Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 1.4e-34 149.1 75 100.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.9e-32 141.4 75 94.7
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 3.2e-31 137.9 75 92.0
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 7.4e-28 126.7 73 82.2
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.6e-25 118.2 73 79.5
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.5e-25 117.9 73 75.3
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 76.7
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 1.7e-24 115.5 73 76.7
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 3.8e-24 114.4 73 75.3
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 6.5e-24 113.6 74 81.1
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.5e-23 111.7 73 74.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 3.2e-23 111.3 73 71.2
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 4.2e-23 110.9 73 75.3
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 4.2e-23 110.9 73 75.3
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 5.5e-23 110.5 73 72.6
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 5.5e-23 110.5 73 74.0
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.5e-23 110.5 73 74.0
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 9.4e-23 109.8 73 72.6
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.2e-22 109.4 74 78.4
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.6e-22 109.0 73 72.6
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.1e-22 108.6 73 74.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 72.6
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 3.6e-22 107.8 73 69.9
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 6.1e-22 107.1 73 71.2
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 8.0e-22 106.7 73 74.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 8.0e-22 106.7 73 69.9
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.4e-21 105.9 73 72.6
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.4e-21 105.9 73 71.2
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 1.4e-21 105.9 73 68.5
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.8e-21 105.5 73 72.6
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.8e-21 105.5 73 69.9
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 5.2e-21 104.0 74 73.0
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.8e-21 103.2 73 69.9
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 8.8e-21 103.2 73 69.9
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 1.1e-20 102.8 73 67.1
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.6e-20 101.7 73 71.2
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.6e-20 101.7 73 65.8
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 3.3e-20 101.3 73 69.9
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 3.3e-20 101.3 73 69.9
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 4.4e-20 100.9 73 69.9
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 7.4e-20 100.1 73 69.9
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 9.7e-20 99.8 73 68.5
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 9.7e-20 99.8 73 68.5
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-19 99.0 73 65.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 2.2e-19 98.6 73 64.4
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.8e-19 98.2 73 65.8
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 4.8e-19 97.4 73 63.0
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 8.2e-19 96.7 71 66.2
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 64.4
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.1e-18 96.3 73 67.1
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 1.4e-18 95.9 77 68.8
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 3.1e-18 94.7 73 61.6
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 3.1e-18 94.7 73 65.8
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.1e-18 94.4 61 70.5
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 5.3e-18 94.0 73 67.1
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 9.1e-18 93.2 74 66.2
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 9.1e-18 93.2 77 66.2
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.2e-17 92.8 73 60.3
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.2e-17 92.8 80 60.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 1.2e-17 92.8 77 63.6
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 2.0e-17 92.0 76 64.5
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 2.0e-17 92.0 77 64.9
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 2.6e-17 91.7 73 61.6
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.5e-17 91.3 73 63.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 4.5e-17 90.9 74 58.1
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 4.5e-17 90.9 73 64.4
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 4.5e-17 90.9 65 70.8
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 4.5e-17 90.9 73 61.6
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 5.9e-17 90.5 74 60.8
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 7.7e-17 90.1 75 61.3
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 1.0e-16 89.7 73 58.9
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.3e-16 89.4 69 58.0
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.3e-16 89.4 73 60.3
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 1.7e-16 89.0 78 56.4
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 77 59.7
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 77 59.7
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 76 56.6
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 77 58.4
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 77 58.4
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.0e-16 87.4 77 59.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 6.5e-16 87.0 58 69.0
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 8.5e-16 86.7 77 57.1
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 8.5e-16 86.7 77 57.1
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-15 85.9 80 56.2
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.5e-15 85.9 63 68.3
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 2.5e-15 85.1 64 64.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.5e-15 85.1 77 55.8
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 2.5e-15 85.1 77 55.8
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.5e-15 85.1 77 57.1
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 5.5e-15 84.0 77 55.8
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 9.4e-15 83.2 64 62.5
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 9.4e-15 83.2 64 62.5
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 9.4e-15 83.2 64 62.5
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 9.4e-15 83.2 64 62.5
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 9.4e-15 83.2 64 62.5
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 9.4e-15 83.2 76 56.6
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 1.6e-14 82.4 64 60.9
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.1e-14 82.0 63 63.5
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 2.1e-14 82.0 57 68.4
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.1e-14 82.0 70 58.6
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 3.6e-14 81.3 64 60.9
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.6e-14 81.3 57 63.2
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 3.6e-14 81.3 68 60.3
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 3.6e-14 81.3 63 63.5
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 3.6e-14 81.3 58 69.0
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 4.7e-14 80.9 72 56.9
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 4.7e-14 80.9 78 52.6
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 4.7e-14 80.9 76 55.3
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 6.1e-14 80.5 68 60.3
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 6.1e-14 80.5 68 60.3
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 6.1e-14 80.5 67 56.7
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 6.1e-14 80.5 73 57.5
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 8.0e-14 80.1 63 61.9
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 8.0e-14 80.1 73 53.4
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 8.0e-14 80.1 77 57.1
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 8.0e-14 80.1 65 66.2
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 1.4e-13 79.3 72 56.9
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.8e-13 79.0 76 52.6
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.3e-13 78.6 79 51.9
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.3e-13 78.6 77 49.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.0e-13 78.2 73 52.1
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 3.0e-13 78.2 74 56.8
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 6.8e-13 77.0 68 58.8
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 6.8e-13 77.0 52 63.5
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.2e-12 76.3 75 53.3
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.2e-12 76.3 52 61.5
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-12 75.9 75 52.0
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-12 75.9 75 52.0
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-12 75.9 75 52.0
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-12 75.9 75 52.0
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.5e-12 75.9 75 52.0
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.0e-12 75.5 73 53.4
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 3.4e-12 74.7 71 50.7
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 3.4e-12 74.7 59 59.3
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 3.4e-12 74.7 78 52.6
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 4.4e-12 74.3 73 52.1
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 1.3e-11 72.8 78 48.7
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.3e-11 72.8 75 49.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 2.2e-11 72.0 82 48.8
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-11 72.0 57 59.6
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 2.8e-11 71.6 72 51.4
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 3.7e-11 71.2 58 67.2
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 4.8e-11 70.9 73 50.7
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 8.3e-11 70.1 56 66.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 8.3e-11 70.1 44 65.9
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.8e-10 68.9 54 61.1
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.1e-10 68.2 67 46.3
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 4.1e-10 67.8 58 53.4
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 9.1e-10 66.6 52 48.1
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 1.6e-09 65.9 61 47.5
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.0e-08 63.2 36 77.8
MBI16_g37211_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 8.0e-06 53.5 42 61.9


User provided reference genes

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