Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G046700 Populus trichocarpa HOM05D007911 ORTHO05D009536 0.0e+00 1323.9 700 100.0
Sabra06G0032200 Salix brachista HOM05D007911 ORTHO05D009536 0.0e+00 1114.4 745 83.0
Potri.016G043300 Populus trichocarpa HOM05D007911 ORTHO05D009536 2.6e-276 955.3 779 70.1
Manes.08G052400 Manihot esculenta HOM05D007911 ORTHO05D009536 6.5e-110 402.5 772 39.0
Duzib093G1996 Durio zibethinus HOM05D007911 ORTHO05D009536 8.9e-91 339.0 779 36.3
Thecc.05G151800 Theobroma cacao HOM05D007911 ORTHO05D009536 5.8e-90 336.3 784 35.6
Haze_19798 Corylus avellana HOM05D007911 ORTHO05D009536 5.6e-85 319.7 713 37.4
Cfa016782 Carpinus fangiana HOM05D007911 ORTHO05D009536 7.1e-80 302.8 843 32.5
COL.COLO4_33204 Corchorus olitorius HOM05D007911 ORTHO05D009536 1.9e-77 294.7 803 33.9
CiPaw.09G040100 Carya illinoinensis HOM05D007911 ORTHO05D009536 6.8e-75 286.2 757 34.1
Gohir.A01G130811 Gossypium hirsutum HOM05D007911 ORTHO05D009536 9.6e-69 265.8 747 33.3
Gohir.D01G119650 Gossypium hirsutum HOM05D007911 ORTHO05D009536 2.8e-68 264.2 744 33.1
Gorai.002G146100 Gossypium raimondii HOM05D007911 ORTHO05D009536 1.2e-66 258.8 748 32.6
TWI53G0905 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 5.8e-66 256.5 719 32.1
Cpa.g.sc1210.2 Carica papaya HOM05D007911 ORTHO05D009536 2.4e-51 208.0 786 29.4
TWI77G0280 Tripterygium wilfordii HOM05D007911 ORTHO05D009536 6.9e-51 206.5 706 28.6
QL07p003623 Quercus lobata HOM05D007911 ORTHO05D009536 9.0e-51 206.1 1094 26.9
Prupe.7G054000 Prunus persica HOM05D007911 ORTHO05D009536 1.6e-47 195.3 404 36.4
Atru.chr12.1999 Acer truncatum HOM05D007911 ORTHO05D009536 8.7e-46 189.5 689 30.0
arahy.Tifrunner.gnm1.ann1.BL1IZ1 Arachis hypogaea HOM05D007911 ORTHO05D009536 3.4e-42 177.6 730 28.9
arahy.Tifrunner.gnm1.ann1.18RKPD Arachis hypogaea HOM05D007911 ORTHO05D009536 1.0e-41 176.0 736 28.9
RcHm_v2.0_Chr3g0483481 Rosa chinensis HOM05D020102 ORTHO05D009536 1.0e-38 166.0 434 34.1
Phvul.001G129400 Phaseolus vulgaris HOM05D007911 ORTHO05D009536 1.2e-34 152.5 710 28.2
CANSAT80G2434 Cannabis sativa HOM05D007911 ORTHO05D009536 2.0e-34 151.8 246 40.2
Actinidia09304 Actinidia chinensis HOM05D007911 ORTHO05D009536 1.0e-33 149.4 393 33.1
CANSAT80G1261 Cannabis sativa HOM05D007911 ORTHO05D009536 9.3e-32 142.9 281 36.3
Eucgr.A02312 Eucalyptus grandis HOM05D007911 ORTHO05D009536 1.6e-31 142.1 709 27.2
TAR636G2018 Trochodendron aralioides HOM05D007911 ORTHO05D009536 2.1e-31 141.7 238 38.7
VMungo1383G2470 Vigna mungo HOM05D007911 ORTHO05D009536 1.8e-30 138.7 713 27.8
Actinidia39204 Actinidia chinensis HOM05D007911 ORTHO05D009536 5.1e-30 137.1 393 30.5
Duzib106G0073 Durio zibethinus HOM05D007911 ORTHO05D009536 5.1e-30 137.1 153 52.3
Lj1g0009156 Lotus japonicus HOM05D007911 ORTHO05D009536 5.1e-30 137.1 738 27.8
Haze_19794 Corylus avellana HOM05D007911 ORTHO05D009536 6.7e-30 136.7 422 33.6
Atru.chr1.1239 Acer truncatum HOM05D007911 ORTHO05D009536 1.5e-29 135.6 121 59.5
Hma1.2p1_0005F.1_g004500 Hydrangea macrophylla HOM05D007911 ORTHO05D009536 1.7e-28 132.1 287 35.9
CSS0030068 Camellia sinensis var. sinensis HOM05D007911 ORTHO05D009536 3.7e-28 131.0 566 29.5
Ciclev10004930m.g Citrus clementina HOM05D007911 ORTHO05D044634 6.3e-28 130.2 397 31.7
Psat3g074440 Pisum sativum HOM05D007911 ORTHO05D009536 6.3e-28 130.2 137 48.2
Atru.chr1.1237 Acer truncatum HOM05D007911 ORTHO05D009536 5.3e-27 127.1 348 31.6
Glyma.03G133900 Glycine max HOM05D007911 ORTHO05D009536 1.5e-26 125.6 814 25.9
Ciclev10006879m.g Citrus clementina HOM05D007911 ORTHO05D009536 2.0e-26 125.2 113 53.1
FvH4_6g24470 Fragaria vesca HOM05D020102 ORTHO05D009536 4.5e-26 124.0 229 36.7
FAN14G4000 Fragaria x ananassa HOM05D020102 ORTHO05D009536 2.9e-25 121.3 229 35.8
arahy.Tifrunner.gnm1.ann1.XA9LH2 Arachis hypogaea HOM05D007911 ORTHO05D009536 1.9e-24 118.6 157 44.6
Nn2g15134 Nelumbo nucifera HOM05D007911 ORTHO05D009536 2.5e-24 118.2 198 38.9
Medtr7g091040 Medicago truncatula HOM05D007911 ORTHO05D009536 4.2e-24 117.5 138 43.5
TPR.G18258 Trifolium pratense HOM05D007911 ORTHO05D009536 4.2e-24 117.5 514 26.3
Ca_08429_v3 Cicer arietinum L. HOM05D007911 ORTHO05D009536 9.4e-24 116.3 342 29.8
FAN09G4584 Fragaria x ananassa HOM05D020102 ORTHO05D009536 1.0e-22 112.8 609 25.9
Rhsim03G0028700 Rhododendron simsii HOM05D007911 ORTHO05D009536 1.8e-22 112.1 340 33.2
Lalb_Chr25g0287291 Lupinus albus HOM05D007911 ORTHO05D009536 3.9e-22 110.9 196 37.8
Oeu035501.1 Olea europaea HOM05D007911 ORTHO05D009536 2.6e-21 108.2 715 25.9
Glyma.19G136200 Glycine max HOM05D007911 ORTHO05D009536 4.4e-21 107.5 810 24.6
ClCG04G003660 Citrullus lanatus HOM05D007911 ORTHO05D009536 9.7e-21 106.3 715 24.5
Lalb_Chr01g0017411 Lupinus albus HOM05D007911 ORTHO05D009536 1.3e-20 105.9 729 24.6
PGR004G0024 Punica granatum HOM05D007911 ORTHO05D009536 2.8e-20 104.8 152 44.7
VMungo0720G0307 Vigna mungo HOM05D007911 ORTHO05D009536 6.3e-20 103.6 128 47.7
vmacro21970 Vaccinium macrocarpon HOM05D007911 ORTHO05D009536 1.4e-19 102.4 326 31.9
FAN05G5247 Fragaria x ananassa HOM05D020102 ORTHO05D009536 6.9e-19 100.1 329 28.9
MELO3C026340.2 Cucumis melo HOM05D007911 ORTHO05D009536 5.9e-18 97.1 715 25.3
HanXRQChr08g0234551 Helianthus annuus HOM05D007911 ORTHO05D009536 5.0e-17 94.0 296 29.4
Solyc04g016290.3 Solanum lycopersicum HOM05D017238 ORTHO05D009536 2.5e-16 91.7 154 40.9
Ciclev10005612m.g Citrus clementina HOM05D007911 ORTHO05D044634 3.2e-16 91.3 221 36.2
Peaxi162Scf00130g00827 Petunia axillaris HOM05D017238 ORTHO05D009536 4.2e-16 90.9 121 43.8
Sed0016742 Sechium edule HOM05D007911 ORTHO05D009536 9.4e-16 89.7 675 25.2
Sopen04g008390 Solanum pennellii HOM05D017238 ORTHO05D009536 9.4e-16 89.7 184 38.6
Medtr2g012890 Medicago truncatula HOM05D007911 ORTHO05D009536 1.6e-15 89.0 137 37.2
Nitab4.5_0001618g0290 Nicotiana tabacum HOM05D017238 ORTHO05D009536 4.7e-15 87.4 374 28.3
Lsat_1_v5_gn_9_31060 Lactuca sativa HOM05D007911 ORTHO05D009536 1.4e-14 85.9 284 30.6
Nitab4.5_0000826g0230 Nicotiana tabacum HOM05D017238 ORTHO05D009536 1.8e-14 85.5 582 26.8
PSO339G2888 Papaver somniferum HOM05D007911 ORTHO05D009536 1.8e-14 85.5 121 40.5
SGA_v2.0_scaffold105G30375 Striga asiatica HOM05D007911 ORTHO05D009536 6.7e-14 83.6 206 33.0
ECA247G2582 Erigeron canadensis HOM05D007911 ORTHO05D009536 4.4e-13 80.9 164 36.0
Aqoxy1G00297 Aquilegia oxysepala HOM05D007911 ORTHO05D009536 9.7e-13 79.7 182 34.6
Atru.chr1.1238 Acer truncatum HOM05D007911 ORTHO05D009536 1.7e-12 79.0 219 32.9
PSO384G4398 Papaver somniferum HOM05D007911 ORTHO05D009536 2.2e-12 78.6 121 39.7
SalBow6G0990 Salvia bowleyana HOM05D007911 ORTHO05D009536 2.8e-12 78.2 111 44.1
SalBow6G1456 Salvia bowleyana HOM05D007911 ORTHO05D009536 2.8e-12 78.2 111 44.1
SGA_v2.0_scaffold69G23124 Striga asiatica HOM05D007911 ORTHO05D009536 2.4e-11 75.1 228 29.4
Cc06_g17980 Coffea canephora HOM05D007911 ORTHO05D009536 7.0e-11 73.6 109 42.2
Duzib106G0470 Durio zibethinus HOM05D007911 ORTHO05D009536 1.6e-10 72.4 196 32.7
CAN.G676.9 Capsicum annuum HOM05D017238 ORTHO05D009536 2.0e-10 72.0 359 29.0
AUR62026093 Chenopodium quinoa HOM05D021336 ORTHO05D009536 4.5e-10 70.9 364 24.5
AUR62024506 Chenopodium quinoa HOM05D021336 ORTHO05D009536 1.7e-09 68.9 480 24.8
MSTRG.6410 Avicennia marina HOM05D007911 ORTHO05D009536 2.2e-09 68.6 604 22.8
arahy.Tifrunner.gnm1.ann1.808QWK Arachis hypogaea HOM05D007911 ORTHO05D009536 3.8e-09 67.8 61 47.5
Hund24682 Selenicereus undatus HOM05D007911 ORTHO05D009536 4.2e-08 64.3 201 27.9
CsaV3_4G027600 Cucumis sativus L. HOM05D007911 ORTHO05D009536 1.6e-07 62.4 712 23.6
Hund19135 Selenicereus undatus HOM05D021336 ORTHO05D009536 6.1e-07 60.5 120 35.8
Sc13g0001600 Simmondsia chinensis HOM05D007911 ORTHO05D009536 8.0e-07 60.1 116 36.2
EL10Ac3g07134 Beta vulgaris HOM05D021336 ORTHO05D009536 3.0e-06 58.2 398 23.9


User provided reference genes

Program Settings