Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 5.7e-86 320.9 160 100.0
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 2.0e-75 285.8 209 72.7
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 5.9e-75 284.3 160 84.4
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 7.8e-75 283.9 160 83.8
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.8e-74 281.6 160 84.4
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 3.8e-74 281.6 160 84.4
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 1.5e-73 279.6 160 82.5
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 4.3e-73 278.1 157 84.1
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 5.6e-73 277.7 158 82.9
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 9.5e-73 276.9 160 81.9
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 1.2e-72 276.6 156 83.3
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 3.6e-72 275.0 160 81.9
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.6e-72 275.0 160 81.9
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.6e-72 275.0 160 81.9
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.6e-72 275.0 160 81.9
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.6e-72 275.0 160 81.9
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 3.6e-72 275.0 160 81.9
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 8.0e-72 273.9 160 80.6
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 8.0e-72 273.9 160 82.5
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.0e-71 273.5 156 82.7
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 1.4e-71 273.1 156 82.7
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.8e-71 272.7 157 82.8
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 3.1e-71 271.9 160 80.6
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 3.1e-71 271.9 158 82.3
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 4.0e-71 271.6 156 82.1
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 6.8e-71 270.8 158 80.4
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 6.8e-71 270.8 154 81.8
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 6.8e-71 270.8 153 82.4
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 6.8e-71 270.8 153 82.4
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 6.8e-71 270.8 157 81.5
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.9e-71 270.4 154 83.1
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 1.2e-70 270.0 158 79.1
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.2e-70 270.0 154 81.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.5e-70 269.6 160 80.6
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 2.0e-70 269.2 156 81.4
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.6e-70 268.9 156 81.4
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 3.4e-70 268.5 158 78.5
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 3.4e-70 268.5 160 80.0
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 3.4e-70 268.5 160 79.4
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.4e-70 268.1 160 80.6
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 7.5e-70 267.3 158 79.1
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 9.8e-70 266.9 157 80.9
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 9.8e-70 266.9 154 81.8
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 2.2e-69 265.8 158 79.1
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 2.9e-69 265.4 158 78.5
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 1.4e-68 263.1 160 78.1
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.4e-68 263.1 157 79.0
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 2.4e-68 262.3 154 80.5
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 5.4e-68 261.2 158 75.9
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 7.0e-68 260.8 156 77.6
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 7.0e-68 260.8 157 77.7
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 7.0e-68 260.8 160 75.6
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 9.2e-68 260.4 157 78.3
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 9.2e-68 260.4 158 77.2
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.2e-67 260.0 158 77.2
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.5e-67 258.5 160 74.4
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 1.0e-66 256.9 156 78.2
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 1.3e-66 256.5 154 79.2
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 154 79.2
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.7e-66 256.1 154 79.2
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.7e-66 256.1 158 75.3
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 3.0e-66 255.4 155 77.4
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 3.0e-66 255.4 158 77.2
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 3.9e-66 255.0 157 76.4
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 8.6e-66 253.8 156 78.8
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 8.6e-66 253.8 154 76.6
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 8.6e-66 253.8 157 75.2
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.1e-65 253.4 157 74.5
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.9e-65 252.7 160 73.8
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 2.5e-65 252.3 157 75.2
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 4.3e-65 251.5 160 73.8
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 5.6e-65 251.1 155 76.1
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 5.6e-65 251.1 158 75.3
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 7.3e-65 250.8 157 73.9
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 7.3e-65 250.8 160 73.1
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 7.3e-65 250.8 157 75.2
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 1.2e-64 250.0 156 74.4
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 72.5
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 1.6e-64 249.6 154 75.3
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.6e-64 249.6 160 72.5
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 1.6e-64 249.6 156 75.6
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 2.1e-64 249.2 154 76.0
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.8e-64 248.8 160 73.8
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.6e-64 248.4 157 73.9
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 3.6e-64 248.4 160 74.4
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 8.0e-64 247.3 160 72.5
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.0e-64 247.3 138 85.5
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 2.3e-63 245.7 160 71.2
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 2.3e-63 245.7 160 73.1
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 3.1e-63 245.4 154 74.0
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 6.8e-63 244.2 160 71.9
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 6.8e-63 244.2 160 71.2
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 8.9e-63 243.8 154 74.7
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 1.2e-62 243.4 158 74.1
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 1.2e-62 243.4 158 74.1
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.2e-62 243.4 160 71.2
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-62 242.7 161 72.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 2.0e-62 242.7 161 72.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-62 242.7 161 72.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-62 242.7 161 72.0
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 2.0e-62 242.7 161 72.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 2.6e-62 242.3 156 72.4
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 9.8e-62 240.4 156 71.8
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.3e-61 240.0 156 71.8
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.3e-61 240.0 156 71.8
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.3e-61 240.0 156 71.8
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 2.2e-61 239.2 156 71.2
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 2.2e-61 239.2 157 72.6
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 8.3e-61 237.3 154 73.4
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 3.2e-60 235.3 154 70.1
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 7.8e-59 230.7 143 74.8
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 1.3e-58 229.9 144 75.7
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 5.6e-57 224.6 154 68.2
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 7.3e-57 224.2 248 50.4
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 1.6e-56 223.0 135 77.0
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 4.7e-56 221.5 125 82.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 6.8e-55 217.6 161 65.8
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 9.9e-54 213.8 123 83.7
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 4.9e-53 211.5 162 62.3
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 6.4e-53 211.1 146 65.1
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 8.3e-53 210.7 146 65.8
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 2.1e-51 206.1 207 50.7
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 5.6e-49 198.0 301 40.2
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 2.1e-48 196.1 187 54.0
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 5.2e-47 191.4 112 76.8
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 2.6e-46 189.1 109 79.8
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 7.6e-46 187.6 154 57.1
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 3.9e-42 175.3 140 63.6
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.5e-38 163.3 98 81.6
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 2.4e-36 156.0 113 68.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 3.0e-34 149.1 101 71.3
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 49.4
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 9.6e-33 144.1 133 54.9
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 2.0e-30 136.3 149 47.7
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.4e-30 135.6 149 47.7
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 3.2e-28 129.0 132 50.0
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 3.5e-27 125.6 157 40.1
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 7.9e-27 124.4 77 74.0
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 8.7e-26 120.9 146 50.7
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.9e-25 119.8 138 42.8
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 2.4e-23 112.8 143 41.3
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-22 109.4 67 74.6
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 2.6e-22 109.4 67 74.6
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 3.4e-22 109.0 76 68.4
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 5.8e-22 108.2 65 75.4
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 7.6e-22 107.8 65 75.4
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 1.7e-21 106.7 138 40.6
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.1e-20 104.0 64 75.0
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-19 100.1 64 71.9
BcaC04g22765 Brassica carinata HOM05D004743 ORTHO05D005698 4.6e-19 98.6 78 64.1
C02p59940 Brassica napus HOM05D004743 ORTHO05D005698 1.0e-18 97.4 101 55.4
PSO063G6118 Papaver somniferum HOM05D004743 ORTHO05D005698 4.6e-11 72.0 146 36.3
arahy.Tifrunner.gnm1.ann1.1ZE97X Arachis hypogaea HOM05D004743 ORTHO05D005698 7.4e-09 64.7 40 72.5
arahy.Tifrunner.gnm1.ann1.JW2HXV Arachis hypogaea HOM05D004743 ORTHO05D005698 2.2e-08 63.2 40 70.0
TPR.G284 Trifolium pratense HOM05D004743 ORTHO05D005698 4.5e-06 55.5 45 60.0


User provided reference genes

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