Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G068700 Populus trichocarpa HOM05D006980 ORTHO05D008704 2.7e-118 429.9 224 100.0
Manes.09G055100 Manihot esculenta HOM05D006980 ORTHO05D008704 5.1e-77 292.7 224 73.2
Prupe.7G109800 Prunus persica HOM05D006980 ORTHO05D008704 4.8e-75 286.2 213 64.8
TWI77G0642 Tripterygium wilfordii HOM05D006980 ORTHO05D008704 6.1e-70 269.2 225 59.1
QL07p038724 Quercus lobata HOM05D006980 ORTHO05D008704 2.4e-66 257.3 167 71.3
RcHm_v2.0_Chr3g0473791 Rosa chinensis HOM05D006980 ORTHO05D008704 3.4e-65 253.4 222 56.3
CiPaw.09G014400 Carya illinoinensis HOM05D006980 ORTHO05D008704 6.5e-64 249.2 188 63.3
FAN05G0999 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.1e-63 248.4 180 64.4
Cfa016610 Carpinus fangiana HOM05D006980 ORTHO05D008704 1.9e-63 247.7 175 65.7
QL07p038975 Quercus lobata HOM05D006980 ORTHO05D008704 7.2e-63 245.7 167 68.9
CANSAT64G1568 Cannabis sativa HOM05D006980 ORTHO05D008704 2.1e-62 244.2 180 65.6
Eucgr.G00971 Eucalyptus grandis HOM05D006980 ORTHO05D008704 3.6e-62 243.4 224 56.2
Cpa.g.sc166.4 Carica papaya HOM05D006980 ORTHO05D008704 1.1e-60 238.4 223 55.2
Ciclev10011570m.g Citrus clementina HOM05D006980 ORTHO05D008704 1.5e-60 238.0 183 61.7
COL.COLO4_29731 Corchorus olitorius HOM05D006980 ORTHO05D008704 2.6e-60 237.3 216 56.0
CsaV3_6G007180 Cucumis sativus L. HOM05D006980 ORTHO05D008704 3.3e-60 236.9 215 56.3
Sc02g0000270 Simmondsia chinensis HOM05D006980 ORTHO05D008704 4.4e-60 236.5 181 59.7
Thecc.05G089500 Theobroma cacao HOM05D006980 ORTHO05D008704 4.4e-60 236.5 220 53.6
Atru.chr8.1533 Acer truncatum HOM05D006980 ORTHO05D008704 7.4e-60 235.7 178 62.9
SHI12421 Sapria himalayana HOM05D006980 ORTHO05D008704 3.7e-59 233.4 224 60.3
EL10Ac6g13708 Beta vulgaris HOM05D006980 ORTHO05D008704 4.8e-59 233.0 181 60.8
PGR142G3286 Punica granatum HOM05D006980 ORTHO05D008704 4.8e-59 233.0 179 63.1
Medtr7g104640 Medicago truncatula HOM05D006980 ORTHO05D008704 1.1e-58 231.9 177 61.0
Actinidia05428 Actinidia chinensis HOM05D006980 ORTHO05D008704 1.4e-58 231.5 185 57.8
Lj1g0023344 Lotus japonicus HOM05D006980 ORTHO05D008704 2.4e-58 230.7 225 54.2
THA.LOC104804920 Tarenaya hassleriana HOM05D006980 ORTHO05D008704 3.5e-57 226.9 184 56.5
Sed0006527 Sechium edule HOM05D006980 ORTHO05D008704 5.9e-57 226.1 214 55.1
Ah.02g130100 Amaranthus hybridus HOM05D006980 ORTHO05D008704 1.3e-56 224.9 180 58.3
MELO3C022409.2 Cucumis melo HOM05D006980 ORTHO05D008704 1.3e-56 224.9 215 54.0
TPR.G19555 Trifolium pratense HOM05D006980 ORTHO05D008704 2.2e-56 224.2 173 59.5
CARHR130480 Cardamine hirsuta HOM05D006980 ORTHO05D008704 6.5e-56 222.6 222 47.7
Dinv21206 Davidia involucrata HOM05D006980 ORTHO05D008704 6.5e-56 222.6 184 56.5
ClCG06G001250 Citrullus lanatus HOM05D006980 ORTHO05D008704 1.1e-55 221.9 142 71.1
Rhsim03G0075000 Rhododendron simsii HOM05D006980 ORTHO05D008704 1.1e-55 221.9 181 58.0
TAR633G1277 Trochodendron aralioides HOM05D006980 ORTHO05D008704 2.5e-55 220.7 180 60.6
AL4G32340 Arabidopsis lyrata HOM05D006980 ORTHO05D008704 4.2e-55 219.9 182 53.8
Sabra06G0051200 Salix brachista HOM05D006980 ORTHO05D008704 9.4e-55 218.8 107 95.3
AT2G36240 Arabidopsis thaliana HOM05D006980 ORTHO05D008704 1.6e-54 218.0 213 47.4
PSO541G2622 Papaver somniferum HOM05D006980 ORTHO05D008704 2.7e-54 217.2 180 58.9
CSS0041599 Camellia sinensis var. sinensis HOM05D006980 ORTHO05D008704 4.7e-54 216.5 181 56.4
Aa31LG5G21360 Aethionema arabicum HOM05D006980 ORTHO05D008704 1.0e-53 215.3 213 48.4
arahy.Tifrunner.gnm1.ann1.3P0NFT Arachis hypogaea HOM05D006980 ORTHO05D008704 1.8e-53 214.5 174 57.5
arahy.Tifrunner.gnm1.ann1.IK7M5W Arachis hypogaea HOM05D006980 ORTHO05D008704 1.8e-53 214.5 174 56.9
Aqoxy2G01180 Aquilegia oxysepala HOM05D006980 ORTHO05D008704 2.3e-53 214.2 180 57.8
HanXRQChr02g0032651 Helianthus annuus HOM05D006980 ORTHO05D008704 6.7e-53 212.6 188 54.3
Sp4g18460 Schrenkiella parvula HOM05D006980 ORTHO05D008704 4.4e-52 209.9 213 47.4
PSO675G7214 Papaver somniferum HOM05D006980 ORTHO05D008704 5.7e-52 209.5 179 57.5
BcaC02g11732 Brassica carinata HOM05D006980 ORTHO05D008704 7.5e-52 209.1 205 50.2
BolC4t22838H Brassica oleracea HOM05D006980 ORTHO05D008704 7.5e-52 209.1 205 50.2
BcaB02g09370 Brassica carinata HOM05D006980 ORTHO05D008704 1.3e-51 208.4 204 49.0
AUR62014076 Chenopodium quinoa HOM05D006980 ORTHO05D008704 2.2e-51 207.6 181 55.2
Lsat_1_v5_gn_5_164841 Lactuca sativa HOM05D006980 ORTHO05D008704 2.8e-51 207.2 187 54.0
Cc02_g28460 Coffea canephora HOM05D006980 ORTHO05D008704 3.7e-51 206.8 179 51.4
AUR62005415 Chenopodium quinoa HOM05D006980 ORTHO05D008704 6.3e-51 206.1 185 54.1
C04p11900 Brassica napus HOM05D006980 ORTHO05D008704 1.8e-50 204.5 180 53.9
SalBow3G1904 Salvia bowleyana HOM05D006980 ORTHO05D008704 2.4e-50 204.1 180 54.4
BraA05t19913Z Brassica rapa HOM05D006980 ORTHO05D008704 2.7e-49 200.7 177 53.7
Duzib106G0372 Durio zibethinus HOM05D006980 ORTHO05D008704 3.5e-49 200.3 184 53.8
Peaxi162Scf00045g00156 Petunia axillaris HOM05D006980 ORTHO05D008704 4.5e-49 199.9 176 54.5
Oeu056884.1 Olea europaea HOM05D006980 ORTHO05D008704 1.3e-48 198.4 176 54.0
Nitab4.5_0000025g0100 Nicotiana tabacum HOM05D006980 ORTHO05D008704 1.7e-48 198.0 179 53.1
A05p09600 Brassica napus HOM05D006980 ORTHO05D008704 2.2e-48 197.6 203 50.7
ECA248G2176 Erigeron canadensis HOM05D006980 ORTHO05D008704 2.9e-48 197.2 226 47.8
Nitab4.5_0003259g0020 Nicotiana tabacum HOM05D006980 ORTHO05D008704 2.9e-48 197.2 179 53.1
PGSC0003DMG401009543 Solanum tuberosum HOM05D006980 ORTHO05D008704 2.9e-48 197.2 212 47.6
ATR0051G062 Amborella trichopoda HOM05D006980 ORTHO05D008704 5.0e-48 196.4 180 51.1
Migut.J01034 Erythranthe guttata HOM05D006980 ORTHO05D008704 6.5e-48 196.1 185 53.0
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 8.5e-48 195.7 180 52.2
Solyc08g006170.1 Solanum lycopersicum HOM05D006980 ORTHO05D008704 1.5e-47 194.9 208 48.1
Lj2P137T25 Lonicera japonica HOM05D006980 ORTHO05D008704 2.5e-47 194.1 148 58.1
CAN.G2030.1 Capsicum annuum HOM05D006980 ORTHO05D008704 3.2e-47 193.7 179 53.1
MSTRG.19261 Avicennia marina HOM05D006980 ORTHO05D008704 4.2e-47 193.4 184 49.5
Sopen08g002140 Solanum pennellii HOM05D006980 ORTHO05D008704 4.2e-47 193.4 208 47.6
CAN.G137.42 Capsicum annuum HOM05D006980 ORTHO05D008704 1.2e-46 191.8 163 55.2
Gorai.009G402600 Gossypium raimondii HOM05D006980 ORTHO05D008704 2.7e-46 190.7 184 51.6
Lalb_Chr20g0111701 Lupinus albus HOM05D006980 ORTHO05D008704 3.6e-46 190.3 204 51.0
BcaC02g11726 Brassica carinata HOM05D006980 ORTHO05D008704 4.0e-45 186.8 179 49.2
BcaC02g11728 Brassica carinata HOM05D006980 ORTHO05D008704 4.0e-45 186.8 179 49.2
SGA_v2.0_scaffold13G06715 Striga asiatica HOM05D006980 ORTHO05D008704 6.8e-45 186.0 170 48.2
Nn6g34894 Nelumbo nucifera HOM05D006980 ORTHO05D008704 1.2e-44 185.3 153 60.1
BcaB02g09372 Brassica carinata HOM05D006980 ORTHO05D008704 2.0e-44 184.5 167 52.1
Eucgr.G00972 Eucalyptus grandis HOM05D006980 ORTHO05D008704 5.7e-44 183.0 209 49.3
GSVIVG01029738001 Vitis vinifera HOM05D006980 ORTHO05D008704 1.3e-43 181.8 180 52.8
BcaC02g11731 Brassica carinata HOM05D006980 ORTHO05D008704 3.5e-41 173.7 140 52.9
Cc00_g27900 Coffea canephora HOM05D006980 ORTHO05D008704 1.2e-38 165.2 179 45.8
Glyma.03G196000 Glycine max HOM05D006980 ORTHO05D008704 2.1e-38 164.5 193 47.2
GSVIVG01015930001 Vitis vinifera HOM05D006980 ORTHO05D008704 2.7e-38 164.1 180 49.4
Thhalv10016603m.g Eutrema salsugineum HOM05D006980 ORTHO05D008704 1.4e-37 161.8 184 42.4
Phvul.001G190300 Phaseolus vulgaris HOM05D006980 ORTHO05D008704 3.0e-37 160.6 157 49.0
VMungo1383G3509 Vigna mungo HOM05D006980 ORTHO05D008704 3.0e-37 160.6 157 49.0
Haze_19614 Corylus avellana HOM05D006980 ORTHO05D008704 4.4e-36 156.8 107 64.5
HPP92_011900 Vanilla planifolia HOM05D006980 ORTHO05D008704 7.5e-36 156.0 171 47.4
FAN02G3599 Fragaria x ananassa HOM05D006980 ORTHO05D008704 1.4e-34 151.8 107 65.4
SEGI_13947 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.4e-34 151.8 173 43.4
SEGI_40503 Sequoiadendron giganteum HOM05D006980 ORTHO05D008704 1.4e-34 151.8 173 43.4
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 1.8e-34 151.4 114 59.6
arahy.Tifrunner.gnm1.ann1.FQN2WV Arachis hypogaea HOM05D006980 ORTHO05D008704 5.0e-32 143.3 112 58.9
Ca_09007_v3 Cicer arietinum L. HOM05D006980 ORTHO05D008704 2.1e-30 137.9 107 60.7
Psat3g033240 Pisum sativum HOM05D006980 ORTHO05D008704 6.4e-27 126.3 107 57.0
Eucgr.G00976 Eucalyptus grandis HOM05D006980 ORTHO05D008704 7.0e-26 122.9 215 38.1
DCAR_013476 Daucus carota HOM05D006980 ORTHO05D008704 4.6e-25 120.2 87 58.6
FvH4_6g18780 Fragaria vesca HOM05D006980 ORTHO05D008704 2.9e-11 74.3 43 76.7
FAN14G4048 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.9e-11 74.3 43 76.7
Manes.07G071796 Manihot esculenta HOM05D006980 ORTHO05D008704 1.9e-10 71.6 42 69.0
FAN05G0477 Fragaria x ananassa HOM05D006980 ORTHO05D008704 2.4e-10 71.2 43 74.4
Zm00001eb365120 Zea mays HOM05D006980 ORTHO05D008704 4.1e-10 70.5 221 27.6
Os01g0908800 Oryza sativa ssp. japonica HOM05D006980 ORTHO05D008704 9.2e-10 69.3 166 28.9
Carub.0004s1800 Capsella rubella HOM05D006980 ORTHO05D008704 1.3e-08 65.5 53 50.9
SEGI_09666 Sequoiadendron giganteum HOM05D007402 ORTHO05D003673 9.5e-07 59.3 142 26.8


User provided reference genes

Program Settings