Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G075900 Populus trichocarpa HOM05D005029 ORTHO05D006052 1.6e-158 562.8 298 100.0
Sabra06G0056600 Salix brachista HOM05D005029 ORTHO05D006052 3.4e-132 475.3 320 80.0
Potri.018G143000 Populus trichocarpa HOM05D005029 ORTHO05D006052 2.4e-117 426.0 298 77.9
Sabra18G0116800 Salix brachista HOM05D005029 ORTHO05D006052 9.6e-111 404.1 299 74.6
Manes.06G020200 Manihot esculenta HOM05D005029 ORTHO05D006052 3.3e-103 379.0 304 70.7
Dinv41171 Davidia involucrata HOM05D005029 ORTHO05D006052 4.3e-95 352.1 302 66.9
Gohir.A13G208700 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-94 350.5 301 66.1
Gohir.D13G213100 Gossypium hirsutum HOM05D005029 ORTHO05D006052 1.3e-94 350.5 302 65.9
Gorai.013G243400 Gossypium raimondii HOM05D005029 ORTHO05D006052 1.3e-94 350.5 302 65.9
Duzib170G0048 Durio zibethinus HOM05D005029 ORTHO05D006052 2.4e-93 346.3 301 63.5
Cpa.g.c27842.2 Carica papaya HOM05D005029 ORTHO05D006052 6.9e-93 344.7 304 65.8
Cfa013448 Carpinus fangiana HOM05D005029 ORTHO05D006052 7.6e-92 341.3 304 65.5
Haze_22015 Corylus avellana HOM05D005029 ORTHO05D006052 1.0e-91 340.9 304 65.8
COL.COLO4_08419 Corchorus olitorius HOM05D005029 ORTHO05D006052 1.7e-91 340.1 286 66.4
CiPaw.08G032800 Carya illinoinensis HOM05D005029 ORTHO05D006052 1.1e-90 337.4 312 61.2
Duzib150G1033 Durio zibethinus HOM05D005029 ORTHO05D006052 4.2e-90 335.5 300 63.7
TWI32G0396 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 3.0e-88 329.3 304 67.8
CiPaw.07G196600 Carya illinoinensis HOM05D005029 ORTHO05D006052 8.7e-88 327.8 318 60.1
TWI34G0612 Tripterygium wilfordii HOM05D005029 ORTHO05D006052 8.7e-88 327.8 302 66.9
Thecc.09G185600 Theobroma cacao HOM05D005029 ORTHO05D006052 5.7e-87 325.1 302 61.6
MD16G1249500 Malus domestica HOM05D005029 ORTHO05D006052 1.8e-85 320.1 301 64.1
Glyma.09G059300 Glycine max HOM05D005029 ORTHO05D006052 5.3e-85 318.5 297 61.6
CANSAT11G1104 Cannabis sativa HOM05D005029 ORTHO05D006052 1.3e-83 313.9 304 63.5
Prupe.1G076300 Prunus persica HOM05D005029 ORTHO05D006052 1.3e-83 313.9 303 63.4
VMungo1309G1415 Vigna mungo HOM05D005029 ORTHO05D006052 1.9e-82 310.1 300 61.3
TAR626G1810 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.5e-82 309.7 300 61.7
Glyma.15G165600 Glycine max HOM05D005029 ORTHO05D006052 1.6e-81 307.0 282 61.7
Phvul.009G236500 Phaseolus vulgaris HOM05D005029 ORTHO05D006052 1.6e-81 307.0 285 61.1
TAR383G0036 Trochodendron aralioides HOM05D005029 ORTHO05D006052 2.7e-81 306.2 302 62.9
Lalb_Chr11g0074801 Lupinus albus HOM05D005029 ORTHO05D006052 1.3e-80 303.9 292 60.3
Medtr2g037940 Medicago truncatula HOM05D005029 ORTHO05D006052 1.3e-80 303.9 300 58.0
QL02p046501 Quercus lobata HOM05D005029 ORTHO05D006052 1.5e-79 300.4 406 50.2
Peaxi162Scf01600g00016 Petunia axillaris HOM05D005029 ORTHO05D006052 9.7e-79 297.7 302 61.6
GSVIVG01010867001 Vitis vinifera HOM05D005029 ORTHO05D006052 1.3e-78 297.4 291 61.5
Solyc07g008780.3 Solanum lycopersicum HOM05D005029 ORTHO05D006052 1.6e-78 297.0 307 62.5
Nitab4.5_0000617g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 2.2e-78 296.6 308 59.1
Carub.0007s1068 Capsella rubella HOM05D005029 ORTHO05D006052 2.8e-78 296.2 304 61.5
THA.LOC104803957 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.8e-78 296.2 301 62.5
THA.LOC104803983 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 2.8e-78 296.2 301 62.5
Nn7g36649 Nelumbo nucifera HOM05D005029 ORTHO05D006052 8.2e-78 294.7 301 57.8
RcHm_v2.0_Chr4g0399711 Rosa chinensis HOM05D005029 ORTHO05D006052 1.4e-77 293.9 302 58.9
Actinidia01279 Actinidia chinensis HOM05D005029 ORTHO05D006052 1.8e-77 293.5 313 61.3
Lj6g0016757 Lotus japonicus HOM05D005029 ORTHO05D006052 2.4e-77 293.1 288 61.1
AUR62021347 Chenopodium quinoa HOM05D005029 ORTHO05D006052 3.1e-77 292.7 300 59.3
Sopen07g004720 Solanum pennellii HOM05D005029 ORTHO05D006052 6.9e-77 291.6 307 61.2
arahy.Tifrunner.gnm1.ann1.K38ATV Arachis hypogaea HOM05D005029 ORTHO05D006052 9.0e-77 291.2 283 63.3
PGSC0003DMG400028729 Solanum tuberosum HOM05D005029 ORTHO05D006052 1.2e-76 290.8 307 60.9
Eucgr.C00120 Eucalyptus grandis HOM05D005029 ORTHO05D006052 2.0e-76 290.0 287 57.1
THA.LOC104814654 Tarenaya hassleriana HOM05D005029 ORTHO05D006052 4.5e-76 288.9 303 62.4
Cc00_g10760 Coffea canephora HOM05D005029 ORTHO05D006052 7.7e-76 288.1 269 65.1
Sp7g27770 Schrenkiella parvula HOM05D005029 ORTHO05D006052 2.2e-75 286.6 304 60.5
Ca_02102_v3 Cicer arietinum L. HOM05D005029 ORTHO05D006052 2.9e-75 286.2 301 56.8
AUR62033261 Chenopodium quinoa HOM05D005029 ORTHO05D006052 6.5e-75 285.0 300 57.7
EL10Ac8g18332 Beta vulgaris HOM05D005029 ORTHO05D006052 8.5e-75 284.6 300 57.0
FvH4_4g07340 Fragaria vesca HOM05D005029 ORTHO05D006052 8.5e-75 284.6 289 59.5
Nitab4.5_0008862g0020 Nicotiana tabacum HOM05D005029 ORTHO05D006052 8.5e-75 284.6 306 58.2
Psat1g145480 Pisum sativum HOM05D005029 ORTHO05D006052 2.5e-74 283.1 262 61.1
CARHR237880 Cardamine hirsuta HOM05D005029 ORTHO05D006052 4.2e-74 282.3 303 61.4
FAN12G1304 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.5e-74 282.0 287 59.9
Thhalv10025919m.g Eutrema salsugineum HOM05D005029 ORTHO05D006052 7.2e-74 281.6 303 61.4
AL7G22280 Arabidopsis lyrata HOM05D005029 ORTHO05D006052 2.1e-73 280.0 305 58.7
Ciclev10009010m.g Citrus clementina HOM05D005029 ORTHO05D006052 2.1e-73 280.0 280 62.5
FAN07G2409 Fragaria x ananassa HOM05D005029 ORTHO05D006052 4.6e-73 278.9 269 57.6
Aa31LG2G20590 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.4e-72 277.3 311 57.6
Atru.chr7.763 Acer truncatum HOM05D005029 ORTHO05D006052 3.9e-72 275.8 302 58.3
Atru.chr7.783 Acer truncatum HOM05D005029 ORTHO05D006052 3.9e-72 275.8 302 58.3
AT4G29960 Arabidopsis thaliana HOM05D005029 ORTHO05D006052 5.1e-72 275.4 303 56.4
FAN22G0020 Fragaria x ananassa HOM05D005029 ORTHO05D006052 1.1e-71 274.2 288 58.3
MBI13_g01742_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.1e-71 274.2 287 57.1
DCAR_030818 Daucus carota HOM05D005029 ORTHO05D006052 5.7e-71 271.9 274 62.0
FAN17G0071 Fragaria x ananassa HOM05D005029 ORTHO05D006052 5.7e-71 271.9 312 56.4
MBI19_g21652_MAGBIO Magnolia biondii HOM05D005029 ORTHO05D006052 1.3e-70 270.8 300 54.7
Dinv25437 Davidia involucrata HOM05D005029 ORTHO05D006052 1.7e-70 270.4 284 58.1
BolC3t21207H Brassica oleracea HOM05D005029 ORTHO05D006052 2.8e-70 269.6 303 58.7
TPR.G7936 Trifolium pratense HOM05D005029 ORTHO05D006052 2.8e-70 269.6 297 57.9
Sc16g0010440 Simmondsia chinensis HOM05D005029 ORTHO05D006052 4.8e-70 268.9 297 56.9
Nn2g14879 Nelumbo nucifera HOM05D005029 ORTHO05D006052 8.2e-70 268.1 294 57.1
Sed0026503 Sechium edule HOM05D005029 ORTHO05D006052 8.2e-70 268.1 305 56.1
MSTRG.26542 Avicennia marina HOM05D005029 ORTHO05D006052 2.4e-69 266.5 299 53.5
Hund26310 Selenicereus undatus HOM05D005029 ORTHO05D006052 2.6e-68 263.1 290 56.9
Ah.09g230060 Amaranthus hybridus HOM05D005029 ORTHO05D006052 4.5e-68 262.3 307 54.7
Aqoxy7G02787 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 7.7e-68 261.5 281 57.7
BcaC01g01206 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-67 261.2 288 59.7
Oeu034799.1 Olea europaea HOM05D005029 ORTHO05D006052 3.8e-67 259.2 251 59.8
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 1.4e-66 257.3 308 54.5
Ah.14g083530 Amaranthus hybridus HOM05D005029 ORTHO05D006052 2.5e-66 256.5 298 54.4
HanXRQChr13g0426591 Helianthus annuus HOM05D005029 ORTHO05D006052 5.5e-66 255.4 308 52.9
SHI09006 Sapria himalayana HOM05D005029 ORTHO05D006052 1.6e-65 253.8 273 54.9
Lsat_1_v5_gn_3_137280 Lactuca sativa HOM05D005029 ORTHO05D006052 2.1e-65 253.4 278 55.0
PSO170G2568 Papaver somniferum HOM05D005029 ORTHO05D006052 2.1e-65 253.4 311 53.1
CsaV3_1G031840 Cucumis sativus L. HOM05D005029 ORTHO05D006052 7.9e-65 251.5 260 56.5
MELO3C017433.2 Cucumis melo HOM05D005029 ORTHO05D006052 1.4e-64 250.8 307 52.8
BraA08t33909Z Brassica rapa HOM05D005029 ORTHO05D006052 1.3e-62 244.2 302 56.3
Migut.L01885 Erythranthe guttata HOM05D005029 ORTHO05D006052 4.1e-61 239.2 292 57.9
A08p19470 Brassica napus HOM05D005029 ORTHO05D006052 1.2e-60 237.7 303 56.1
Lalb_Chr13g0300031 Lupinus albus HOM05D005029 ORTHO05D006052 4.5e-60 235.7 290 52.8
SGA_v2.0_scaffold31G12759 Striga asiatica HOM05D005029 ORTHO05D006052 5.9e-60 235.3 306 53.6
arahy.Tifrunner.gnm1.ann1.J7B49U Arachis hypogaea HOM05D005029 ORTHO05D006052 3.8e-59 232.6 196 70.4
CSS0012939 Camellia sinensis var. sinensis HOM05D005029 ORTHO05D006052 6.5e-59 231.9 311 54.3
PGR142G1735 Punica granatum HOM05D005029 ORTHO05D006052 8.5e-59 231.5 268 59.3
ATR0626G110 Amborella trichopoda HOM05D005029 ORTHO05D006052 2.7e-57 226.5 314 49.7
ClCG06G013560 Citrullus lanatus HOM05D005029 ORTHO05D006052 6.1e-57 225.3 275 51.6
BcaC09g51777 Brassica carinata HOM05D000106 ORTHO05D000160 7.5e-55 218.4 301 53.5
C03p88970 Brassica napus HOM05D005029 ORTHO05D006052 7.5e-55 218.4 255 56.9
BcaC07g37961 Brassica carinata HOM05D005029 ORTHO05D006052 9.7e-55 218.0 302 50.7
BcaNung00506 Brassica carinata HOM05D005029 ORTHO05D006052 9.7e-55 218.0 303 52.1
CDE04G3679 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 3.7e-54 216.1 280 49.3
BraA01t00761Z Brassica rapa HOM05D005029 ORTHO05D006052 6.3e-54 215.3 309 52.8
ECA240G3783 Erigeron canadensis HOM05D005029 ORTHO05D006052 1.1e-53 214.5 235 55.7
Oeu044675.2 Olea europaea HOM05D005029 ORTHO05D006052 5.9e-52 208.8 301 49.5
BcaC09g51764 Brassica carinata HOM05D005029 ORTHO05D006052 1.0e-51 208.0 251 57.8
CDE02G0552 Ceratophyllum demersum HOM05D005029 ORTHO05D006052 1.3e-51 207.6 284 48.2
A01p08140 Brassica napus HOM05D005029 ORTHO05D006052 3.2e-50 203.0 311 52.4
BolC1t00902H Brassica oleracea HOM05D005029 ORTHO05D006052 3.2e-50 203.0 301 50.2
unitig_699.g19404 Utricularia gibba HOM05D005029 ORTHO05D006052 4.2e-50 202.6 300 45.3
unitig_27.g24759 Utricularia gibba HOM05D005029 ORTHO05D006052 2.1e-49 200.3 253 49.0
C01p09110 Brassica napus HOM05D005029 ORTHO05D006052 8.8e-48 194.9 300 49.3
Duzib168G1982 Durio zibethinus HOM05D005029 ORTHO05D006052 4.2e-42 176.0 154 66.2
HPP92_004703 Vanilla planifolia HOM05D005029 ORTHO05D006052 4.7e-41 172.6 240 46.2
C07p57380 Brassica napus HOM05D005029 ORTHO05D006052 2.0e-39 167.2 187 56.1
Os04g0606800 Oryza sativa ssp. japonica HOM05D005029 ORTHO05D006052 1.3e-38 164.5 246 45.5
Zm00001eb071460 Zea mays HOM05D005029 ORTHO05D006052 1.3e-38 164.5 262 44.3
AagrBONN_evm.TU.Sc2ySwM_368.2110 Anthoceros agrestis HOM05D005029 ORTHO05D006052 2.2e-38 163.7 297 40.1
Mapoly0076s0086 Marchantia polymorpha HOM05D005029 ORTHO05D006052 2.2e-38 163.7 303 37.6
Lj5A672T26 Lonicera japonica HOM05D005029 ORTHO05D006052 2.8e-38 163.3 163 58.3
Migut.J00802 Erythranthe guttata HOM05D005029 ORTHO05D006052 3.1e-37 159.8 286 42.7
Rhsim01G0118000 Rhododendron simsii HOM05D005029 ORTHO05D006052 9.2e-37 158.3 231 44.2
SEGI_23735 Sequoiadendron giganteum HOM05D005029 ORTHO05D006052 1.2e-36 157.9 270 40.4
Zm00001eb430500 Zea mays HOM05D005029 ORTHO05D006052 1.6e-36 157.5 270 42.6
Pp3c9_8340 Physcomitrium patens HOM05D005029 ORTHO05D006052 2.0e-28 130.6 292 34.2
SMO358G0278 Selaginella moellendorffii HOM05D005029 ORTHO05D006052 6.6e-27 125.6 300 36.7
BcaB06g28011 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-24 117.5 90 68.9
BcaC05g25672 Brassica carinata HOM05D005029 ORTHO05D006052 1.8e-24 117.5 224 40.6
A03p59350 Brassica napus HOM05D005029 ORTHO05D006052 8.3e-22 108.6 134 53.7
BolC6t39910H Brassica oleracea HOM05D005029 ORTHO05D006052 2.4e-21 107.1 172 43.0
vmacro20818 Vaccinium macrocarpon HOM05D005029 ORTHO05D006052 6.8e-16 89.0 83 57.8
BcaB04g18770 Brassica carinata HOM05D005029 ORTHO05D006052 3.4e-15 86.7 91 58.2
CBR_g52634 Chara braunii HOM05D005029 ORTHO05D006052 6.6e-11 72.4 115 43.5
Aqoxy377s001 Aquilegia oxysepala HOM05D005029 ORTHO05D006052 1.5e-10 71.2 73 56.2
Aa31LG8G16260 Aethionema arabicum HOM05D005029 ORTHO05D006052 1.6e-09 67.8 104 42.3
Pp3c9_14880 Physcomitrium patens HOM05D005029 ORTHO05D006052 1.6e-09 67.8 116 31.9
Lj5C672T2 Lonicera japonica HOM05D005029 ORTHO05D006052 1.1e-08 65.1 57 61.4
BcaB06g26390 Brassica carinata HOM05D005029 ORTHO05D006052 5.2e-08 62.8 121 41.3
BolC5t30251H Brassica oleracea HOM05D005029 ORTHO05D006052 2.6e-07 60.5 104 39.4


User provided reference genes

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