Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G050100 Populus trichocarpa HOM05D004316 ORTHO05D005149 6.1e-270 933.7 522 100.0
Potri.016G056300 Populus trichocarpa HOM05D004316 ORTHO05D005149 3.8e-211 738.4 526 78.1
Sabra16G0058800 Salix brachista HOM05D004316 ORTHO05D005149 8.4e-211 737.3 527 77.2
Sabra06G0035000 Salix brachista HOM05D004316 ORTHO05D005149 1.2e-180 637.1 356 92.1
Manes.09G020900 Manihot esculenta HOM05D004316 ORTHO05D005149 9.4e-162 574.3 537 63.3
Thecc.05G152800 Theobroma cacao HOM05D004316 ORTHO05D005149 1.2e-153 547.4 515 61.2
Duzib128G1660 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-148 530.4 528 58.3
Duzib093G1448 Durio zibethinus HOM05D004316 ORTHO05D005149 1.0e-144 517.7 532 57.9
COL.COLO4_28298 Corchorus olitorius HOM05D004316 ORTHO05D005149 6.7e-144 515.0 522 57.3
Duzib152G0001 Durio zibethinus HOM05D004316 ORTHO05D005149 1.6e-140 503.8 522 56.9
Atru.chr1.1110 Acer truncatum HOM05D004316 ORTHO05D005149 1.3e-139 500.7 529 60.3
Duzib106G1406 Durio zibethinus HOM05D004316 ORTHO05D005149 2.2e-139 500.0 519 56.6
Gohir.A01G131000 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.1e-138 497.7 512 59.0
Cfa016810 Carpinus fangiana HOM05D004316 ORTHO05D005149 1.9e-138 496.9 536 59.3
QL07p000671 Quercus lobata HOM05D004316 ORTHO05D005149 5.5e-138 495.4 513 58.7
CiPaw.09G038700 Carya illinoinensis HOM05D004316 ORTHO05D005149 7.2e-138 495.0 553 56.6
Ciclev10004677m.g Citrus clementina HOM05D004316 ORTHO05D005149 1.6e-137 493.8 559 58.1
TWI74G1076 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 3.6e-137 492.7 523 59.5
Manes.08G051300 Manihot esculenta HOM05D004316 ORTHO05D005149 6.1e-137 491.9 518 57.7
Gohir.D01G120400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 1.0e-136 491.1 516 58.3
Haze_19850 Corylus avellana HOM05D004316 ORTHO05D005149 9.8e-135 484.6 543 58.4
Gorai.002G147000 Gossypium raimondii HOM05D004316 ORTHO05D005149 9.8e-135 484.6 518 57.9
MD12G1074600 Malus domestica HOM05D004316 ORTHO05D005149 1.2e-132 477.6 536 58.8
CiPaw.10G033700 Carya illinoinensis HOM05D004316 ORTHO05D005149 2.3e-131 473.4 530 57.0
Prupe.7G058900 Prunus persica HOM05D004316 ORTHO05D005149 4.2e-130 469.2 549 56.5
CSS0028183 Camellia sinensis var. sinensis HOM05D004316 ORTHO05D005149 2.0e-127 460.3 529 56.3
FAN05G0825 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.3e-123 447.6 556 55.0
PGR004G2076 Punica granatum HOM05D004316 ORTHO05D005149 6.6e-123 445.3 523 55.4
RcHm_v2.0_Chr3g0482601 Rosa chinensis HOM05D004316 ORTHO05D005149 6.6e-123 445.3 551 53.5
ClCG04G000170 Citrullus lanatus HOM05D004316 ORTHO05D005149 1.1e-122 444.5 534 50.7
Cpa.g.sc33.204 Carica papaya HOM05D004316 ORTHO05D005149 9.5e-122 441.4 460 61.1
Dinv12489 Davidia involucrata HOM05D004316 ORTHO05D005149 1.6e-121 440.7 503 57.1
Gohir.A11G312700 Gossypium hirsutum HOM05D004316 ORTHO05D005149 3.1e-120 436.4 505 52.5
Oeu033010.1 Olea europaea HOM05D004316 ORTHO05D005149 4.0e-120 436.0 531 51.0
CsaV3_4G011650 Cucumis sativus L. HOM05D004316 ORTHO05D005149 1.5e-119 434.1 535 49.7
Gohir.D11G329400 Gossypium hirsutum HOM05D004316 ORTHO05D005149 2.6e-119 433.3 509 52.1
FAN02G3785 Fragaria x ananassa HOM05D004316 ORTHO05D005149 4.4e-119 432.6 550 52.5
MD14G1072700 Malus domestica HOM05D004316 ORTHO05D005149 5.8e-119 432.2 531 58.0
Oeu023579.1 Olea europaea HOM05D004316 ORTHO05D005149 9.8e-119 431.4 532 51.5
Sed0026358 Sechium edule HOM05D004316 ORTHO05D005149 1.3e-118 431.0 532 48.7
Gorai.007G360600 Gossypium raimondii HOM05D004316 ORTHO05D005149 1.7e-118 430.6 511 50.9
TAR633G0189 Trochodendron aralioides HOM05D004316 ORTHO05D005149 1.7e-118 430.6 473 53.9
CANSAT80G0327 Cannabis sativa HOM05D004316 ORTHO05D005149 3.7e-118 429.5 545 53.4
Nn2g15213 Nelumbo nucifera HOM05D004316 ORTHO05D005149 3.7e-118 429.5 559 49.2
Glyma.02G184700 Glycine max HOM05D004316 ORTHO05D005149 6.4e-118 428.7 505 51.9
Nn7g36300 Nelumbo nucifera HOM05D004316 ORTHO05D005149 1.1e-117 427.9 538 52.8
TAR623G0492 Trochodendron aralioides HOM05D004316 ORTHO05D005149 7.0e-117 425.2 533 52.2
MELO3C023147.2 Cucumis melo HOM05D004316 ORTHO05D005149 2.0e-116 423.7 529 52.6
THA.LOC104802092 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 6.0e-116 422.2 517 49.1
FvH4_6g23940 Fragaria vesca HOM05D004316 ORTHO05D005149 6.6e-115 418.7 527 53.5
FAN14G3684 Fragaria x ananassa HOM05D004316 ORTHO05D005149 1.5e-114 417.5 527 53.5
FAN09G3682 Fragaria x ananassa HOM05D004316 ORTHO05D005149 7.3e-114 415.2 525 52.2
arahy.Tifrunner.gnm1.ann1.WY7AF9 Arachis hypogaea HOM05D004316 ORTHO05D005149 6.2e-113 412.1 463 52.7
Lju124C42T7 Lonicera japonica HOM05D004316 ORTHO05D005149 2.0e-111 407.1 528 51.1
TWI53G1538 Tripterygium wilfordii HOM05D004316 ORTHO05D005149 2.0e-111 407.1 356 64.0
arahy.Tifrunner.gnm1.ann1.7DG8CI Arachis hypogaea HOM05D004316 ORTHO05D005149 2.9e-110 403.3 462 53.0
MSTRG.19858 Avicennia marina HOM05D004316 ORTHO05D005149 3.2e-109 399.8 531 50.1
Thhalv10006507m.g Eutrema salsugineum HOM05D004316 ORTHO05D005149 3.2e-109 399.8 530 50.2
DCAR_013604 Daucus carota HOM05D004316 ORTHO05D005149 3.5e-108 396.4 514 47.9
Cc06_g17600 Coffea canephora HOM05D004316 ORTHO05D005149 6.6e-107 392.1 480 53.8
Aa31LG10G12240 Aethionema arabicum HOM05D004316 ORTHO05D005149 4.3e-106 389.4 521 45.7
THA.LOC104824440 Tarenaya hassleriana HOM05D004316 ORTHO05D005149 2.8e-105 386.7 516 48.1
Lsat_1_v5_gn_9_29201 Lactuca sativa HOM05D004316 ORTHO05D005149 2.3e-104 383.6 515 46.8
Sp5g05200 Schrenkiella parvula HOM05D004316 ORTHO05D005149 2.9e-102 376.7 533 47.5
Lalb_Chr20g0110531 Lupinus albus HOM05D004316 ORTHO05D005149 4.9e-102 375.9 468 50.2
Lalb_Chr01g0017331 Lupinus albus HOM05D004316 ORTHO05D005149 1.4e-101 374.4 511 45.6
AT3G57400 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 2.4e-101 373.6 468 48.9
Dinv39612 Davidia involucrata HOM05D004316 ORTHO05D005149 4.1e-101 372.9 454 50.7
Migut.J01754 Erythranthe guttata HOM05D004316 ORTHO05D005149 4.1e-101 372.9 527 50.7
AL5G38930 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 5.4e-101 372.5 538 46.7
BcaB02g07608 Brassica carinata HOM05D004316 ORTHO05D005149 5.4e-101 372.5 535 45.2
Peaxi162Scf00130g00012 Petunia axillaris HOM05D004316 ORTHO05D005149 2.1e-100 370.5 465 50.5
SalBow6G3548 Salvia bowleyana HOM05D004316 ORTHO05D005149 5.1e-99 365.9 518 46.5
Lalb_Chr25g0287141 Lupinus albus HOM05D004316 ORTHO05D005149 1.9e-98 364.0 538 45.2
PSO384G0452 Papaver somniferum HOM05D004316 ORTHO05D005149 4.3e-98 362.8 465 47.1
VMungo0720G0980 Vigna mungo HOM05D004316 ORTHO05D005149 7.3e-98 362.1 505 47.1
MSTRG.6426 Avicennia marina HOM05D004316 ORTHO05D005149 2.1e-97 360.5 533 45.0
CARHR167600 Cardamine hirsuta HOM05D004316 ORTHO05D005149 2.1e-97 360.5 527 46.9
PGSC0003DMG400027281 Solanum tuberosum HOM05D004316 ORTHO05D005149 2.1e-97 360.5 466 48.7
PSO339G4967 Papaver somniferum HOM05D004316 ORTHO05D005149 6.2e-97 359.0 543 46.8
Eucgr.A02343 Eucalyptus grandis HOM05D004316 ORTHO05D005149 2.4e-96 357.1 493 52.7
BcaC02g09937 Brassica carinata HOM05D004316 ORTHO05D005149 2.0e-95 354.0 534 45.3
C04p35000 Brassica napus HOM05D004316 ORTHO05D005149 2.0e-95 354.0 534 45.3
BolC4t25057H Brassica oleracea HOM05D004316 ORTHO05D005149 2.0e-95 354.0 534 45.3
Lsat_1_v5_gn_8_81220 Lactuca sativa HOM05D004316 ORTHO05D005149 6.4e-94 349.0 519 43.5
HanXRQChr10g0296681 Helianthus annuus HOM05D004316 ORTHO05D005149 1.9e-93 347.4 512 43.4
Lsat_1_v5_gn_5_161320 Lactuca sativa HOM05D004316 ORTHO05D005149 1.9e-93 347.4 458 46.5
Sopen04g007890 Solanum pennellii HOM05D004316 ORTHO05D005149 7.1e-93 345.5 446 48.4
Rhsim03G0025000 Rhododendron simsii HOM05D004316 ORTHO05D005149 7.8e-92 342.0 356 52.5
Glyma.03G136300 Glycine max HOM05D004316 ORTHO05D005149 1.3e-91 341.3 455 46.2
Nitab4.5_0013624g0010 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.3e-91 341.3 370 52.2
BcaC08g44838 Brassica carinata HOM05D004316 ORTHO05D005149 3.9e-91 339.7 467 46.3
C06p24450 Brassica napus HOM05D004316 ORTHO05D005149 3.9e-91 339.7 467 46.3
BolC6t37592H Brassica oleracea HOM05D004316 ORTHO05D005149 3.9e-91 339.7 467 46.3
Ah.13g076490 Amaranthus hybridus HOM05D004316 ORTHO05D005149 5.1e-91 339.3 477 45.3
Nitab4.5_0000586g0080 Nicotiana tabacum HOM05D004316 ORTHO05D005149 1.5e-90 337.8 364 51.9
Lj1g0001621 Lotus japonicus HOM05D004316 ORTHO05D005149 1.9e-90 337.4 512 43.8
Carub.0005s2424 Capsella rubella HOM05D004316 ORTHO05D005149 3.3e-90 336.7 475 45.5
EL10Ac3g07095 Beta vulgaris HOM05D004316 ORTHO05D005149 4.3e-90 336.3 478 45.0
SGA_v2.0_scaffold66G22353 Striga asiatica HOM05D004316 ORTHO05D005149 4.3e-90 336.3 373 52.5
BcaB02g08317 Brassica carinata HOM05D004316 ORTHO05D005149 9.6e-90 335.1 371 52.8
A04p03150 Brassica napus HOM05D004316 ORTHO05D005149 2.8e-89 333.6 430 46.5
SGA_v2.0_scaffold105G30405 Striga asiatica HOM05D004316 ORTHO05D005149 2.8e-89 333.6 372 52.4
A07p23380 Brassica napus HOM05D004316 ORTHO05D005149 3.6e-89 333.2 432 47.5
Aqoxy1G00235 Aquilegia oxysepala HOM05D004316 ORTHO05D005149 4.8e-89 332.8 453 46.6
BolC8t50893H Brassica oleracea HOM05D004316 ORTHO05D005149 6.2e-89 332.4 533 43.2
C08p32820 Brassica napus HOM05D004316 ORTHO05D005149 9.9e-87 325.1 533 42.8
BraA07t30003Z Brassica rapa HOM05D004316 ORTHO05D005149 9.9e-87 325.1 430 46.5
Glyma.19G138200 Glycine max HOM05D004316 ORTHO05D005149 2.9e-86 323.6 456 44.3
A09p50290 Brassica napus HOM05D004316 ORTHO05D005149 2.7e-84 317.0 533 40.9
BraA09t40480Z Brassica rapa HOM05D004316 ORTHO05D005149 2.7e-84 317.0 533 40.9
HanXRQChr13g0395921 Helianthus annuus HOM05D004316 ORTHO05D005149 1.1e-82 311.6 517 41.6
VMungo1383G1866 Vigna mungo HOM05D004316 ORTHO05D005149 7.3e-82 308.9 369 48.8
Medtr7g091450 Medicago truncatula HOM05D004316 ORTHO05D005149 1.3e-81 308.1 366 50.0
BcaC07g40393 Brassica carinata HOM05D004316 ORTHO05D005149 4.8e-81 306.2 534 41.0
Sc19g0006560 Simmondsia chinensis HOM05D004316 ORTHO05D005149 1.1e-80 305.1 548 37.4
Psat3g072520 Pisum sativum HOM05D004316 ORTHO05D005149 1.8e-80 304.3 349 49.9
AUR62026044 Chenopodium quinoa HOM05D004316 ORTHO05D005149 6.9e-80 302.4 430 46.3
SGA_v2.0_scaffold5252G54614 Striga asiatica HOM05D004316 ORTHO05D005149 1.2e-79 301.6 312 53.8
AUR62024455 Chenopodium quinoa HOM05D004316 ORTHO05D005149 2.0e-79 300.8 386 48.2
Nitab4.5_0000082g0160 Nicotiana tabacum HOM05D004316 ORTHO05D005149 3.4e-79 300.1 366 49.2
vmacro07846 Vaccinium macrocarpon HOM05D004316 ORTHO05D005149 4.5e-79 299.7 536 42.7
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.9e-78 297.0 405 46.4
ECA248G0930 Erigeron canadensis HOM05D004316 ORTHO05D005149 8.4e-78 295.4 397 43.3
unitig_22.g6044 Utricularia gibba HOM05D004316 ORTHO05D005149 2.1e-76 290.8 509 40.5
PGSC0003DMG400008166 Solanum tuberosum HOM05D004316 ORTHO05D005149 1.3e-75 288.1 437 42.3
AT5G52500 Arabidopsis thaliana HOM05D004316 ORTHO05D005149 1.1e-74 285.0 400 44.2
Phvul.001G131600 Phaseolus vulgaris HOM05D004316 ORTHO05D005149 1.9e-74 284.3 336 48.8
Ca_08453_v3 Cicer arietinum L. HOM05D004316 ORTHO05D005149 8.1e-73 278.9 331 48.9
HanXRQChr05g0131861 Helianthus annuus HOM05D004316 ORTHO05D005149 5.5e-69 266.2 526 38.2
TPR.G3718 Trifolium pratense HOM05D004316 ORTHO05D005149 7.9e-68 262.3 342 46.8
ECA247G0299 Erigeron canadensis HOM05D004316 ORTHO05D005149 9.6e-66 255.4 313 49.5
Solyc10g079390.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 8.2e-65 252.3 382 40.3
Solyc04g015850.3 Solanum lycopersicum HOM05D004316 ORTHO05D005149 1.8e-64 251.1 293 50.9
Actinidia39222 Actinidia chinensis HOM05D004316 ORTHO05D005149 4.0e-64 250.0 216 62.5
CDE08G1472 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 1.2e-63 248.4 387 40.8
CDE09G0122 Ceratophyllum demersum HOM05D004316 ORTHO05D005149 3.4e-63 246.9 390 40.0
unitig_8.g3507 Utricularia gibba HOM05D004316 ORTHO05D005149 8.7e-59 232.3 297 44.8
SEGI_13236 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.9e-58 231.1 544 34.9
SEGI_35991 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.9e-58 231.1 544 34.9
ATR0782G190 Amborella trichopoda HOM05D004316 ORTHO05D005149 3.6e-52 210.3 490 33.3
AL8G26960 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 1.0e-38 165.6 184 51.1
AL205U10010 Arabidopsis lyrata HOM05D004316 ORTHO05D005149 2.9e-38 164.1 184 51.6
Pp3c13_6400 Physcomitrium patens HOM05D004316 ORTHO05D005149 9.4e-37 159.1 336 36.6
Pp3c3_2450 Physcomitrium patens HOM05D004316 ORTHO05D005149 4.7e-36 156.8 405 30.4
Pp3c20_13470 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.0e-35 154.1 420 30.2
AagrBONN_evm.TU.Sc2ySwM_362.2535 Anthoceros agrestis HOM05D004316 ORTHO05D005149 1.7e-33 148.3 589 26.7
Pp3c8_14130 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.7e-33 148.3 518 27.0
Pp3c23_16170 Physcomitrium patens HOM05D004316 ORTHO05D005149 3.7e-33 147.1 335 29.6
Mapoly0109s0039 Marchantia polymorpha HOM05D004316 ORTHO05D005149 4.1e-32 143.7 311 32.8
Pp3c5_24720 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.6e-31 141.7 555 25.6
Mapoly0052s0060 Marchantia polymorpha HOM05D004316 ORTHO05D005149 5.0e-30 136.7 336 32.1
SMO201G0108 Selaginella moellendorffii HOM05D004316 ORTHO05D005149 3.2e-29 134.0 568 25.4
Actinidia39221 Actinidia chinensis HOM05D004316 ORTHO05D005149 1.2e-28 132.1 174 47.7
GSVIVG01033262001 Vitis vinifera HOM05D004316 ORTHO05D005149 1.2e-26 125.6 121 53.7
Pp3c6_3920 Physcomitrium patens HOM05D004316 ORTHO05D005149 1.3e-25 122.1 263 33.8
SEGI_09580 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 1.8e-19 101.7 222 34.7
SEGI_40609 Sequoiadendron giganteum HOM05D004316 ORTHO05D005149 3.0e-19 100.9 84 61.9
EL10Ac6g14633 Beta vulgaris HOM05D004316 ORTHO05D005149 6.8e-19 99.8 149 46.3
Nn1g05572 Nelumbo nucifera HOM05D004316 ORTHO05D022954 8.8e-19 99.4 161 39.8
BcaC02g09938 Brassica carinata HOM05D004316 ORTHO05D005149 1.0e-11 75.9 66 59.1
Solyc10g017860.1 Solanum lycopersicum HOM05D004316 ORTHO05D005149 3.2e-08 64.3 56 48.2


User provided reference genes

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