Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G047000 Populus trichocarpa HOM05D005608 ORTHO05D007543 4.3e-169 597.8 285 100.0
Sabra06G0032700 Salix brachista HOM05D005608 ORTHO05D007543 7.1e-164 580.5 285 97.2
QL07p003736 Quercus lobata HOM05D005608 ORTHO05D007543 2.3e-154 548.9 284 89.4
Ciclev10005572m.g Citrus clementina HOM05D005608 ORTHO05D007543 4.8e-152 541.2 285 88.8
Duzib106G2070 Durio zibethinus HOM05D005608 ORTHO05D007543 1.1e-151 540.0 285 88.4
Thecc.05G148100 Theobroma cacao HOM05D005608 ORTHO05D007543 4.1e-151 538.1 285 87.0
CiPaw.09G040300 Carya illinoinensis HOM05D005608 ORTHO05D007543 2.6e-150 535.4 284 88.0
Manes.08G052000 Manihot esculenta HOM05D005608 ORTHO05D007543 3.4e-150 535.0 285 87.0
Gohir.A01G193800 Gossypium hirsutum HOM05D005608 ORTHO05D007543 1.7e-149 532.7 285 86.7
Atru.chr1.1230 Acer truncatum HOM05D005608 ORTHO05D007543 2.5e-148 528.9 285 86.0
Gohir.D01G184100 Gossypium hirsutum HOM05D005608 ORTHO05D007543 3.2e-148 528.5 285 87.0
Gorai.002G227600 Gossypium raimondii HOM05D005608 ORTHO05D007543 3.2e-148 528.5 285 87.0
GSVIVG01033232001 Vitis vinifera HOM05D005608 ORTHO05D007543 4.2e-148 528.1 284 85.2
CSS0026365 Camellia sinensis var. sinensis HOM05D005608 ORTHO05D007543 1.6e-147 526.2 285 84.9
MELO3C026333.2 Cucumis melo HOM05D005608 ORTHO05D007543 2.1e-147 525.8 284 83.5
Prupe.7G053400 Prunus persica HOM05D005608 ORTHO05D007543 2.7e-147 525.4 286 85.7
Phvul.007G250500 Phaseolus vulgaris HOM05D005608 ORTHO05D007543 3.6e-147 525.0 284 84.9
TAR369G0715 Trochodendron aralioides HOM05D005608 ORTHO05D007543 3.6e-147 525.0 283 86.6
Hma1.2p1_0110F.1_g052840 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.9
Hma1.2p1_1997F.1_g310445 Hydrangea macrophylla HOM05D005608 ORTHO05D007543 4.7e-147 524.6 285 84.9
EL10Ac3g07137 Beta vulgaris HOM05D005608 ORTHO05D007543 7.9e-147 523.9 285 85.6
MD14G1077300 Malus domestica HOM05D005608 ORTHO05D007543 7.9e-147 523.9 284 83.8
Eucgr.K02019 Eucalyptus grandis HOM05D005608 ORTHO05D007543 1.0e-146 523.5 287 86.4
Nitab4.5_0001618g0150 Nicotiana tabacum HOM05D005608 ORTHO05D007543 1.8e-146 522.7 285 84.6
Oeu017928.1 Olea europaea HOM05D005608 ORTHO05D007543 1.8e-146 522.7 282 85.1
Sc19g0008540 Simmondsia chinensis HOM05D005608 ORTHO05D007543 2.3e-146 522.3 285 84.9
vmacro21968 Vaccinium macrocarpon HOM05D005608 ORTHO05D007543 2.3e-146 522.3 285 84.2
Actinidia39202 Actinidia chinensis HOM05D005608 ORTHO05D007543 3.0e-146 521.9 285 84.2
Haze_19791 Corylus avellana HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 85.6
Haze_19795 Corylus avellana HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 85.6
Sed0023334 Sechium edule HOM05D005608 ORTHO05D007543 3.0e-146 521.9 284 83.5
RcHm_v2.0_Chr3g0483631 Rosa chinensis HOM05D005608 ORTHO05D007543 3.9e-146 521.5 283 85.2
PGSC0003DMG401012699 Solanum tuberosum HOM05D005608 ORTHO05D007543 3.9e-146 521.5 285 84.2
CAN.G676.7 Capsicum annuum HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.2
PSO384G3225 Papaver somniferum HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.2
TWI77G0221 Tripterygium wilfordii HOM05D005608 ORTHO05D007543 5.1e-146 521.2 285 84.2
Cfa016779 Carpinus fangiana HOM05D005608 ORTHO05D007543 8.8e-146 520.4 284 85.6
PSO339G6269 Papaver somniferum HOM05D005608 ORTHO05D007543 8.8e-146 520.4 285 84.2
TAR369G0194 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.1e-145 520.0 283 85.9
TAR633G2234 Trochodendron aralioides HOM05D005608 ORTHO05D007543 1.1e-145 520.0 285 85.6
CsaV3_4G027510 Cucumis sativus L. HOM05D005608 ORTHO05D007543 2.6e-145 518.8 284 82.4
Lj5g0018305 Lotus japonicus HOM05D005608 ORTHO05D007543 3.3e-145 518.5 285 85.3
Lj1A1125T63 Lonicera japonica HOM05D005608 ORTHO05D007543 5.7e-145 517.7 288 84.7
Nitab4.5_0000826g0060 Nicotiana tabacum HOM05D005608 ORTHO05D007543 5.7e-145 517.7 285 84.2
Solyc04g016360.3 Solanum lycopersicum HOM05D005608 ORTHO05D007543 5.7e-145 517.7 285 84.2
Aqoxy2G00245 Aquilegia oxysepala HOM05D005608 ORTHO05D007543 2.2e-144 515.8 285 84.6
Lalb_Chr06g0173501 Lupinus albus HOM05D005608 ORTHO05D007543 2.2e-144 515.8 285 84.9
Rhsim03G0028900 Rhododendron simsii HOM05D005608 ORTHO05D007543 2.8e-144 515.4 289 84.4
Nn2g15128 Nelumbo nucifera HOM05D005608 ORTHO05D007543 4.8e-144 514.6 282 85.1
DCAR_013613 Daucus carota HOM05D005608 ORTHO05D007543 6.3e-144 514.2 283 82.7
Sopen04g008450 Solanum pennellii HOM05D005608 ORTHO05D007543 8.2e-144 513.8 285 83.2
MSTRG.26133 Avicennia marina HOM05D005608 ORTHO05D007543 1.4e-143 513.1 284 83.1
FAN02G1028 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.4e-143 513.1 284 83.8
FAN05G0975 Fragaria x ananassa HOM05D005608 ORTHO05D007543 1.8e-143 512.7 286 83.9
CANSAT80G2626 Cannabis sativa HOM05D005608 ORTHO05D007543 4.1e-143 511.5 285 82.8
Glyma.10G106900 Glycine max HOM05D005608 ORTHO05D007543 4.1e-143 511.5 283 83.0
SGA_v2.0_scaffold273G46432 Striga asiatica HOM05D005608 ORTHO05D007543 4.1e-143 511.5 273 85.7
Hund24681 Selenicereus undatus HOM05D005608 ORTHO05D007543 5.3e-143 511.1 285 82.8
Glyma.02G186700 Glycine max HOM05D005608 ORTHO05D007543 6.9e-143 510.8 284 82.7
FvH4_6g24520 Fragaria vesca HOM05D005608 ORTHO05D007543 9.1e-143 510.4 283 83.7
VMungo0720G2960 Vigna mungo HOM05D005608 ORTHO05D007543 1.5e-142 509.6 284 82.4
Cc06_g18100 Coffea canephora HOM05D005608 ORTHO05D007543 2.0e-142 509.2 284 83.1
MSTRG.19838 Avicennia marina HOM05D005608 ORTHO05D007543 2.6e-142 508.8 281 82.9
CANSAT80G0897 Cannabis sativa HOM05D005608 ORTHO05D007543 5.0e-141 504.6 290 81.4
SalBow6G4364 Salvia bowleyana HOM05D005608 ORTHO05D007543 5.0e-141 504.6 282 83.0
arahy.Tifrunner.gnm1.ann1.RCN63F Arachis hypogaea HOM05D005608 ORTHO05D007543 1.1e-140 503.4 283 83.4
FAN14G1555 Fragaria x ananassa HOM05D005608 ORTHO05D007543 4.2e-140 501.5 286 82.2
Aa31LG1G23580 Aethionema arabicum HOM05D005608 ORTHO05D007543 9.4e-140 500.4 286 81.8
AUR62026096 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.4e-138 496.5 302 78.1
Thhalv10017045m.g Eutrema salsugineum HOM05D005608 ORTHO05D007543 1.4e-138 496.5 285 80.7
HanXRQChr04g0125051 Helianthus annuus HOM05D005608 ORTHO05D007543 1.4e-138 496.5 281 82.2
Peaxi162Scf00130g00829 Petunia axillaris HOM05D005608 ORTHO05D007543 3.0e-138 495.4 285 80.7
THA.LOC104801987 Tarenaya hassleriana HOM05D005608 ORTHO05D007543 8.8e-138 493.8 284 79.9
Medtr4g008660 Medicago truncatula HOM05D005608 ORTHO05D007543 1.1e-137 493.4 279 82.4
CARHR136660 Cardamine hirsuta HOM05D005608 ORTHO05D007543 1.5e-137 493.0 285 81.4
TPR.G19657 Trifolium pratense HOM05D005608 ORTHO05D007543 2.6e-137 492.3 284 80.6
Migut.J01725 Erythranthe guttata HOM05D005608 ORTHO05D007543 4.4e-137 491.5 282 80.5
Medtr1g052175 Medicago truncatula HOM05D005608 ORTHO05D007543 4.4e-137 491.5 279 82.4
BcaNung04068 Brassica carinata HOM05D005608 ORTHO05D007543 5.7e-137 491.1 285 80.7
arahy.Tifrunner.gnm1.ann1.QZL5XH Arachis hypogaea HOM05D005608 ORTHO05D007543 1.7e-136 489.6 297 78.8
Sp4g23810 Schrenkiella parvula HOM05D005608 ORTHO05D007543 4.8e-136 488.0 285 79.3
AL4G39630 Arabidopsis lyrata HOM05D005608 ORTHO05D007543 1.8e-135 486.1 285 80.0
AT2G41530 Arabidopsis thaliana HOM05D005608 ORTHO05D007543 2.4e-135 485.7 280 81.4
CDE05G0378 Ceratophyllum demersum HOM05D005608 ORTHO05D007543 3.1e-135 485.3 281 78.3
Carub.0004s2382 Capsella rubella HOM05D005608 ORTHO05D007543 5.3e-135 484.6 285 79.6
Nitab4.5_0000636g0050 Nicotiana tabacum HOM05D005608 ORTHO05D007543 7.0e-135 484.2 285 80.4
Sed0008486 Sechium edule HOM05D005608 ORTHO05D007543 7.0e-135 484.2 284 77.5
HPP92_001434 Vanilla planifolia HOM05D005608 ORTHO05D007543 3.5e-134 481.9 280 78.2
BcaC01g05330 Brassica carinata HOM05D005608 ORTHO05D007543 4.5e-134 481.5 285 78.6
BcaB01g03463 Brassica carinata HOM05D005608 ORTHO05D007543 5.9e-134 481.1 285 78.2
Peaxi162Scf00130g00828 Petunia axillaris HOM05D005608 ORTHO05D007543 7.7e-134 480.7 285 79.6
A03p23310 Brassica napus HOM05D005608 ORTHO05D007543 1.3e-133 479.9 285 77.9
C03p27830 Brassica napus HOM05D005608 ORTHO05D007543 1.3e-133 479.9 285 78.6
BraA03t11549Z Brassica rapa HOM05D005608 ORTHO05D007543 1.3e-133 479.9 285 77.9
BolC3t15154H Brassica oleracea HOM05D005608 ORTHO05D007543 2.2e-133 479.2 285 78.2
Ca_12257_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 2.2e-133 479.2 278 80.2
BraA05t19229Z Brassica rapa HOM05D005608 ORTHO05D007543 2.9e-133 478.8 286 80.1
ClCG04G003700 Citrullus lanatus HOM05D005608 ORTHO05D007543 2.9e-133 478.8 284 78.2
ECA236G2378 Erigeron canadensis HOM05D005608 ORTHO05D007543 2.9e-133 478.8 270 81.9
A05p02350 Brassica napus HOM05D005608 ORTHO05D007543 3.8e-133 478.4 286 79.7
C04p02790 Brassica napus HOM05D005608 ORTHO05D007543 2.5e-132 475.7 286 79.4
BolC4t21919H Brassica oleracea HOM05D005608 ORTHO05D007543 2.5e-132 475.7 286 79.4
Ca_12243_v3 Cicer arietinum L. HOM05D005608 ORTHO05D007543 1.0e-130 470.3 282 78.0
ATR0721G011 Amborella trichopoda HOM05D005608 ORTHO05D007543 6.7e-130 467.6 275 77.5
SEGI_13354 Sequoiadendron giganteum HOM05D005608 ORTHO05D007543 1.2e-129 466.8 278 78.1
Lsat_1_v5_gn_8_82180 Lactuca sativa HOM05D005608 ORTHO05D007543 2.0e-129 466.1 329 68.4
Cpa.g.sc182.15 Carica papaya HOM05D005608 ORTHO05D007543 9.7e-129 463.8 246 86.6
Sed0024564 Sechium edule HOM05D005608 ORTHO05D007543 4.5e-126 454.9 284 73.2
Os01g0939700 Oryza sativa ssp. japonica HOM05D005608 ORTHO05D007543 2.5e-124 449.1 277 73.3
Eucgr.K01713 Eucalyptus grandis HOM05D005608 ORTHO05D007543 2.0e-121 439.5 275 76.0
unitig_21.g20519 Utricularia gibba HOM05D005608 ORTHO05D007543 1.7e-120 436.4 287 74.6
AUR62024510 Chenopodium quinoa HOM05D005608 ORTHO05D007543 1.6e-118 429.9 236 84.3
Pp3c11_8660 Physcomitrium patens HOM05D005608 ORTHO05D007543 2.5e-116 422.5 282 69.5
MBI19_g29889_MAGBIO Magnolia biondii HOM05D005608 ORTHO05D007543 8.9e-114 414.1 233 80.3
MD12G1082500 Malus domestica HOM05D005608 ORTHO05D007543 5.7e-113 411.4 225 85.3
Dinv39657 Davidia involucrata HOM05D005608 ORTHO05D007543 8.0e-107 391.0 196 92.3
SMO174G0027 Selaginella moellendorffii HOM05D005608 ORTHO05D007543 2.0e-105 386.3 278 66.2
Mapoly0020s0136 Marchantia polymorpha HOM05D005608 ORTHO05D007543 2.6e-105 386.0 279 65.2
CBR_g12387 Chara braunii HOM05D005608 ORTHO05D007543 5.8e-105 384.8 278 65.8
Zm00001eb363240 Zea mays HOM05D005608 ORTHO05D007543 1.1e-98 364.0 219 76.7
COL.COLO4_32782 Corchorus olitorius HOM05D005608 ORTHO05D007543 6.6e-93 344.7 273 63.7
Cre03.g158800 Chlamydomonas reinhardtii HOM05D005608 ORTHO05D007543 3.3e-92 342.4 282 58.5
SalBow6G3992 Salvia bowleyana HOM05D005608 ORTHO05D007543 5.8e-89 331.6 289 59.9
Psat6g091560 Pisum sativum HOM05D005608 ORTHO05D007543 3.4e-81 305.8 171 85.4
TPR.G19661 Trifolium pratense HOM05D005608 ORTHO05D007543 9.2e-79 297.7 167 83.2
Haze_27232 Corylus avellana HOM05D005608 ORTHO05D007543 2.4e-74 283.1 258 51.6
Haze_26706 Corylus avellana HOM05D005608 ORTHO05D007543 2.0e-65 253.4 277 45.1
MCO09G089 Micromonas commoda HOM05D000219 ORTHO05D000226 5.4e-63 245.4 276 47.1
PRCOL_00003320 Prasinoderma coloniale HOM05D000219 ORTHO05D000226 4.6e-62 242.3 283 47.0
Medtr0931s0010 Medicago truncatula HOM05D005608 ORTHO05D044358 2.1e-59 233.4 231 51.5
Medtr1g052165 Medicago truncatula HOM05D005608 ORTHO05D048895 1.3e-48 197.6 114 78.9
TPR.G23055 Trifolium pratense HOM05D005608 ORTHO05D048895 3.7e-43 179.5 103 77.7
Zm00001eb010250 Zea mays HOM05D005608 ORTHO05D007543 7.4e-20 102.1 78 62.8
Zm00001eb141600 Zea mays HOM05D005608 ORTHO05D007543 5.5e-15 85.9 61 65.6
SEGI_35043 Sequoiadendron giganteum HOM05D005608 ORTHO05D384886 6.1e-14 82.4 52 75.0
Pp3c1_10050 Physcomitrium patens HOM05D005608 ORTHO05D319324 3.4e-12 76.6 56 58.9
PSO765G0043 Papaver somniferum HOM05D005608 ORTHO05D302623 2.1e-06 57.4 47 61.7


User provided reference genes

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