Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 4.5e-144 514.6 265 100.0
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 4.7e-117 424.9 267 82.8
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 4.1e-97 358.6 265 73.2
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.6e-80 303.5 247 68.4
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 7.3e-46 188.3 264 49.6
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 2.0e-43 180.3 266 47.7
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 2.4e-41 173.3 275 46.2
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 3.2e-41 172.9 277 45.1
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 4.2e-41 172.6 267 44.9
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 7.1e-41 171.8 272 43.8
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 3.5e-40 169.5 267 44.6
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 1.0e-39 167.9 266 43.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.3e-39 167.5 268 44.4
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 2.3e-39 166.8 268 43.7
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 2.3e-39 166.8 267 44.2
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 3.0e-39 166.4 266 43.6
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.9e-39 166.0 265 41.5
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.9e-39 166.0 264 39.8
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 5.1e-39 165.6 273 47.3
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 9.6e-38 161.4 285 43.5
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.6e-37 160.6 276 43.5
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 2.1e-37 160.2 266 43.2
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.4e-36 157.5 270 43.0
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 2.4e-36 156.8 262 45.8
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 2.4e-36 156.8 266 41.0
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 2.4e-36 156.8 267 40.4
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 3.1e-36 156.4 280 42.1
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 3.1e-36 156.4 269 44.6
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.3e-36 155.6 269 43.1
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 5.3e-36 155.6 266 42.9
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 9.0e-36 154.8 274 41.6
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.5e-35 154.1 267 43.1
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 2.0e-35 153.7 265 43.0
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 2.6e-35 153.3 269 42.8
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 5.8e-35 152.1 266 42.1
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 2.9e-34 149.8 268 41.0
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 3.8e-34 149.4 271 43.2
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 3.8e-34 149.4 265 38.9
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.9e-34 149.1 265 41.9
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 6.5e-34 148.7 267 40.1
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.4e-34 148.3 267 41.9
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.1e-33 147.9 270 41.5
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 1.1e-33 147.9 265 38.9
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 2.5e-33 146.7 274 40.5
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 4.2e-33 146.0 265 41.1
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 5.5e-33 145.6 269 42.0
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.2e-32 144.4 266 37.6
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.0e-31 141.4 269 38.3
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 1.8e-31 140.6 267 38.2
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 1.8e-31 140.6 268 39.2
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 3.9e-31 139.4 263 40.3
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 5.1e-31 139.0 276 39.1
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 8.7e-31 138.3 269 39.0
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 1.1e-30 137.9 265 37.4
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 2.5e-30 136.7 265 40.0
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 4.3e-30 136.0 247 42.9
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 5.7e-30 135.6 210 51.0
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 1.6e-29 134.0 265 38.5
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 2.1e-29 133.7 276 39.1
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.8e-29 133.3 272 36.8
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 2.8e-29 133.3 247 43.3
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 6.2e-29 132.1 277 41.9
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 3.1e-28 129.8 267 36.7
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 4.0e-28 129.4 274 42.0
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 4.0e-28 129.4 267 37.5
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 5.3e-28 129.0 266 36.5
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 5.3e-28 129.0 274 38.7
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 6.9e-28 128.6 264 37.5
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.5e-27 127.5 272 37.9
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 2.0e-27 127.1 263 34.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.4e-27 126.3 264 38.6
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 4.5e-27 125.9 263 38.0
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 5.8e-27 125.6 267 37.1
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.3e-26 124.4 246 40.7
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 1.7e-26 124.0 263 36.5
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 6.5e-26 122.1 270 36.3
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.1e-25 121.3 267 37.5
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 1.4e-25 120.9 264 37.1
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 3.2e-25 119.8 267 35.6
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 9.3e-25 118.2 264 37.1
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 1.6e-24 117.5 264 34.5
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 2.1e-24 117.1 264 36.0
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.1e-24 117.1 258 34.5
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 4.6e-24 115.9 264 35.2
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 7.9e-24 115.2 269 39.0
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 1.3e-23 114.4 271 36.9
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 3.0e-23 113.2 277 36.8
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 3.9e-23 112.8 267 35.6
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 8.7e-23 111.7 269 36.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 2.5e-22 110.2 264 35.6
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.3e-22 109.8 266 38.0
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 5.7e-22 109.0 266 38.0
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 9.7e-22 108.2 264 34.1
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.8e-21 106.7 265 34.3
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.1e-20 104.8 269 36.8
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 1.4e-20 104.4 207 36.7
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 1.4e-20 104.4 265 34.0
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 1.8e-20 104.0 263 33.5
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 2.4e-20 103.6 272 34.2
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 4.1e-20 102.8 269 33.1
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 9.0e-20 101.7 268 36.2
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 4.5e-19 99.4 268 31.7
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 1.0e-18 98.2 270 31.5
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 3.8e-18 96.3 265 34.3
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 3.8e-18 96.3 268 37.3
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 1.1e-17 94.7 268 33.2
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 7.2e-17 92.0 280 31.8
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 2.1e-16 90.5 274 33.6
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 2.7e-16 90.1 206 35.0
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 3.0e-15 86.7 277 32.5
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 2.5e-14 83.6 270 32.2
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 2.8e-13 80.1 271 29.9
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 3.7e-13 79.7 160 39.4
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 1.4e-12 77.8 266 30.8
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 1.8e-12 77.4 202 33.7
Thecc.09G002900 Theobroma cacao HOM05D005081 ORTHO05D005506 3.1e-12 76.6 265 27.5
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.1e-12 76.6 202 33.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 3.1e-12 76.6 203 34.5
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 1.5e-11 74.3 264 31.8
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 1.5e-11 74.3 264 31.8
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 1.5e-11 74.3 264 31.8
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 5.9e-11 72.4 132 36.4
MD15G1102900 Malus domestica HOM05D005081 ORTHO05D005506 3.8e-10 69.7 265 29.4
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 6.5e-10 68.9 142 33.1
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 2.5e-09 67.0 145 32.4
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 2.5e-09 67.0 140 32.9
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 2.5e-09 67.0 140 33.6
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 2.7e-08 63.5 142 32.4
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 3.6e-08 63.2 129 44.2
Atru.chr7.2685 Acer truncatum HOM05D005081 ORTHO05D005506 3.9e-07 59.7 162 29.6
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 3.9e-07 59.7 121 34.7
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 5.1e-07 59.3 108 37.0
MD08G1124200 Malus domestica HOM05D005081 ORTHO05D005506 3.3e-06 56.6 182 28.0
Thhalv10009663m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 9.7e-06 55.1 129 33.3
SHI03105 Sapria himalayana HOM05D005081 ORTHO05D005506 9.7e-06 55.1 148 33.1


User provided reference genes

Program Settings