Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G078700 Populus trichocarpa HOM05D005675 ORTHO05D006884 3.5e-200 701.4 362 100.0
Sabra06G0059600 Salix brachista HOM05D005675 ORTHO05D006884 3.4e-179 631.7 362 90.3
Manes.01G177400 Manihot esculenta HOM05D005675 ORTHO05D006884 6.8e-127 458.0 362 66.9
Cfa020754 Carpinus fangiana HOM05D005675 ORTHO05D006884 4.6e-115 418.7 356 62.6
QL11p008661 Quercus lobata HOM05D005675 ORTHO05D006884 5.6e-113 411.8 354 63.3
CiPaw.16G104100 Carya illinoinensis HOM05D005675 ORTHO05D006884 1.8e-111 406.8 362 60.8
Ciclev10008766m.g Citrus clementina HOM05D005675 ORTHO05D006884 4.6e-107 392.1 361 57.6
Prupe.4G276600 Prunus persica HOM05D005675 ORTHO05D006884 2.5e-105 386.3 359 59.1
TWI63G1173 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 2.5e-105 386.3 355 57.2
Hma1.2p1_0661F.1_g198030 Hydrangea macrophylla HOM05D005675 ORTHO05D006884 3.8e-101 372.5 363 58.4
Duzib168G1643 Durio zibethinus HOM05D005675 ORTHO05D006884 3.2e-100 369.4 350 57.7
Gohir.D08G027200 Gossypium hirsutum HOM05D005675 ORTHO05D006884 4.1e-100 369.0 351 57.5
MD07G1305000 Malus domestica HOM05D005675 ORTHO05D006884 4.1e-100 369.0 361 58.2
Dinv26452 Davidia involucrata HOM05D005675 ORTHO05D006884 5.4e-100 368.6 358 58.9
FAN09G4269 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.4e-100 368.6 353 57.2
COL.COLO4_23415 Corchorus olitorius HOM05D005675 ORTHO05D006884 7.1e-100 368.2 349 56.7
TAR626G0076 Trochodendron aralioides HOM05D005675 ORTHO05D006884 7.1e-100 368.2 360 56.7
Gorai.004G024100 Gossypium raimondii HOM05D005675 ORTHO05D006884 9.2e-100 367.9 351 57.8
RcHm_v2.0_Chr2g0128761 Rosa chinensis HOM05D005675 ORTHO05D006884 1.6e-99 367.1 353 57.2
CSS0039496 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 3.5e-99 365.9 358 56.1
GSVIVG01000235001 Vitis vinifera HOM05D005675 ORTHO05D006884 3.5e-99 365.9 360 53.6
TWI34G2031 Tripterygium wilfordii HOM05D005675 ORTHO05D006884 1.7e-98 363.6 362 55.0
Gohir.A08G016800 Gossypium hirsutum HOM05D005675 ORTHO05D006884 2.3e-98 363.2 351 57.0
FAN14G0585 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.0e-98 362.8 353 56.9
Actinidia02470 Actinidia chinensis HOM05D005675 ORTHO05D006884 1.1e-97 360.9 355 56.3
Cpa.g.sc115.21 Carica papaya HOM05D005675 ORTHO05D006884 2.5e-97 359.8 357 56.0
Lj1g0011117 Lotus japonicus HOM05D005675 ORTHO05D006884 2.1e-96 356.7 358 55.3
Ca_25634_v3 Cicer arietinum L. HOM05D005675 ORTHO05D001317 1.1e-95 354.4 348 57.2
Dinv25398 Davidia involucrata HOM05D005675 ORTHO05D006884 1.8e-95 353.6 358 57.8
PSO063G5127 Papaver somniferum HOM05D005675 ORTHO05D006884 6.9e-95 351.7 359 55.4
Medtr6g093070 Medicago truncatula HOM05D005675 ORTHO05D006884 1.2e-94 350.9 362 53.0
Thecc.09G196800 Theobroma cacao HOM05D005675 ORTHO05D006884 3.4e-94 349.4 334 56.3
FAN05G3686 Fragaria x ananassa HOM05D005675 ORTHO05D006884 5.8e-94 348.6 365 53.7
CANSAT80G1422 Cannabis sativa HOM05D005675 ORTHO05D006884 1.6e-91 340.5 362 51.7
PSO170G1351 Papaver somniferum HOM05D005675 ORTHO05D006884 2.3e-90 336.7 359 54.0
CAN.G1751.7 Capsicum annuum HOM05D005675 ORTHO05D006884 6.6e-90 335.1 360 53.1
vmacro20762 Vaccinium macrocarpon HOM05D005675 ORTHO05D006884 4.3e-89 332.4 404 50.0
TPR.G21343 Trifolium pratense HOM05D005675 ORTHO05D006884 7.3e-89 331.6 365 51.5
Solyc12g017470.2 Solanum lycopersicum HOM05D005675 ORTHO05D006884 1.3e-88 330.9 352 52.8
Sopen07g006010 Solanum pennellii HOM05D005675 ORTHO05D006884 2.4e-87 326.6 352 54.0
Cc00_g00090 Coffea canephora HOM05D005675 ORTHO05D006884 5.3e-87 325.5 356 51.7
Solyc07g017290.4 Solanum lycopersicum HOM05D005675 ORTHO05D006884 9.0e-87 324.7 352 53.1
DCAR_009047 Daucus carota HOM05D005675 ORTHO05D006884 2.6e-86 323.2 357 51.0
VMungo0464G1932 Vigna mungo HOM05D005675 ORTHO05D001317 1.4e-84 317.4 361 48.2
PGR044G2364 Punica granatum HOM05D005675 ORTHO05D006884 2.4e-84 316.6 347 50.1
Nitab4.5_0014696g0010 Nicotiana tabacum HOM05D005675 ORTHO05D006884 3.2e-84 316.2 359 50.4
Phvul.004G178000 Phaseolus vulgaris HOM05D005675 ORTHO05D006884 4.2e-84 315.8 362 48.6
Eucgr.C02170 Eucalyptus grandis HOM05D005675 ORTHO05D006884 9.3e-84 314.7 350 50.3
Glyma.01G001700 Glycine max HOM05D005675 ORTHO05D006884 1.6e-83 313.9 366 50.8
Atru.chr2.1389 Acer truncatum HOM05D005675 ORTHO05D006884 2.1e-83 313.5 358 53.1
arahy.Tifrunner.gnm1.ann1.RL68NL Arachis hypogaea HOM05D005675 ORTHO05D006884 7.9e-83 311.6 369 50.4
MSTRG.26518 Avicennia marina HOM05D005675 ORTHO05D006884 7.9e-83 311.6 363 49.9
Lalb_Chr14g0362531 Lupinus albus HOM05D005675 ORTHO05D006884 1.3e-82 310.8 364 49.7
Haze_19098 Corylus avellana HOM05D005675 ORTHO05D006884 3.7e-80 302.8 387 46.8
THA.LOC104815311 Tarenaya hassleriana HOM05D005675 ORTHO05D006884 1.8e-79 300.4 350 48.6
Sed0020807 Sechium edule HOM05D005675 ORTHO05D006884 2.4e-79 300.1 354 48.9
Prupe.3G126100 Prunus persica HOM05D005675 ORTHO05D006884 5.3e-79 298.9 365 50.7
Rhsim01G0109900 Rhododendron simsii HOM05D005675 ORTHO05D006884 1.2e-78 297.7 321 53.3
ECA240G2624 Erigeron canadensis HOM05D005675 ORTHO05D006884 1.3e-77 294.3 355 48.5
ClCG05G011260 Citrullus lanatus HOM05D005675 ORTHO05D006884 6.4e-77 292.0 355 48.7
Migut.L01917 Erythranthe guttata HOM05D005675 ORTHO05D006884 7.1e-76 288.5 353 45.3
Aa31LG3G3440 Aethionema arabicum HOM05D005675 ORTHO05D006884 3.5e-75 286.2 351 45.9
MBI13_g31573_MAGBIO Magnolia biondii HOM05D005675 ORTHO05D006884 5.1e-74 282.3 391 43.5
BolC5t34404H Brassica oleracea HOM05D005675 ORTHO05D006884 8.7e-74 281.6 351 47.0
C05p57470 Brassica napus HOM05D005675 ORTHO05D006884 1.5e-73 280.8 351 46.4
SalBow5G0607 Salvia bowleyana HOM05D005675 ORTHO05D006884 1.5e-73 280.8 376 46.0
CsaV3_3G021160 Cucumis sativus L. HOM05D005675 ORTHO05D006884 4.8e-72 275.8 350 46.3
AL3G45830 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 6.2e-72 275.4 351 46.4
Lsat_1_v5_gn_7_57460 Lactuca sativa HOM05D005675 ORTHO05D006884 8.2e-72 275.0 345 46.7
BraA03t12828Z Brassica rapa HOM05D005675 ORTHO05D006884 1.1e-71 274.6 352 46.6
BraA05t22649Z Brassica rapa HOM05D005675 ORTHO05D006884 1.4e-71 274.2 351 46.2
BcaC01g04171 Brassica carinata HOM05D005675 ORTHO05D006884 2.4e-71 273.5 352 46.3
A03p36640 Brassica napus HOM05D005675 ORTHO05D006884 4.0e-71 272.7 353 46.7
BcaC05g29447 Brassica carinata HOM05D005675 ORTHO05D006884 6.9e-71 271.9 357 45.4
Carub.0003s0981 Capsella rubella HOM05D005675 ORTHO05D006884 1.5e-70 270.8 351 45.6
AT3G10572 Arabidopsis thaliana HOM05D005675 ORTHO05D006884 2.0e-70 270.4 354 45.5
A05p38580 Brassica napus HOM05D005675 ORTHO05D006884 4.5e-70 269.2 354 45.2
PGSC0003DMG400006457 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.5e-70 269.2 307 50.2
Thhalv10021093m.g Eutrema salsugineum HOM05D005675 ORTHO05D006884 4.9e-69 265.8 352 45.7
HanXRQChr03g0067281 Helianthus annuus HOM05D005675 ORTHO05D006884 8.4e-69 265.0 353 44.2
Oeu036952.2 Olea europaea HOM05D005675 ORTHO05D006884 1.1e-68 264.6 461 39.5
CAN.G1751.9 Capsicum annuum HOM05D005675 ORTHO05D006884 1.4e-68 264.2 315 48.3
AL3G22010 Arabidopsis lyrata HOM05D005675 ORTHO05D006884 1.9e-68 263.8 351 45.3
Sp3g08870 Schrenkiella parvula HOM05D005675 ORTHO05D006884 1.9e-68 263.8 345 44.9
SGA_v2.0_scaffold21G09606 Striga asiatica HOM05D005675 ORTHO05D006884 4.2e-68 262.7 367 44.7
BolC3t16698H Brassica oleracea HOM05D005675 ORTHO05D006884 1.2e-67 261.2 352 44.9
CAN.G309.91 Capsicum annuum HOM05D005675 ORTHO05D006884 2.1e-67 260.4 286 51.4
SGA_v2.0_scaffold339G49254 Striga asiatica HOM05D005675 ORTHO05D006884 4.6e-67 259.2 360 43.6
FvH4_6g26940 Fragaria vesca HOM05D005675 ORTHO05D006884 1.8e-66 257.3 264 52.7
FAN02G0472 Fragaria x ananassa HOM05D005675 ORTHO05D006884 3.0e-66 256.5 288 51.0
MELO3C020255.2 Cucumis melo HOM05D005675 ORTHO05D006884 3.3e-65 253.1 337 45.1
ATR0626G294 Amborella trichopoda HOM05D005675 ORTHO05D006884 2.0e-62 243.8 365 41.1
SHI13641 Sapria himalayana HOM05D005675 ORTHO05D006884 1.7e-61 240.7 373 42.6
CSS0020115 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 1.9e-60 237.3 208 61.5
CAN.G486.3 Capsicum annuum HOM05D002496 ORTHO05D002787 2.7e-59 233.4 300 47.3
Ah.06g185690 Amaranthus hybridus HOM05D005675 ORTHO05D006884 1.5e-57 227.6 354 41.8
AUR62002223 Chenopodium quinoa HOM05D005675 ORTHO05D006884 2.8e-56 223.4 358 41.1
HPP92_010804 Vanilla planifolia HOM05D005675 ORTHO05D006884 3.7e-56 223.0 370 38.1
TAR383G0085 Trochodendron aralioides HOM05D005675 ORTHO05D006884 6.3e-56 222.2 284 46.5
Sc26g0001420 Simmondsia chinensis HOM05D005675 ORTHO05D006884 1.4e-55 221.1 321 43.3
Aqoxy6G03025 Aquilegia oxysepala HOM05D005675 ORTHO05D006884 1.5e-54 217.6 310 41.9
Os06g0702800 Oryza sativa ssp. japonica HOM05D005675 ORTHO05D006884 2.0e-54 217.2 368 36.1
Sopen12g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 7.7e-54 215.3 205 58.0
Glyma.07G130600 Glycine max HOM05D005675 ORTHO05D006884 2.9e-53 213.4 278 46.4
AUR62015436 Chenopodium quinoa HOM05D005675 ORTHO05D006884 1.4e-52 211.1 350 40.3
Hund11839 Selenicereus undatus HOM05D005675 ORTHO05D006884 1.9e-52 210.7 359 40.4
Zm00001eb227160 Zea mays HOM05D005675 ORTHO05D006884 1.5e-49 201.1 318 39.6
C03p44280 Brassica napus HOM05D005675 ORTHO05D006884 2.0e-49 200.7 352 38.4
Nn8g41130 Nelumbo nucifera HOM05D005675 ORTHO05D006884 5.7e-49 199.1 193 54.9
CDE05G2328 Ceratophyllum demersum HOM05D005675 ORTHO05D006884 2.2e-45 187.2 355 34.6
Nitab4.5_0000899g0040 Nicotiana tabacum HOM05D005675 ORTHO05D006884 2.9e-45 186.8 195 50.3
Lju432C7G1 Lonicera japonica HOM05D005675 ORTHO05D006884 3.2e-44 183.3 359 35.7
EL10Ac3g05860 Beta vulgaris HOM05D005675 ORTHO05D006884 1.2e-43 181.4 320 40.0
CARHR085110 Cardamine hirsuta HOM05D005675 ORTHO05D006884 1.8e-42 177.6 254 43.3
PSO170G0789 Papaver somniferum HOM05D005675 ORTHO05D006884 6.7e-42 175.6 266 43.6
PSO170G4889 Papaver somniferum HOM05D005675 ORTHO05D006884 6.7e-42 175.6 266 43.6
PSO170G5374 Papaver somniferum HOM05D005675 ORTHO05D006884 6.7e-42 175.6 266 43.6
Haze_19095 Corylus avellana HOM05D005675 ORTHO05D006884 1.2e-38 164.9 127 66.1
PSO431G0001 Papaver somniferum HOM05D005675 ORTHO05D006884 1.2e-38 164.9 227 45.8
PSO170G3345 Papaver somniferum HOM05D005675 ORTHO05D006884 1.0e-37 161.8 251 42.6
Peaxi162Scf01527g00006 Petunia axillaris HOM05D005675 ORTHO05D006884 1.5e-36 157.9 213 43.2
unitig_578.g16399 Utricularia gibba HOM05D005675 ORTHO05D006884 8.8e-34 148.7 208 47.1
PGSC0003DMG400009563 Solanum tuberosum HOM05D005675 ORTHO05D006884 4.8e-32 142.9 160 51.2
SEGI_03452 Sequoiadendron giganteum HOM05D005675 ORTHO05D006884 2.0e-30 137.5 293 32.4
CAN.G2070.2 Capsicum annuum HOM05D005675 ORTHO05D006884 7.2e-28 129.0 168 48.8
Mapoly0082s0059 Marchantia polymorpha HOM05D005675 ORTHO05D006884 3.4e-25 120.2 412 25.2
CAN.G1703.6 Capsicum annuum HOM05D002496 ORTHO05D002787 9.1e-23 112.1 159 40.9
Pp3c9_5270 Physcomitrium patens HOM05D005675 ORTHO05D006884 2.7e-22 110.5 397 24.9
unitig_578.g16398 Utricularia gibba HOM05D005675 ORTHO05D006884 1.0e-21 108.6 101 51.5
CARHR085100 Cardamine hirsuta HOM05D005675 ORTHO05D006884 4.7e-19 99.8 97 57.7
Sopen12g008240 Solanum pennellii HOM05D005675 ORTHO05D006884 8.9e-18 95.5 93 55.9
Gohir.D08G027550 Gossypium hirsutum HOM05D005675 ORTHO05D006884 7.8e-14 82.4 66 60.6
SMO367G0141 Selaginella moellendorffii HOM05D005675 ORTHO05D006884 2.3e-13 80.9 200 31.5
Gorai.004G024600 Gossypium raimondii HOM05D005675 ORTHO05D006884 2.9e-13 80.5 66 59.1
AagrBONN_evm.TU.Sc2ySwM_228.2452 Anthoceros agrestis HOM05D034800 ORTHO05D006884 6.1e-11 72.8 183 24.6
Sopen00g008260 Solanum pennellii HOM05D005675 ORTHO05D006884 6.1e-11 72.8 50 70.0
AagrBONN_evm.TU.Sc2ySwM_344.4450 Anthoceros agrestis HOM05D034800 ORTHO05D006884 9.8e-09 65.5 382 22.0
Sabra18G0129100 Salix brachista HOM05D000311 ORTHO05D000183 1.3e-08 65.1 44 72.7
Sabra18G0125400 Salix brachista HOM05D000311 ORTHO05D000183 1.7e-08 64.7 43 74.4
CSS0044900 Camellia sinensis var. sinensis HOM05D005675 ORTHO05D006884 8.3e-08 62.4 73 49.3
Ah.13g066730 Amaranthus hybridus HOM05D014553 ORTHO05D018255 4.1e-07 60.1 42 66.7


User provided reference genes

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