Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 4.4e-250 867.5 432 100.0
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 8.7e-214 746.9 477 81.8
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 1.9e-192 676.0 430 78.4
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 4.1e-179 631.7 435 73.1
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 5.3e-179 631.3 438 71.7
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 1.2e-178 630.2 448 72.5
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 7.7e-178 627.5 436 72.9
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 1.0e-177 627.1 435 72.4
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 5.0e-177 624.8 434 73.3
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 8.5e-177 624.0 436 71.8
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 1.9e-176 622.9 438 71.2
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 3.2e-176 622.1 437 71.6
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 4.7e-175 618.2 437 71.4
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 1.0e-174 617.1 434 72.8
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 2.3e-174 615.9 438 71.2
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.0e-174 615.1 438 71.0
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.5e-173 613.2 438 71.2
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 4.4e-173 611.7 434 71.0
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 7.5e-173 610.9 439 72.0
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 3.7e-172 608.6 437 70.3
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 1.8e-171 606.3 437 70.0
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 2.4e-171 605.9 441 70.1
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 5.4e-171 604.7 437 70.9
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 3.5e-170 602.1 431 69.1
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 4.5e-170 601.7 433 70.7
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 1.1e-168 597.0 433 69.1
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 1.1e-168 597.0 437 69.8
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 2.5e-168 595.9 437 69.8
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 2.5e-168 595.9 437 69.6
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 7.2e-168 594.3 438 68.3
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 1.2e-167 593.6 433 70.4
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 1.2e-167 593.6 438 68.9
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.6e-167 593.2 437 68.4
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 2.8e-167 592.4 437 68.4
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 3.6e-167 592.0 437 67.5
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.4e-166 590.1 443 67.3
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 1.8e-166 589.7 428 70.1
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 2.3e-166 589.3 433 69.1
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 2.3e-166 589.3 429 69.7
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 3.0e-166 589.0 440 68.6
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 4.0e-166 588.6 428 70.1
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 6.8e-166 587.8 449 69.3
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 2.0e-165 586.3 438 68.7
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 2.6e-165 585.9 406 72.7
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 7.5e-165 584.3 438 68.0
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 2.2e-164 582.8 428 69.6
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 6.3e-164 581.3 429 69.5
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 6.3e-164 581.3 438 68.5
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 1.8e-163 579.7 434 67.1
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 3.1e-163 578.9 438 67.8
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 4.1e-163 578.6 440 67.5
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 4.1e-163 578.6 438 68.0
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 2.0e-162 576.2 444 67.1
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 5.0e-161 571.6 428 67.8
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 8.6e-161 570.9 412 71.1
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 3.3e-160 568.9 438 67.8
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 3.3e-160 568.9 429 68.1
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 4.7e-159 565.1 415 69.9
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 6.1e-159 564.7 430 67.9
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 1.0e-158 563.9 434 66.8
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 8.9e-158 560.8 437 64.5
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 2.0e-157 559.7 433 66.1
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 5.0e-153 545.0 428 66.6
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 5.6e-152 541.6 444 64.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 2.8e-151 539.3 441 64.6
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 2.8e-151 539.3 460 61.3
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 8.0e-151 537.7 441 64.4
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 2.3e-150 536.2 454 61.7
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 5.2e-150 535.0 441 64.2
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 6.8e-150 534.6 454 61.7
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 4.4e-149 531.9 542 56.3
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 2.2e-148 529.6 382 70.7
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 3.3e-144 515.8 461 60.7
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 3.3e-144 515.8 437 60.4
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 3.2e-139 499.2 556 52.3
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 3.2e-139 499.2 483 56.9
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 7.1e-139 498.0 586 50.5
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 1.2e-138 497.3 427 59.7
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 3.0e-137 492.7 417 60.9
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 3.3e-136 489.2 429 60.8
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 4.3e-136 488.8 439 59.9
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 1.6e-135 486.9 351 71.5
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 2.1e-135 486.5 428 58.6
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 4.0e-134 482.3 524 53.1
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 5.2e-134 481.9 365 68.5
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 2.0e-133 479.9 433 58.2
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 2.4e-131 473.0 431 56.6
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 1.9e-128 463.4 427 56.2
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 3.1e-126 456.1 388 62.6
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 6.6e-121 438.3 431 55.7
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 2.1e-119 433.3 343 65.9
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 1.3e-116 424.1 372 61.3
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 2.8e-111 406.4 431 52.4
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 9.3e-107 391.3 302 66.9
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 1.1e-104 384.4 434 46.5
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.1e-102 377.9 292 66.4
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 2.0e-101 373.6 279 68.5
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 3.4e-101 372.9 292 65.8
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.3e-100 370.9 283 70.0
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 1.3e-100 370.9 406 53.2
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 1.7e-100 370.5 415 51.6
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 6.9e-94 348.6 268 66.8
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 1.1e-86 324.7 364 53.0
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 1.2e-85 321.2 370 49.7
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 3.2e-83 313.2 221 70.1
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 4.4e-80 302.8 213 69.0
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 1.3e-79 301.2 210 72.9
CSS0021007 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 1.0e-65 255.0 163 76.7
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 5.0e-60 236.1 419 35.1
AagrBONN_evm.TU.Sc2ySwM_344.300 Anthoceros agrestis HOM05D005327 ORTHO05D006655 2.0e-56 224.2 274 47.1
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.4e-56 223.0 163 69.3
Lj5A731T8 Lonicera japonica HOM05D005327 ORTHO05D006655 8.3e-55 218.8 158 66.5
HPP92_000243 Vanilla planifolia HOM05D005327 ORTHO05D006655 6.3e-47 192.6 136 69.1
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 3.2e-46 190.3 133 66.9
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 7.8e-45 185.7 160 60.6
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 6.6e-44 182.6 180 56.7
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 2.5e-43 180.6 166 59.0
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 4.9e-39 166.4 105 71.4
Thhalv10026961m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 3.0e-36 157.1 112 71.4
QL11p009727 Quercus lobata HOM05D005327 ORTHO05D006655 3.9e-28 130.2 80 77.5
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 1.5e-27 128.3 82 76.8
Sopen09g026020 Solanum pennellii HOM05D005327 ORTHO05D006655 8.1e-26 122.5 106 60.4
A01p41940 Brassica napus HOM05D005327 ORTHO05D006655 2.6e-24 117.5 81 66.7
QL11p009810 Quercus lobata HOM05D005327 ORTHO05D006655 9.9e-24 115.5 73 71.2
TPR.G2647 Trifolium pratense HOM05D005327 ORTHO05D006655 7.1e-22 109.4 73 71.2
Sabra18G0112000 Salix brachista HOM05D005327 ORTHO05D006655 2.1e-21 107.8 78 71.8
Gohir.D05G309350 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.6e-21 106.7 64 78.1
Gorai.009G329700 Gossypium raimondii HOM05D005327 ORTHO05D006655 7.8e-21 105.9 64 78.1
Gohir.D09G007150 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.7e-20 104.8 64 76.6
QL11p009732 Quercus lobata HOM05D005327 ORTHO05D006655 3.4e-16 90.5 72 63.9
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 9.9e-16 89.0 427 25.8
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 3.2e-14 84.0 422 25.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 7.1e-14 82.8 432 23.4
RcHm_v2.0_Chr4g0425841 Rosa chinensis HOM05D003564 ORTHO05D005332 1.2e-13 82.0 437 24.0
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.6e-13 81.6 422 24.9
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 2.1e-13 81.3 463 22.7
FvH4_4g20200 Fragaria vesca HOM05D003564 ORTHO05D005332 2.7e-13 80.9 437 24.0
DCAR_023360 Daucus carota HOM05D003564 ORTHO05D005332 3.5e-13 80.5 438 23.3
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 6.0e-13 79.7 448 25.2
FAN07G2223 Fragaria x ananassa HOM05D003564 ORTHO05D005332 6.0e-13 79.7 437 24.0
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 6.0e-13 79.7 441 23.4
SHI03098 Sapria himalayana HOM05D005327 ORTHO05D006655 6.0e-13 79.7 46 73.9
FAN12G0614 Fragaria x ananassa HOM05D003564 ORTHO05D005332 7.8e-13 79.3 441 23.8
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 7.8e-13 79.3 436 22.9
Mapoly0068s0036 Marchantia polymorpha HOM05D003564 ORTHO05D005332 1.0e-12 79.0 453 23.4
C03p49960 Brassica napus HOM05D005327 ORTHO05D006655 1.3e-12 78.6 44 81.8
unitig_8.g3092 Utricularia gibba HOM05D001060 ORTHO05D000905 5.1e-12 76.6 441 23.6
CiPaw.01G136200 Carya illinoinensis HOM05D003564 ORTHO05D005332 6.6e-12 76.3 438 23.1
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 6.6e-12 76.3 432 21.5
C03p47280 Brassica napus HOM05D005327 ORTHO05D006655 8.7e-12 75.9 44 79.5
BcaC01g03662 Brassica carinata HOM05D005327 ORTHO05D006655 1.1e-11 75.5 44 79.5
BcaC01g03663 Brassica carinata HOM05D005327 ORTHO05D006655 1.1e-11 75.5 44 79.5
BolC3t17287H Brassica oleracea HOM05D005327 ORTHO05D006655 1.1e-11 75.5 44 79.5
Medtr4g122670 Medicago truncatula HOM05D003564 ORTHO05D005332 1.1e-11 75.5 436 21.8
SGA_v2.0_scaffold367G50068 Striga asiatica HOM05D003564 ORTHO05D005332 1.5e-11 75.1 452 23.0
Dinv44265 Davidia involucrata HOM05D003564 ORTHO05D005332 1.9e-11 74.7 424 22.9
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 1.9e-11 74.7 440 23.6
Oeu046580.1 Olea europaea HOM05D003564 ORTHO05D005332 4.3e-11 73.6 436 22.5
Glyma.17G035800 Glycine max HOM05D003564 ORTHO05D005332 7.3e-11 72.8 440 23.2
Prupe.1G114000 Prunus persica HOM05D003564 ORTHO05D005332 7.3e-11 72.8 438 21.9
Mapoly0046s0013 Marchantia polymorpha HOM05D003564 ORTHO05D005332 2.1e-10 71.2 444 22.7
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 4.8e-10 70.1 440 23.2
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 6.2e-10 69.7 436 21.8
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 1.4e-09 68.6 430 21.4
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 3.1e-09 67.4 59 57.6
QL11p009748 Quercus lobata HOM05D005327 ORTHO05D000004 2.0e-08 64.7 59 61.0
vmacro20790 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 2.6e-08 64.3 39 74.4
QL11p009804 Quercus lobata HOM05D000003 ORTHO05D000004 4.4e-08 63.5 57 59.6
SHI03087 Sapria himalayana HOM05D005327 ORTHO05D006655 5.8e-08 63.2 58 60.3
unitig_22.g6346 Utricularia gibba HOM05D003564 ORTHO05D005332 9.9e-08 62.4 134 30.6
arahy.Tifrunner.gnm1.ann1.TSV22Z Arachis hypogaea HOM05D026511 ORTHO05D038857 2.9e-07 60.8 45 64.4
BolC3t16502H Brassica oleracea HOM05D003564 ORTHO05D005332 2.9e-07 60.8 263 26.2
CSS0006230 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 2.9e-07 60.8 33 90.9
Cfa026431 Carpinus fangiana HOM05D003564 ORTHO05D005332 6.4e-07 59.7 114 33.3
Solyc09g031890.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 6.4e-07 59.7 58 51.7
CAN.G311.70 Capsicum annuum HOM05D003564 ORTHO05D028498 2.4e-06 57.8 113 31.9


User provided reference genes

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