Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G070200 Populus trichocarpa HOM05D002570 ORTHO05D002689 2.5e-63 245.4 130 100.0
Sabra06G0052300 Salix brachista HOM05D002570 ORTHO05D002689 1.2e-57 226.5 130 87.7
Potri.018G131900 Populus trichocarpa HOM05D002570 ORTHO05D002689 5.2e-37 157.9 133 71.4
Dinv25488 Davidia involucrata HOM05D002570 ORTHO05D002689 2.1e-17 92.8 111 45.9
Lj4g0013925 Lotus japonicus HOM05D002570 ORTHO05D002689 8.7e-16 87.4 108 44.4
VMungo1215G3302 Vigna mungo HOM05D002570 ORTHO05D002689 1.9e-15 86.3 105 45.7
arahy.Tifrunner.gnm1.ann1.G00P8D Arachis hypogaea HOM05D002570 ORTHO05D002689 3.3e-15 85.5 78 52.6
Duzib251G0386 Durio zibethinus HOM05D002570 ORTHO05D002689 7.3e-15 84.3 99 46.5
FvH4_4g06680 Fragaria vesca HOM05D030384 ORTHO05D002689 9.6e-15 84.0 99 48.5
FAN12G3444 Fragaria x ananassa HOM05D030384 ORTHO05D002689 9.6e-15 84.0 99 48.5
Gohir.A12G155900 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.1e-14 82.8 109 42.2
Gohir.D12G159000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 2.1e-14 82.8 109 43.1
Phvul.003G137400 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.8e-14 82.4 68 55.9
Thecc.02G311400 Theobroma cacao HOM05D002570 ORTHO05D002689 3.6e-14 82.0 62 62.9
Gorai.008G172100 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.8e-13 79.7 109 42.2
Psat4g014680 Pisum sativum HOM05D002570 ORTHO05D002689 6.9e-13 77.8 106 40.6
Ciclev10010203m.g Citrus clementina HOM05D002570 ORTHO05D002689 9.0e-13 77.4 98 45.9
Lalb_Chr12g0199761 Lupinus albus HOM05D002570 ORTHO05D002689 9.0e-13 77.4 92 47.8
arahy.Tifrunner.gnm1.ann1.ANT7GU Arachis hypogaea HOM05D002570 ORTHO05D002689 1.5e-12 76.6 79 50.6
Glyma.17G055600 Glycine max HOM05D002570 ORTHO05D002689 2.0e-12 76.3 110 42.7
Cfa013397 Carpinus fangiana HOM05D002570 ORTHO05D002689 3.4e-12 75.5 102 39.2
TPR.G27566 Trifolium pratense HOM05D002570 ORTHO05D002689 3.4e-12 75.5 108 38.0
Actinidia08926 Actinidia chinensis HOM05D002570 ORTHO05D002689 7.6e-12 74.3 103 42.7
Gohir.A05G143000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.7e-11 73.2 101 42.6
Gohir.D05G145400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 3.8e-11 72.0 101 41.6
Gorai.009G149300 Gossypium raimondii HOM05D002570 ORTHO05D002689 3.8e-11 72.0 101 41.6
Medtr4g126400 Medicago truncatula HOM05D002570 ORTHO05D002689 3.8e-11 72.0 112 33.9
TWI60G0727 Tripterygium wilfordii HOM05D002570 ORTHO05D002689 3.8e-11 72.0 74 51.4
FAN22G1225 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.9e-11 71.6 66 54.5
Thecc.06G132900 Theobroma cacao HOM05D002570 ORTHO05D002689 1.4e-10 70.1 103 41.7
FAN17G2389 Fragaria x ananassa HOM05D030384 ORTHO05D002689 1.9e-10 69.7 73 50.7
PGR102G1262 Punica granatum HOM05D002570 ORTHO05D002689 1.9e-10 69.7 103 41.7
SalBow1G2645 Salvia bowleyana HOM05D002570 ORTHO05D002689 1.9e-10 69.7 75 45.3
Hma1.2p1_1208F.1_g267175 Hydrangea macrophylla HOM05D002570 ORTHO05D002689 5.4e-10 68.2 75 45.3
Cc04_g05480 Coffea canephora HOM05D002570 ORTHO05D002689 7.1e-10 67.8 112 36.6
COL.COLO4_30895 Corchorus olitorius HOM05D002570 ORTHO05D002689 7.1e-10 67.8 103 40.8
CSS0011601 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.2e-09 67.0 75 45.3
CSS0038527 Camellia sinensis var. sinensis HOM05D002570 ORTHO05D002689 1.2e-09 67.0 75 45.3
Duzib192G0671 Durio zibethinus HOM05D002570 ORTHO05D002689 1.2e-09 67.0 103 41.7
Glyma.13G103400 Glycine max HOM05D002570 ORTHO05D002689 2.1e-09 66.2 108 41.7
Solyc03g117840.4 Solanum lycopersicum HOM05D002570 ORTHO05D002689 2.1e-09 66.2 102 41.2
Prupe.1G069600 Prunus persica HOM05D002570 ORTHO05D002689 2.7e-09 65.9 102 38.2
Rhsim08G0200900 Rhododendron simsii HOM05D002570 ORTHO05D002689 2.7e-09 65.9 70 45.7
PGSC0003DMG400014220 Solanum tuberosum HOM05D002570 ORTHO05D002689 2.7e-09 65.9 102 39.2
Oeu033446.1 Olea europaea HOM05D002570 ORTHO05D002689 3.5e-09 65.5 65 46.2
Sopen03g036750 Solanum pennellii HOM05D002570 ORTHO05D002689 3.5e-09 65.5 102 40.2
MSTRG.22832 Avicennia marina HOM05D002570 ORTHO05D002689 4.6e-09 65.1 65 47.7
Dinv13685 Davidia involucrata HOM05D002570 ORTHO05D002689 7.8e-09 64.3 103 39.8
Dinv21443 Davidia involucrata HOM05D002570 ORTHO05D002689 7.8e-09 64.3 103 39.8
MSTRG.11212 Avicennia marina HOM05D002570 ORTHO05D002689 1.0e-08 63.9 72 43.1
CAN.G1008.23 Capsicum annuum HOM05D002570 ORTHO05D002689 1.0e-08 63.9 64 48.4
Migut.D01154 Erythranthe guttata HOM05D002570 ORTHO05D002689 1.0e-08 63.9 65 47.7
Dinv23257 Davidia involucrata HOM05D002570 ORTHO05D002689 1.3e-08 63.5 103 38.8
vmacro19088 Vaccinium macrocarpon HOM05D002570 ORTHO05D002689 1.3e-08 63.5 103 37.9
Nitab4.5_0004194g0090 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.7e-08 63.2 80 43.8
Nitab4.5_0007293g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 1.7e-08 63.2 80 43.8
Nn8g40408 Nelumbo nucifera HOM05D002570 ORTHO05D002689 2.3e-08 62.8 103 38.8
Manes.11G071400 Manihot esculenta HOM05D002570 ORTHO05D002689 5.1e-08 61.6 103 36.9
Peaxi162Scf00314g00938 Petunia axillaris HOM05D002570 ORTHO05D002689 5.1e-08 61.6 80 43.8
MBI14_g19442_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 6.6e-08 61.2 76 42.1
QL05p081283 Quercus lobata HOM05D002570 ORTHO05D002689 6.6e-08 61.2 103 40.8
ClCG09G003530 Citrullus lanatus HOM05D002570 ORTHO05D002689 8.7e-08 60.8 72 44.4
Gohir.A10G049400 Gossypium hirsutum HOM05D002570 ORTHO05D002689 8.7e-08 60.8 85 38.8
MD09G1230400 Malus domestica HOM05D002570 ORTHO05D002689 8.7e-08 60.8 101 38.6
MELO3C023490.2 Cucumis melo HOM05D002570 ORTHO05D002689 1.1e-07 60.5 72 44.4
Gohir.D10G050000 Gossypium hirsutum HOM05D002570 ORTHO05D002689 1.5e-07 60.1 101 38.6
Gorai.011G053600 Gossypium raimondii HOM05D002570 ORTHO05D002689 1.5e-07 60.1 101 38.6
Actinidia25496 Actinidia chinensis HOM05D002570 ORTHO05D002689 1.9e-07 59.7 80 41.2
GSVIVG01016063001 Vitis vinifera HOM05D002570 ORTHO05D002689 1.9e-07 59.7 85 40.0
CiPaw.01G051100 Carya illinoinensis HOM05D002570 ORTHO05D002689 2.5e-07 59.3 103 38.8
CsaV3_7G031670 Cucumis sativus L. HOM05D002570 ORTHO05D002689 2.5e-07 59.3 72 43.1
Actinidia18273 Actinidia chinensis HOM05D002570 ORTHO05D002689 3.3e-07 58.9 73 41.1
MBI16_g27293_MAGBIO Magnolia biondii HOM05D002570 ORTHO05D002689 3.3e-07 58.9 72 41.7
Prupe.3G106900 Prunus persica HOM05D002570 ORTHO05D002689 4.3e-07 58.5 104 36.5
MD17G1229300 Malus domestica HOM05D002570 ORTHO05D002689 5.6e-07 58.2 65 47.7
RcHm_v2.0_Chr2g0131671 Rosa chinensis HOM05D002570 ORTHO05D002689 5.6e-07 58.2 103 38.8
TAR383G0799 Trochodendron aralioides HOM05D002570 ORTHO05D002689 5.6e-07 58.2 115 34.8
Lsat_1_v5_gn_1_30640 Lactuca sativa HOM05D002570 ORTHO05D002689 7.3e-07 57.8 103 35.9
Manes.04G097900 Manihot esculenta HOM05D002570 ORTHO05D002689 7.3e-07 57.8 75 41.3
Potri.001G037400 Populus trichocarpa HOM05D002570 ORTHO05D002689 7.3e-07 57.8 103 37.9
Sed0010699 Sechium edule HOM05D002570 ORTHO05D002689 7.3e-07 57.8 69 43.5
Migut.I00642 Erythranthe guttata HOM05D002570 ORTHO05D002689 9.6e-07 57.4 103 35.0
FAN05G0139 Fragaria x ananassa HOM05D002570 ORTHO05D002689 9.6e-07 57.4 103 36.9
FAN05G5383 Fragaria x ananassa HOM05D002570 ORTHO05D002689 9.6e-07 57.4 103 36.9
Oeu012866.1 Olea europaea HOM05D002570 ORTHO05D002689 9.6e-07 57.4 103 34.0
Sed0009460 Sechium edule HOM05D002570 ORTHO05D002689 9.6e-07 57.4 72 41.7
SGA_v2.0_scaffold74G24622 Striga asiatica HOM05D002570 ORTHO05D002689 9.6e-07 57.4 72 40.3
FvH4_6g28000 Fragaria vesca HOM05D002570 ORTHO05D002689 1.3e-06 57.0 103 36.9
FAN02G4288 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.3e-06 57.0 103 36.9
FAN14G4539 Fragaria x ananassa HOM05D002570 ORTHO05D002689 1.3e-06 57.0 103 36.9
Ciclev10026849m.g Citrus clementina HOM05D002570 ORTHO05D002689 1.6e-06 56.6 74 41.9
Eucgr.J03139 Eucalyptus grandis HOM05D002570 ORTHO05D002689 1.6e-06 56.6 75 40.0
Atru.chr1.2751 Acer truncatum HOM05D002570 ORTHO05D002689 2.8e-06 55.8 72 41.7
Os04g0603400 Oryza sativa ssp. japonica HOM05D002570 ORTHO05D002689 2.8e-06 55.8 95 37.9
Phvul.005G184200 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 2.8e-06 55.8 55 49.1
CANSAT64G2315 Cannabis sativa HOM05D002570 ORTHO05D002689 3.6e-06 55.5 104 35.6
Haze_15246 Corylus avellana HOM05D002570 ORTHO05D002689 3.6e-06 55.5 110 37.3
unitig_22.g6281 Utricularia gibba HOM05D002570 ORTHO05D002689 3.6e-06 55.5 70 37.1
FAN09G2432 Fragaria x ananassa HOM05D002570 ORTHO05D002689 4.8e-06 55.1 103 35.9
HanXRQChr02g0033781 Helianthus annuus HOM05D002570 ORTHO05D002689 4.8e-06 55.1 65 43.1
unitig_8.g3045 Utricularia gibba HOM05D002570 ORTHO05D002689 4.8e-06 55.1 76 35.5
Nitab4.5_0007120g0040 Nicotiana tabacum HOM05D002570 ORTHO05D002689 6.2e-06 54.7 100 37.0
Glyma.13G371800 Glycine max HOM05D002570 ORTHO05D002689 8.1e-06 54.3 107 36.4
Nitab4.5_0007120g0020 Nicotiana tabacum HOM05D002570 ORTHO05D002689 8.1e-06 54.3 100 37.0
Phvul.004G022100 Phaseolus vulgaris HOM05D002570 ORTHO05D002689 8.1e-06 54.3 92 30.4


User provided reference genes

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