Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 1.7e-60 235.7 113 100.0
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.7e-55 219.2 114 93.9
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 6.5e-52 207.2 115 87.8
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.5e-51 206.1 114 87.7
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 2.1e-50 202.2 114 85.1
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 2.3e-49 198.7 113 82.3
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 5.2e-49 197.6 113 85.0
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 6.7e-49 197.2 106 86.8
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 5.7e-48 194.1 113 82.3
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 9.7e-48 193.4 106 85.8
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 2.8e-47 191.8 116 81.0
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 5.3e-46 187.6 106 83.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 5.3e-46 187.6 116 79.3
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 1.2e-45 186.4 109 82.6
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 4.5e-45 184.5 109 81.7
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 4.5e-45 184.5 114 78.9
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 5.9e-45 184.1 111 76.6
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 2.2e-44 182.2 114 79.8
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 2.2e-44 182.2 106 81.1
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 2.9e-44 181.8 104 80.8
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.5e-44 180.6 111 76.6
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 6.5e-44 180.6 111 76.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.1e-43 179.9 105 76.2
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 1.1e-43 179.9 113 76.1
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 1.1e-43 179.9 112 75.9
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 1.1e-43 179.9 104 80.8
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 2.5e-43 178.7 97 85.6
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.5e-43 177.6 104 79.8
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 5.5e-43 177.6 111 73.0
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 1.2e-42 176.4 102 80.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 1.2e-42 176.4 102 80.4
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 2.1e-42 175.6 112 72.3
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 2.1e-42 175.6 115 75.7
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 2.7e-42 175.3 102 80.4
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.7e-42 175.3 111 71.2
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 6.1e-42 174.1 111 76.6
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 6.1e-42 174.1 101 83.2
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 8.0e-42 173.7 111 73.9
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 1.0e-41 173.3 110 74.5
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 1.4e-41 172.9 112 68.8
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 1.8e-41 172.6 102 73.5
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.3e-41 172.2 115 71.3
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.3e-41 172.2 105 73.3
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 3.0e-41 171.8 111 69.4
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 3.0e-41 171.8 112 71.4
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 4.0e-41 171.4 112 74.1
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 4.0e-41 171.4 102 78.4
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 5.2e-41 171.0 106 75.5
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 5.2e-41 171.0 102 78.4
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 5.2e-41 171.0 109 75.2
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 1.5e-40 169.5 102 77.5
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 1.5e-40 169.5 110 74.5
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 3.4e-40 168.3 97 82.5
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 4.4e-40 167.9 111 73.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 4.4e-40 167.9 95 82.1
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 4.4e-40 167.9 112 68.8
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 7.5e-40 167.2 102 74.5
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.5e-40 167.2 113 74.3
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 7.5e-40 167.2 109 71.6
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 9.8e-40 166.8 112 68.8
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.3e-39 166.4 113 70.8
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.2e-39 165.6 100 81.0
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 2.2e-39 165.6 103 74.8
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 2.8e-39 165.2 102 71.6
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 2.8e-39 165.2 102 76.5
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 3.7e-39 164.9 111 73.0
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.7e-39 164.9 113 69.9
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 3.7e-39 164.9 113 69.9
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 4.8e-39 164.5 99 72.7
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 4.8e-39 164.5 110 72.7
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 6.3e-39 164.1 113 67.3
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 6.3e-39 164.1 99 74.7
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 8.3e-39 163.7 106 71.7
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.1e-38 163.3 100 75.0
SHI26332 Sapria himalayana HOM05D004651 ORTHO05D005761 1.4e-38 162.9 111 71.2
HanXRQChr13g0391011 Helianthus annuus HOM05D004651 ORTHO05D005761 1.8e-38 162.5 105 68.6
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 5.4e-38 161.0 112 69.6
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 9.1e-38 160.2 102 71.6
Os09g0487500 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 1.2e-37 159.8 112 68.8
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 1.2e-37 159.8 108 71.3
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.6e-37 159.5 111 69.4
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 1.6e-37 159.5 112 68.8
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 1.6e-37 159.5 112 68.8
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.6e-37 159.5 110 70.9
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 2.0e-37 159.1 104 70.2
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 2.0e-37 159.1 110 70.0
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 2.0e-37 159.1 102 69.6
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.7e-37 158.7 109 67.9
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 3.5e-37 158.3 100 77.0
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 3.5e-37 158.3 110 70.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.5e-37 158.3 111 69.4
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 4.5e-37 157.9 107 69.2
TPR.G25632 Trifolium pratense HOM05D004651 ORTHO05D005761 4.5e-37 157.9 86 83.7
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 5.9e-37 157.5 108 70.4
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 1.3e-36 156.4 107 70.1
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 1.3e-36 156.4 109 69.7
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 1.3e-36 156.4 111 68.5
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.3e-36 156.4 107 71.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 1.3e-36 156.4 107 71.0
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 1.7e-36 156.0 102 74.5
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 1.7e-36 156.0 102 74.5
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 1.7e-36 156.0 102 74.5
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.7e-36 156.0 100 72.0
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 2.2e-36 155.6 100 74.0
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 2.9e-36 155.2 109 68.8
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 3.8e-36 154.8 107 71.0
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 3.8e-36 154.8 107 71.0
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.8e-36 154.8 103 72.8
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.8e-36 154.8 103 72.8
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.8e-36 154.8 103 72.8
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.8e-36 154.8 107 71.0
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 3.8e-36 154.8 110 67.3
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 5.0e-36 154.5 103 72.8
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 6.5e-36 154.1 103 72.8
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 6.5e-36 154.1 103 72.8
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 6.5e-36 154.1 103 72.8
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 6.5e-36 154.1 111 69.4
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 6.5e-36 154.1 97 72.2
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-36 153.7 113 62.8
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 8.5e-36 153.7 113 62.8
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 8.5e-36 153.7 107 71.0
Gohir.A11G313700 Gossypium hirsutum HOM05D004651 ORTHO05D005761 8.5e-36 153.7 111 69.4
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 8.5e-36 153.7 110 66.4
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 8.5e-36 153.7 96 71.9
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 8.5e-36 153.7 108 70.4
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.1e-35 153.3 112 65.2
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 1.1e-35 153.3 99 73.7
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.5e-35 152.9 100 72.0
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 1.9e-35 152.5 106 66.0
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 1.9e-35 152.5 99 71.7
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 3.2e-35 151.8 106 69.8
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 4.2e-35 151.4 111 67.6
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 7.2e-35 150.6 100 71.0
CAN.G358.117 Capsicum annuum HOM05D004651 ORTHO05D005761 1.8e-33 146.0 94 73.4
Os08g0505001 Oryza sativa ssp. japonica HOM05D004651 ORTHO05D005761 2.3e-33 145.6 104 65.4
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 5.2e-33 144.4 108 64.8
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 6.8e-33 144.1 99 70.7
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 7.5e-32 140.6 82 78.0
ATR0605G299 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.1e-30 136.7 117 57.3
ATR0605G353 Amborella trichopoda HOM05D004651 ORTHO05D005761 1.2e-29 133.3 114 55.3
CSS0043471 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 2.9e-28 128.6 99 62.6
SEGI_06557 Sequoiadendron giganteum HOM05D004651 ORTHO05D005761 9.5e-27 123.6 99 60.6
Mapoly0006s0067 Marchantia polymorpha HOM05D004651 ORTHO05D005761 3.0e-25 118.6 105 53.3
C03p28150 Brassica napus HOM05D004651 ORTHO05D005761 1.5e-24 116.3 59 89.8
RcHm_v2.0_Chr5g0057691 Rosa chinensis HOM05D004651 ORTHO05D005761 3.7e-23 111.7 79 68.4
Pp3c3_16790 Physcomitrium patens HOM05D004651 ORTHO05D005761 4.1e-22 108.2 100 53.0
AagrBONN_evm.TU.Sc2ySwM_362.1672 Anthoceros agrestis HOM05D004651 ORTHO05D005761 9.2e-22 107.1 83 61.4
Rhsim10G0114900 Rhododendron simsii HOM05D004651 ORTHO05D005761 1.9e-19 99.4 61 78.7
CBR_g8350 Chara braunii HOM05D004651 ORTHO05D005761 7.3e-19 97.4 82 56.1
Oeu038276.1 Olea europaea HOM05D004651 ORTHO05D005761 8.0e-18 94.0 55 78.2
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.9e-15 84.7 67 56.7
SMO203G0043 Selaginella moellendorffii HOM05D004651 ORTHO05D005761 4.9e-15 84.7 73 50.7
BcaB06g26137 Brassica carinata HOM05D004651 ORTHO05D005761 8.3e-15 84.0 66 63.6
MCO03G385 Micromonas commoda HOM05D004651 ORTHO05D005761 9.5e-11 70.5 82 45.1
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 8.9e-09 63.9 50 60.0
Aa31LG3G1100 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-08 63.2 103 40.8
SGA_v2.0_scaffold18G08230 Striga asiatica HOM05D004651 ORTHO05D401477 9.9e-08 60.5 42 69.0


User provided reference genes

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