Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G040100 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.3e-160 569.7 293 100.0
Manes.09G003700 Manihot esculenta HOM05D004518 ORTHO05D005434 3.1e-130 468.8 290 79.3
Potri.016G035800 Populus trichocarpa HOM05D004518 ORTHO05D005434 1.2e-129 466.8 293 82.9
Atru.chr1.1396 Acer truncatum HOM05D004518 ORTHO05D005434 3.4e-129 465.3 293 79.9
Cfa019996 Carpinus fangiana HOM05D004518 ORTHO05D005434 9.4e-127 457.2 293 78.8
Dinv05720 Davidia involucrata HOM05D004518 ORTHO05D005434 2.1e-126 456.1 294 78.6
Thecc.05G127700 Theobroma cacao HOM05D004518 ORTHO05D005434 3.6e-126 455.3 294 78.6
TWI53G0703 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.7e-125 451.1 292 79.1
Dinv03206 Davidia involucrata HOM05D004518 ORTHO05D005434 1.1e-124 450.3 294 78.6
ClCG10G013700 Citrullus lanatus HOM05D004518 ORTHO05D005434 1.5e-124 449.9 293 77.8
CiPaw.10G040700 Carya illinoinensis HOM05D004518 ORTHO05D005434 2.0e-124 449.5 293 77.5
MELO3C026597.2 Cucumis melo HOM05D004518 ORTHO05D005434 2.6e-124 449.1 294 78.9
CsaV3_3G042950 Cucumis sativus L. HOM05D004518 ORTHO05D005434 4.4e-124 448.4 293 78.2
Gohir.D13G001500 Gossypium hirsutum HOM05D004518 ORTHO05D005434 9.7e-124 447.2 294 77.6
Gorai.013G001400 Gossypium raimondii HOM05D004518 ORTHO05D005434 9.7e-124 447.2 294 77.6
COL.COLO4_07077 Corchorus olitorius HOM05D004518 ORTHO05D005434 1.3e-123 446.8 294 77.6
Lj1g0025115 Lotus japonicus HOM05D004518 ORTHO05D005434 1.7e-123 446.4 293 76.8
Prupe.7G034400 Prunus persica HOM05D004518 ORTHO05D005434 2.8e-123 445.7 293 77.1
RcHm_v2.0_Chr2g0125741 Rosa chinensis HOM05D004518 ORTHO05D005434 3.7e-123 445.3 293 77.1
MD14G1089500 Malus domestica HOM05D004518 ORTHO05D005434 3.1e-122 442.2 293 75.1
GSVIVG01025741001 Vitis vinifera HOM05D004518 ORTHO05D005434 3.1e-122 442.2 295 76.6
Medtr7g089550 Medicago truncatula HOM05D004518 ORTHO05D005434 5.3e-122 441.4 293 75.1
Sed0000448 Sechium edule HOM05D004518 ORTHO05D005434 2.0e-121 439.5 293 74.7
Lalb_Chr14g0365751 Lupinus albus HOM05D004518 ORTHO05D005434 2.6e-121 439.1 293 75.1
CSS0002759 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.0e-120 437.2 295 76.3
CSS0023469 Camellia sinensis var. sinensis HOM05D004518 ORTHO05D005434 1.0e-120 437.2 295 76.3
FAN05G1433 Fragaria x ananassa HOM05D004518 ORTHO05D005434 1.0e-120 437.2 293 75.8
Hma1.2p1_0252F.1_g102810 Hydrangea macrophylla HOM05D004518 ORTHO05D005434 1.3e-120 436.8 295 75.6
AT3G56740 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 1.7e-120 436.4 294 76.5
MD12G1096200 Malus domestica HOM05D004518 ORTHO05D005434 2.9e-120 435.6 293 75.8
CiPaw.09G048700 Carya illinoinensis HOM05D004518 ORTHO05D005434 3.8e-120 435.3 293 74.1
Glyma.19G129500 Glycine max HOM05D004518 ORTHO05D005434 3.8e-120 435.3 294 75.2
Phvul.001G121800 Phaseolus vulgaris HOM05D004518 ORTHO05D005434 3.8e-120 435.3 296 74.7
PGR031G0872 Punica granatum HOM05D004518 ORTHO05D005434 3.8e-120 435.3 293 76.8
Thhalv10006131m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 8.5e-120 434.1 294 76.2
Sp5g05830 Schrenkiella parvula HOM05D004518 ORTHO05D005434 8.5e-120 434.1 293 75.1
CANSAT64G1638 Cannabis sativa HOM05D004518 ORTHO05D005434 1.1e-119 433.7 293 76.1
CARHR166870 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.1e-119 433.7 294 76.2
Carub.0005s2348 Capsella rubella HOM05D004518 ORTHO05D005434 1.9e-119 433.0 294 75.5
Glyma.03G126400 Glycine max HOM05D004518 ORTHO05D005434 4.2e-119 431.8 294 75.2
THA.LOC104803258 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.5e-119 431.4 296 76.4
Aa31LG10G11580 Aethionema arabicum HOM05D004518 ORTHO05D005434 7.2e-119 431.0 294 77.6
FvH4_6g25340 Fragaria vesca HOM05D004518 ORTHO05D005434 7.2e-119 431.0 293 74.7
AL5G38100 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.2e-118 430.3 294 75.5
Duzib106G1523 Durio zibethinus HOM05D004518 ORTHO05D005434 1.2e-118 430.3 294 74.1
arahy.Tifrunner.gnm1.ann1.5HY1FK Arachis hypogaea HOM05D004518 ORTHO05D005434 2.1e-118 429.5 323 69.3
Sed0017951 Sechium edule HOM05D004518 ORTHO05D005434 2.1e-118 429.5 291 76.6
VMungo1383G1992 Vigna mungo HOM05D004518 ORTHO05D005434 2.7e-118 429.1 297 74.1
Actinidia06430 Actinidia chinensis HOM05D004518 ORTHO05D005434 4.7e-118 428.3 295 75.6
BcaC07g40121 Brassica carinata HOM05D004518 ORTHO05D005434 6.1e-118 427.9 294 75.2
TWI74G1405 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.1e-118 427.9 292 75.7
Lalb_Chr24g0400371 Lupinus albus HOM05D004518 ORTHO05D005434 3.0e-117 425.6 293 73.0
Haze_20236 Corylus avellana HOM05D002003 ORTHO05D005434 5.2e-117 424.9 327 69.1
FAN09G3120 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.7e-117 424.5 319 69.6
TWI77G0289 Tripterygium wilfordii HOM05D004518 ORTHO05D005434 6.7e-117 424.5 292 76.0
BcaC07g39982 Brassica carinata HOM05D004518 ORTHO05D005434 5.7e-116 421.4 294 74.8
EL10Ac3g07249 Beta vulgaris HOM05D004518 ORTHO05D005434 4.8e-115 418.3 294 72.8
PSO339G3176 Papaver somniferum HOM05D004518 ORTHO05D005434 1.8e-114 416.4 295 72.5
THA.LOC104824396 Tarenaya hassleriana HOM05D004518 ORTHO05D005434 5.3e-114 414.8 296 73.0
Cc06_g19630 Coffea canephora HOM05D004518 ORTHO05D005434 1.2e-113 413.7 294 70.4
A09p49580 Brassica napus HOM05D004518 ORTHO05D005434 1.6e-113 413.3 306 71.9
BraA09t40411Z Brassica rapa HOM05D004518 ORTHO05D005434 1.6e-113 413.3 306 71.9
Migut.J01644 Erythranthe guttata HOM05D004518 ORTHO05D005434 1.6e-113 413.3 294 71.4
BolC8t50814H Brassica oleracea HOM05D004518 ORTHO05D005434 2.6e-113 412.5 306 71.9
PSO384G3583 Papaver somniferum HOM05D004518 ORTHO05D005434 3.5e-113 412.1 295 72.2
TAR623G1611 Trochodendron aralioides HOM05D004518 ORTHO05D005434 1.0e-112 410.6 293 72.7
Thhalv10017035m.g Eutrema salsugineum HOM05D004518 ORTHO05D005434 2.9e-112 409.1 294 73.5
Ciclev10012184m.g Citrus clementina HOM05D004518 ORTHO05D005434 3.8e-112 408.7 328 68.0
SGA_v2.0_scaffold69G23161 Striga asiatica HOM05D004518 ORTHO05D005434 8.5e-112 407.5 294 71.1
PGSC0003DMG400023695 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.9e-111 406.4 295 68.5
MBI13_g09215_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 2.5e-111 406.0 297 69.4
Oeu022968.1 Olea europaea HOM05D004518 ORTHO05D005434 2.5e-111 406.0 295 70.5
Rhsim07G0181600 Rhododendron simsii HOM05D004518 ORTHO05D005434 2.5e-111 406.0 317 67.8
Sp4g23460 Schrenkiella parvula HOM05D004518 ORTHO05D005434 5.5e-111 404.8 294 73.1
AL4G39130 Arabidopsis lyrata HOM05D004518 ORTHO05D005434 1.6e-110 403.3 296 71.3
Peaxi162Scf00696g00027 Petunia axillaris HOM05D004518 ORTHO05D005434 3.6e-110 402.1 298 67.8
AT2G41160 Arabidopsis thaliana HOM05D004518 ORTHO05D005434 4.7e-110 401.7 296 70.9
Eucgr.A02232 Eucalyptus grandis HOM05D004518 ORTHO05D005434 8.0e-110 401.0 291 70.1
Sopen10g031320 Solanum pennellii HOM05D004518 ORTHO05D005434 1.0e-109 400.6 295 67.5
Solyc10g080810.2 Solanum lycopersicum HOM05D004518 ORTHO05D005434 4.0e-109 398.7 295 67.1
C08p31960 Brassica napus HOM05D004518 ORTHO05D005434 6.7e-109 397.9 305 70.2
BraA05t19203Z Brassica rapa HOM05D004518 ORTHO05D005434 8.8e-109 397.5 296 70.9
HanXRQChr10g0292841 Helianthus annuus HOM05D004518 ORTHO05D005434 8.8e-109 397.5 294 68.7
ECA247G2040 Erigeron canadensis HOM05D004518 ORTHO05D005434 1.3e-107 393.7 293 67.9
MSTRG.19796 Avicennia marina HOM05D004518 ORTHO05D005434 4.8e-107 391.7 293 67.2
Lsat_1_v5_gn_9_30021 Lactuca sativa HOM05D004518 ORTHO05D005434 4.8e-107 391.7 290 68.3
BolC4t21891H Brassica oleracea HOM05D004518 ORTHO05D005434 1.4e-106 390.2 297 70.4
Eucgr.K01645 Eucalyptus grandis HOM05D004518 ORTHO05D005434 7.0e-106 387.9 295 68.5
MBI19_g14619_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 7.0e-106 387.9 321 64.5
CARHR136250 Cardamine hirsuta HOM05D004518 ORTHO05D005434 1.6e-105 386.7 293 69.6
Carub.0004s2347 Capsella rubella HOM05D004518 ORTHO05D005434 2.0e-105 386.3 296 69.3
Oeu063781.2 Olea europaea HOM05D004518 ORTHO05D005434 2.7e-105 386.0 353 58.6
SGA_v2.0_scaffold66G22264 Striga asiatica HOM05D004518 ORTHO05D005434 2.7e-105 386.0 284 70.8
Aa31LG3G910 Aethionema arabicum HOM05D004518 ORTHO05D005434 5.9e-105 384.8 292 68.8
unitig_744.g24180 Utricularia gibba HOM05D004518 ORTHO05D005434 1.0e-104 384.0 296 65.9
Aa31LG3G900 Aethionema arabicum HOM05D004518 ORTHO05D005434 1.3e-104 383.6 310 66.1
A05p02070 Brassica napus HOM05D004518 ORTHO05D005434 6.5e-104 381.3 288 70.5
Gohir.A13G002100 Gossypium hirsutum HOM05D004518 ORTHO05D005434 7.2e-103 377.9 294 69.0
Nitab4.5_0001173g0020 Nicotiana tabacum HOM05D004518 ORTHO05D005434 7.2e-103 377.9 295 65.1
C04p02460 Brassica napus HOM05D004518 ORTHO05D005434 1.2e-102 377.1 289 69.9
BcaC02g12756 Brassica carinata HOM05D004518 ORTHO05D005434 2.7e-102 375.9 338 62.1
Nn7g36811 Nelumbo nucifera HOM05D004518 ORTHO05D005434 8.0e-102 374.4 272 69.9
Sabra06G0027100 Salix brachista HOM05D004518 ORTHO05D005434 3.0e-101 372.5 279 76.0
CDE08G0004 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 7.5e-100 367.9 301 64.1
Aqoxy2G00434 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.6e-97 360.1 238 73.9
QL07p011297 Quercus lobata HOM05D004518 ORTHO05D005434 7.7e-97 357.8 276 67.8
Duzib128G0186 Durio zibethinus HOM05D004518 ORTHO05D005434 3.8e-96 355.5 237 74.3
CDE08G0582 Ceratophyllum demersum HOM05D004518 ORTHO05D005434 5.5e-95 351.7 295 64.1
unitig_21.g20688 Utricularia gibba HOM05D004518 ORTHO05D005434 7.2e-95 351.3 296 59.1
HPP92_018980 Vanilla planifolia HOM05D004518 ORTHO05D005434 1.2e-94 350.5 294 61.2
Zm00001eb128690 Zea mays HOM05D004518 ORTHO05D005434 4.7e-94 348.6 294 61.9
FAN02G2919 Fragaria x ananassa HOM05D004518 ORTHO05D005434 6.1e-94 348.2 237 73.8
Peaxi162Scf00076g00330 Petunia axillaris HOM05D004518 ORTHO05D005434 1.8e-93 346.7 286 63.3
Os01g0268800 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 4.9e-91 338.6 294 60.9
vmacro05025 Vaccinium macrocarpon HOM05D004518 ORTHO05D005434 7.0e-90 334.7 301 61.1
CAN.G128.73 Capsicum annuum HOM05D004518 ORTHO05D005434 9.2e-90 334.3 239 68.2
Hund19087 Selenicereus undatus HOM05D004518 ORTHO05D005434 7.8e-89 331.3 294 62.2
arahy.Tifrunner.gnm1.ann1.CJ2XLM Arachis hypogaea HOM05D004518 ORTHO05D005434 7.3e-87 324.7 314 59.2
AUR62030305 Chenopodium quinoa HOM05D004518 ORTHO05D005434 2.3e-85 319.7 294 60.2
Hund24582 Selenicereus undatus HOM05D004518 ORTHO05D005434 2.3e-85 319.7 294 60.9
Psat3g079720 Pisum sativum HOM05D004518 ORTHO05D005434 9.8e-84 314.3 209 75.1
AUR62018357 Chenopodium quinoa HOM05D004518 ORTHO05D005434 5.4e-82 308.5 294 59.5
Sc13g0001070 Simmondsia chinensis HOM05D004518 ORTHO05D005434 1.3e-80 303.9 205 75.6
Mapoly0023s0107 Marchantia polymorpha HOM05D004518 ORTHO05D005434 3.9e-80 302.4 308 53.6
Pp3c15_13440 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.3e-79 299.3 293 53.9
TPR.G16082 Trifolium pratense HOM05D002003 ORTHO05D002037 4.3e-79 298.9 205 74.1
HPP92_001027 Vanilla planifolia HOM05D004518 ORTHO05D005434 2.1e-78 296.6 252 61.1
SMO364G0164 Selaginella moellendorffii HOM05D004518 ORTHO05D005434 4.4e-76 288.9 309 53.1
Actinidia22259 Actinidia chinensis HOM05D004518 ORTHO05D005434 7.5e-76 288.1 217 72.8
Aqoxy2G02076 Aquilegia oxysepala HOM05D004518 ORTHO05D005434 1.3e-75 287.3 205 72.2
DCAR_020579 Daucus carota HOM05D004518 ORTHO05D005434 3.5e-73 279.3 206 72.3
ATR0307G082 Amborella trichopoda HOM05D004518 ORTHO05D005434 1.7e-72 276.9 207 69.1
Pp3c9_17200 Physcomitrium patens HOM05D004518 ORTHO05D005434 3.0e-72 276.2 274 53.6
SHI48963 Sapria himalayana HOM05D004518 ORTHO05D005434 1.9e-71 273.5 369 46.3
Zm00001eb150410 Zea mays HOM05D004518 ORTHO05D005434 2.8e-70 269.6 249 55.8
AagrBONN_evm.TU.Sc2ySwM_344.4495 Anthoceros agrestis HOM05D004518 ORTHO05D005434 2.9e-67 259.6 218 58.7
CDE02G2541 Ceratophyllum demersum HOM05D002603 ORTHO05D002907 3.2e-66 256.1 293 51.5
SGA_v2.0_scaffold66G22363 Striga asiatica HOM05D004518 ORTHO05D005434 1.7e-64 250.4 327 48.3
Lj1A1090G38 Lonicera japonica HOM05D004518 ORTHO05D005434 5.2e-61 238.8 289 48.8
CBR_g11167 Chara braunii HOM05D004518 ORTHO05D005434 6.4e-59 231.9 317 42.3
Os01g0806000 Oryza sativa ssp. japonica HOM05D004518 ORTHO05D005434 1.6e-57 227.3 170 64.7
Lj2A402T37 Lonicera japonica HOM05D004518 ORTHO05D005434 1.1e-55 221.1 173 69.4
CBR_g18715 Chara braunii HOM05D004518 ORTHO05D005434 2.0e-52 210.3 333 40.5
Cpa.g.sc92.78 Carica papaya HOM05D004518 ORTHO05D005434 1.5e-47 194.1 131 72.5
Pp3c26_11360 Physcomitrium patens HOM05D004518 ORTHO05D005434 2.2e-43 180.3 329 36.5
TPR.G27640 Trifolium pratense HOM05D004518 ORTHO05D005434 6.7e-32 142.1 101 70.3
MSTRG.5996 Avicennia marina HOM05D004518 ORTHO05D005434 1.3e-30 137.9 90 72.2
Cre08.g386050 Chlamydomonas reinhardtii HOM05D004518 ORTHO05D005434 2.4e-29 133.7 310 33.5
SEGI_26369 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 4.6e-25 119.4 79 67.1
BolC4t21949H Brassica oleracea HOM05D004518 ORTHO05D005434 4.8e-22 109.4 256 37.1
TAR369G0459 Trochodendron aralioides HOM05D004518 ORTHO05D005434 6.3e-22 109.0 100 65.0
Psat3g079760 Pisum sativum HOM05D004518 ORTHO05D005434 3.1e-21 106.7 78 70.5
C04p03070 Brassica napus HOM05D004518 ORTHO05D005434 6.9e-21 105.5 286 35.0
MCO13G544 Micromonas commoda HOM05D004518 ORTHO05D005434 7.7e-20 102.1 326 29.8
FAN02G0789 Fragaria x ananassa HOM05D004518 ORTHO05D011253 3.9e-16 89.7 56 78.6
Dinv05308 Davidia involucrata HOM05D004518 ORTHO05D005434 8.8e-16 88.6 60 68.3
MBI19_g45264_MAGBIO Magnolia biondii HOM05D004518 ORTHO05D005434 1.8e-13 80.9 142 39.4
PGSC0003DMG400012448 Solanum tuberosum HOM05D004518 ORTHO05D005434 4.4e-07 59.7 55 54.5
PGSC0003DMG400010553 Solanum tuberosum HOM05D004518 ORTHO05D005434 1.7e-06 57.8 51 54.9
SEGI_18914 Sequoiadendron giganteum HOM05D004518 ORTHO05D005434 2.2e-06 57.4 104 44.2


User provided reference genes

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