.6
Gorai.009G404000 Gossypium raimondii HOM05D005679 ORTHO05D007228 4.5e-119 431.8 311 69.5
Gohir.A04G063700 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.0e-118 430.6 311 69.5
Gohir.D04G100800 Gossypium hirsutum HOM05D005679 ORTHO05D007228 1.3e-118 430.3 311 69.1
Manes.09G056451 Manihot esculenta HOM05D005679 ORTHO05D007228 1.7e-118 429.9 312 69.6
GSVIVG01033827001 Vitis vinifera HOM05D005679 ORTHO05D007228 2.9e-118 429.1 314 68.5
Lalb_Chr21g0315771 Lupinus albus HOM05D005679 ORTHO05D007228 2.5e-117 426.0 311 68.5
arahy.Tifrunner.gnm1.ann1.J82H2E Arachis hypogaea HOM05D005679 ORTHO05D007228 2.1e-116 422.9 310 65.8
MD12G1023600 Malus domestica HOM05D005679 ORTHO05D007228 2.1e-116 422.9 307 68.1
Hma1.2p1_0536F.1_g174040 Hydrangea macrophylla HOM05D005679 ORTHO05D007228 6.1e-116 421.4 312 68.6
ClCG10G019090 Citrullus lanatus HOM05D005679 ORTHO05D007228 1.0e-115 420.6 313 68.4
arahy.Tifrunner.gnm1.ann1.5KE53F Arachis hypogaea HOM05D005679 ORTHO05D007228 1.4e-115 420.2 310 65.8
TAR633G0672 Trochodendron aralioides HOM05D005679 ORTHO05D007228 3.1e-115 419.1 311 68.2
Ciclev10012247m.g Citrus clementina HOM05D005679 ORTHO05D007228 5.2e-115 418.3 314 66.9
CANSAT80G1368 Cannabis sativa HOM05D005679 ORTHO05D007228 2.0e-114 416.4 310 66.1
Rhsim03G0076400 Rhododendron simsii HOM05D005679 ORTHO05D007228 9.8e-114 414.1 303 68.0
MELO3C009462.2 Cucumis melo HOM05D005679 ORTHO05D007228 4.9e-113 411.8 309 65.7
Actinidia05440 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.4e-112 410.2 312 67.6
vmacro07401 Vaccinium macrocarpon HOM05D005679 ORTHO05D007228 3.2e-112 409.1 331 61.6
CsaV3_3G037160 Cucumis sativus L. HOM05D005679 ORTHO05D007228 4.1e-112 408.7 311 65.0
MD14G1020800 Malus domestica HOM05D005679 ORTHO05D007228 1.3e-110 403.7 307 64.5
Lj5g0006681 Lotus japonicus HOM05D005679 ORTHO05D007228 1.1e-109 400.6 308 66.2
Glyma.13G153052 Glycine max HOM05D005679 ORTHO05D007228 3.3e-109 399.1 310 63.5
Psat6g080840 Pisum sativum HOM05D005679 ORTHO05D007228 5.6e-109 398.3 308 63.3
Dinv21221 Davidia involucrata HOM05D005679 ORTHO05D007228 3.6e-108 395.6 310 65.8
PGR004G0569 Punica granatum HOM05D005679 ORTHO05D007228 3.6e-108 395.6 307 63.5
VMungo0720G0655 Vigna mungo HOM05D005679 ORTHO05D007228 4.7e-108 395.2 310 62.3
Phvul.007G229100 Phaseolus vulgaris HOM05D005679 ORTHO05D007228 1.8e-107 393.3 310 62.9
Medtr1g060300 Medicago truncatula HOM05D005679 ORTHO05D007228 3.1e-107 392.5 308 61.0
TWI77G0106 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 5.2e-107 391.7 277 71.1
Eucgr.A01508 Eucalyptus grandis HOM05D005679 ORTHO05D007228 8.9e-107 391.0 310 63.5
Migut.J01051 Erythranthe guttata HOM05D005679 ORTHO05D007228 1.5e-106 390.2 318 61.0
Oeu047193.1 Olea europaea HOM05D005679 ORTHO05D007228 5.8e-106 388.3 316 63.3
FAN05G0675 Fragaria x ananassa HOM05D005679 ORTHO05D007228 7.5e-106 387.9 310 63.5
TPR.G31118 Trifolium pratense HOM05D005679 ORTHO05D007228 7.5e-106 387.9 308 61.4
Nn6g34939 Nelumbo nucifera HOM05D005679 ORTHO05D007228 1.3e-105 387.1 330 60.3
Solyc09g009630.3 Solanum lycopersicum HOM05D005679 ORTHO05D007228 6.4e-105 384.8 304 63.5
Sopen09g004390 Solanum pennellii HOM05D005679 ORTHO05D007228 6.4e-105 384.8 304 63.5
Peaxi162Scf00040g01117 Petunia axillaris HOM05D005679 ORTHO05D007228 1.1e-104 384.0 304 62.5
RcHm_v2.0_Chr3g0472981 Rosa chinensis HOM05D005679 ORTHO05D007228 1.9e-104 383.3 310 62.6
Carub.0004s1806 Capsella rubella HOM05D005679 ORTHO05D007228 1.6e-103 380.2 312 64.1
FAN14G3109 Fragaria x ananassa HOM05D005679 ORTHO05D007228 2.1e-103 379.8 310 63.2
PGSC0003DMG401002654 Solanum tuberosum HOM05D005679 ORTHO05D007228 2.7e-103 379.4 305 63.0
FvH4_6g18450 Fragaria vesca HOM05D005679 ORTHO05D007228 3.5e-103 379.0 310 62.9
Sp4g18530 Schrenkiella parvula HOM05D005679 ORTHO05D007228 1.3e-102 377.1 307 62.9
HanXRQChr10g0313901 Helianthus annuus HOM05D005679 ORTHO05D007228 3.0e-102 375.9 304 62.2
Aa31LG5G21440 Aethionema arabicum HOM05D005679 ORTHO05D007228 6.6e-102 374.8 306 62.1
THA.LOC104807091 Tarenaya hassleriana HOM05D005679 ORTHO05D007228 1.9e-101 373.2 304 62.5
Cc06_g05640 Coffea canephora HOM05D005679 ORTHO05D007228 2.5e-101 372.9 305 61.6
QL07p039311 Quercus lobata HOM05D005679 ORTHO05D007228 4.3e-101 372.1 267 70.8
AT2G36305 Arabidopsis thaliana HOM05D005679 ORTHO05D007228 5.6e-101 371.7 306 61.8
Thhalv10016950m.g Eutrema salsugineum HOM05D005679 ORTHO05D007228 9.5e-101 370.9 315 62.2
FAN02G2684 Fragaria x ananassa HOM05D005679 ORTHO05D007228 1.1e-99 367.5 319 59.6
MSTRG.5837 Avicennia marina HOM05D005679 ORTHO05D007228 1.8e-99 366.7 313 59.7
SHI23954 Sapria himalayana HOM05D005679 ORTHO05D007228 2.3e-99 366.3 312 60.3
AL4G32420 Arabidopsis lyrata HOM05D005679 ORTHO05D007228 3.1e-99 365.9 306 62.1
HanXRQChr13g0424691 Helianthus annuus HOM05D005679 ORTHO05D007228 6.8e-99 364.8 291 62.9
C03p23450 Brassica napus HOM05D005679 ORTHO05D007228 8.9e-99 364.4 308 61.7
Lsat_1_v5_gn_1_48041 Lactuca sativa HOM05D005679 ORTHO05D007228 8.9e-99 364.4 304 60.9
BolC3t14741H Brassica oleracea HOM05D005679 ORTHO05D007228 1.5e-98 363.6 308 62.0
BcaC01g05669 Brassica carinata HOM05D005679 ORTHO05D007228 2.6e-98 362.8 308 62.0
A03p20010 Brassica napus HOM05D005679 ORTHO05D007228 4.4e-98 362.1 310 61.0
BraA03t11252Z Brassica rapa HOM05D005679 ORTHO05D007228 4.4e-98 362.1 310 61.0
TWI53G0317 Tripterygium wilfordii HOM05D005679 ORTHO05D007228 4.4e-98 362.1 273 67.4
Aqoxy4G02804 Aquilegia oxysepala HOM05D005679 ORTHO05D007228 9.9e-98 360.9 304 59.2
Haze_19592 Corylus avellana HOM05D005679 ORTHO05D007228 2.2e-97 359.8 274 71.2
BcaB01g03852 Brassica carinata HOM05D005679 ORTHO05D007228 3.7e-97 359.0 311 60.8
PSO339G3946 Papaver somniferum HOM05D005679 ORTHO05D007228 4.9e-97 358.6 309 58.6
HanXRQChr11g0340241 Helianthus annuus HOM05D005679 ORTHO05D007228 1.6e-95 353.6 304 60.9
PSO384G2019 Papaver somniferum HOM05D005679 ORTHO05D007228 1.7e-94 350.1 310 57.4
SGA_v2.0_scaffold13G06736 Striga asiatica HOM05D005679 ORTHO05D007228 1.7e-94 350.1 294 59.2
Sc02g0000910 Simmondsia chinensis HOM05D005679 ORTHO05D007228 9.6e-93 344.4 297 61.3
Glyma.10G071200 Glycine max HOM05D005679 ORTHO05D007228 3.1e-91 339.3 310 55.5
EL10Ac7g16934 Beta vulgaris HOM05D005679 ORTHO05D007228 9.9e-90 334.3 306 58.2
FAN05G4213 Fragaria x ananassa HOM05D005679 ORTHO05D007228 9.9e-90 334.3 268 64.9
CSS0002811 Camellia sinensis var. sinensis HOM05D005679 ORTHO05D007228 4.9e-89 332.0 230 70.0
Nitab4.5_0001725g0030 Nicotiana tabacum HOM05D005679 ORTHO05D007228 2.1e-87 326.6 304 56.9
HPP92_006355 Vanilla planifolia HOM05D005679 ORTHO05D007228 3.3e-85 319.3 306 55.9
Ah.08g210640 Amaranthus hybridus HOM05D005679 ORTHO05D007228 2.8e-84 316.2 313 55.9
Nitab4.5_0002400g0100 Nicotiana tabacum HOM05D005679 ORTHO05D007228 1.4e-83 313.9 319 53.9
ECA248G1272 Erigeron canadensis HOM05D005679 ORTHO05D007228 1.2e-82 310.8 259 61.8
Sed0004661 Sechium edule HOM05D005679 ORTHO05D007228 1.3e-81 307.4 242 65.7
Prupe.7G112900 Prunus persica HOM05D005679 ORTHO05D007228 3.8e-81 305.8 223 66.4
ATR0568G150 Amborella trichopoda HOM05D005679 ORTHO05D007228 2.4e-80 303.1 258 62.8
TAR636G2700 Trochodendron aralioides HOM05D005679 ORTHO05D007228 7.8e-79 298.1 287 58.5
Ca_26654_v3 Cicer arietinum L. HOM05D005679 ORTHO05D007228 6.6e-78 295.0 241 61.0
CAN.G397.28 Capsicum annuum HOM05D005679 ORTHO05D007228 7.3e-77 291.6 221 64.7
HanXRQChr10g0313981 Helianthus annuus HOM05D005679 ORTHO05D007228 1.4e-75 287.3 255 56.9
unitig_749.g14296 Utricularia gibba HOM05D005679 ORTHO05D007228 5.1e-70 268.9 264 54.9
HanXRQChr10g0314031 Helianthus annuus HOM05D005679 ORTHO05D007228 9.6e-69 264.6 207 62.8
Mapoly0066s0044 Marchantia polymorpha HOM05D005679 ORTHO05D007228 8.4e-65 251.5 310 43.9
Lj9A526G37 Lonicera japonica HOM05D005679 ORTHO05D007228 6.9e-59 231.9 303 47.5
SMO203G0038 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 6.9e-59 231.9 327 39.4
HanXRQChr10g0314011 Helianthus annuus HOM05D005679 ORTHO05D007228 1.5e-58 230.7 187 63.1
Pp3c4_17190 Physcomitrium patens HOM05D005679 ORTHO05D007228 7.6e-58 228.4 311 42.4
Zm00001eb285910 Zea mays HOM05D005679 ORTHO05D007228 5.5e-56 222.2 306 43.1
AUR62028550 Chenopodium quinoa HOM05D005679 ORTHO05D007228 7.9e-55 218.4 151 68.9
SMO327G0022 Selaginella moellendorffii HOM05D005679 ORTHO05D007228 1.0e-54 218.0 306 40.8
Os05g0357700 Oryza sativa ssp. japonica HOM05D005679 ORTHO05D007228 6.7e-54 215.3 220 51.4
CARHR130580 Cardamine hirsuta HOM05D005679 ORTHO05D007228 4.8e-52 209.1 191 60.2
SEGI_36814 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 5.9e-50 202.2 229 48.0
Sed0012745 Sechium edule HOM05D005679 ORTHO05D007228 4.6e-47 192.6 210 49.5
AagrBONN_evm.TU.Sc2ySwM_228.1072 Anthoceros agrestis HOM05D005679 ORTHO05D007228 4.8e-44 182.6 172 52.3
AUR62033502 Chenopodium quinoa HOM05D005679 ORTHO05D007228 2.6e-42 176.8 152 59.9
Dinv31674 Davidia involucrata HOM05D005679 ORTHO05D007228 1.1e-40 171.4 255 43.1
Lj2A135T55 Lonicera japonica HOM05D005679 ORTHO05D007228 1.9e-40 170.6 162 55.6
HanXRQChr10g0313891 Helianthus annuus HOM05D005679 ORTHO05D007228 1.1e-35 154.8 161 55.3
SalBow3G2040 Salvia bowleyana HOM05D005679 ORTHO05D007228 3.1e-35 153.3 155 49.0
CBR_g961 Chara braunii HOM05D005679 ORTHO05D007228 3.5e-34 149.8 323 32.5
CDE02G3258 Ceratophyllum demersum HOM05D005679 ORTHO05D007228 1.5e-32 144.4 104 66.3
AUR62028549 Chenopodium quinoa HOM05D005679 ORTHO05D007228 8.0e-31 138.7 166 47.6
AUR62033501 Chenopodium quinoa HOM05D005679 ORTHO05D007228 1.4e-30 137.9 179 46.4
Lsat_1_v5_gn_1_48021 Lactuca sativa HOM05D005679 ORTHO05D007228 2.0e-26 124.0 87 69.0
Cre01.g042150 Chlamydomonas reinhardtii HOM05D005679 ORTHO05D007228 5.0e-25 119.4 147 45.6
Lj2A135G55 Lonicera japonica HOM05D005679 ORTHO05D007228 7.2e-24 115.5 72 72.2
MCO10G317 Micromonas commoda HOM05D005679 ORTHO05D007228 5.2e-22 109.4 145 43.4
Gorai.006G155900 Gossypium raimondii HOM05D005679 ORTHO05D007228 1.3e-20 104.8 74 64.9
Gohir.D09G135950 Gossypium hirsutum HOM05D005679 ORTHO05D007228 3.7e-20 103.2 74 63.5
Actinidia14313 Actinidia chinensis HOM05D005679 ORTHO05D007228 1.4e-19 101.3 195 37.9
SEGI_00479 Sequoiadendron giganteum HOM05D005679 ORTHO05D007228 6.1e-15 85.9 70 52.9
DCAR_009157 Daucus carota HOM05D005679 ORTHO05D007228 8.0e-15 85.5 115 42.6
HanXRQChr10g0313971 Helianthus annuus HOM05D005679 ORTHO05D007228 5.7e-13 79.3 106 48.1
PRCOL_00001551 Prasinoderma coloniale HOM05D005679 ORTHO05D007228 7.0e-11 72.4 106 42.5
arahy.Tifrunner.gnm1.ann1.7P1BGF Arachis hypogaea HOM05D005679 ORTHO05D003748 2.5e-08 63.9 37 83.8


User provided reference genes

Program Settings