Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 1.2e-97 359.8 175 100.0
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 4.8e-94 347.8 175 95.4
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 2.4e-93 345.5 175 94.9
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 4.6e-89 331.3 175 90.9
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 6.1e-89 330.9 172 92.4
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 1.8e-88 329.3 172 91.9
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 3.0e-88 328.6 172 92.4
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 3.9e-88 328.2 172 91.9
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 3.9e-88 328.2 172 91.9
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 5.1e-88 327.8 172 90.7
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 8.7e-88 327.0 172 91.3
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 8.7e-88 327.0 172 90.7
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 91.9
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.5e-87 326.2 172 90.1
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 2.5e-87 325.5 172 91.9
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 3.3e-87 325.1 172 91.3
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 5.7e-87 324.3 172 90.7
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 9.7e-87 323.6 172 90.1
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.3e-86 323.2 173 90.2
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 1.3e-86 323.2 171 90.6
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 91.9
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 89.5
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 2.2e-86 322.4 172 90.7
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 2.8e-86 322.0 172 89.5
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 4.8e-86 321.2 172 90.1
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 4.8e-86 321.2 171 90.6
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 4.8e-86 321.2 175 87.4
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 6.3e-86 320.9 172 89.5
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.1e-85 320.1 172 89.0
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 1.4e-85 319.7 175 87.4
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 89.5
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 1.8e-85 319.3 172 89.0
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 4.1e-85 318.2 172 89.5
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 86.9
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 5.3e-85 317.8 172 89.0
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 5.3e-85 317.8 172 89.0
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 85.7
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 85.7
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.2e-84 316.6 171 89.5
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 2.0e-84 315.8 174 86.2
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 88.4
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 88.4
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 2.6e-84 315.5 172 87.8
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 3.4e-84 315.1 174 87.9
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 3.4e-84 315.1 171 88.9
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 3.4e-84 315.1 171 87.1
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 3.4e-84 315.1 174 85.6
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 4.5e-84 314.7 172 87.8
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 4.5e-84 314.7 172 87.2
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 5.9e-84 314.3 174 85.6
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 5.9e-84 314.3 175 85.7
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 7.7e-84 313.9 175 85.7
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 7.7e-84 313.9 172 87.2
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 1.0e-83 313.5 175 84.6
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 1.0e-83 313.5 175 85.1
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 1.0e-83 313.5 175 85.1
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.0e-83 313.5 172 87.2
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 89.5
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 85.7
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 87.8
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 1.3e-83 313.2 172 86.0
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 85.7
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 84.6
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 3.8e-83 311.6 174 85.1
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.8e-83 311.6 174 85.1
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 3.8e-83 311.6 175 84.6
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 87.2
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 3.8e-83 311.6 172 84.9
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 5.0e-83 311.2 175 84.6
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 8.5e-83 310.5 174 84.5
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 87.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 87.8
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 1.1e-82 310.1 172 85.5
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 4.2e-82 308.1 171 86.0
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 5.5e-82 307.8 172 85.5
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 5.5e-82 307.8 172 83.7
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 87.2
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 7.2e-82 307.4 172 83.1
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 1.2e-81 306.6 173 85.5
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.6e-81 306.2 172 86.0
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 8.8e-80 300.4 171 86.0
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 8.8e-80 300.4 172 84.9
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 1.1e-79 300.1 172 84.3
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.5e-79 299.7 223 70.4
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 1.5e-79 299.7 174 80.5
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 3.3e-79 298.5 172 83.7
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.3e-79 298.5 174 79.9
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.7e-79 297.7 187 78.1
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 9.7e-79 297.0 175 80.0
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 9.7e-79 297.0 174 80.5
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 9.7e-79 297.0 174 80.5
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 9.7e-79 297.0 174 80.5
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 9.7e-79 297.0 174 80.5
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.3e-78 296.6 159 89.3
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 4.8e-78 294.7 176 79.5
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 8.2e-78 293.9 178 81.5
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.4e-77 293.1 169 81.7
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 1.4e-77 293.1 174 79.9
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.6e-76 288.9 158 89.2
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 2.6e-68 262.3 151 84.1
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.0e-67 260.4 149 85.9
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 2.9e-67 258.8 146 85.6
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 6.5e-67 257.7 174 70.7
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 1.5e-66 256.5 172 69.2
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 3.6e-65 251.9 172 65.7
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.8e-64 249.6 172 66.3
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 1.5e-63 246.5 135 89.6
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 7.4e-63 244.2 126 92.9
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 7.0e-61 237.7 130 87.7
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 9.1e-61 237.3 127 89.0
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 1.2e-60 236.9 173 71.1
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 3.5e-60 235.3 130 87.7
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.0e-59 233.8 134 85.8
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 5.0e-59 231.5 145 79.3
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 6.5e-59 231.1 130 85.4
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 6.5e-59 231.1 130 85.4
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.5e-58 229.9 128 86.7
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 1.5e-58 229.9 135 83.0
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 3.2e-58 228.8 127 84.3
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 2.1e-57 226.1 176 63.6
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 2.1e-57 226.1 127 82.7
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 9.8e-55 217.2 129 80.6
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.4e-53 213.4 163 69.3
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 1.9e-50 203.0 126 80.2
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 3.6e-49 198.7 130 73.1
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 8.8e-48 194.1 128 75.0
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 2.4e-45 186.0 130 68.5
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 6.6e-43 177.9 131 71.8
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 2.8e-41 172.6 96 88.5
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.4e-38 161.4 92 87.0
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.2e-36 157.1 91 85.7
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 2.3e-35 152.9 88 83.0
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.6e-35 151.4 92 82.6
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-34 150.6 95 81.1
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-34 150.6 95 78.9
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.9e-34 149.8 107 75.7
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.6e-34 148.3 93 74.2
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 7.3e-34 147.9 104 73.1
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.6e-33 146.7 80 83.8
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 4.9e-30 135.2 77 87.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 6.0e-28 128.3 108 59.3
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 1.9e-26 123.2 192 35.4
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.9e-26 123.2 80 73.8
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.2e-25 118.2 76 78.9
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 8.9e-24 114.4 67 71.6
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 3.5e-20 102.4 89 59.6
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 1.3e-19 100.5 57 82.5
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 1.6e-12 77.0 37 83.8


User provided reference genes

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