Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G032300 Populus trichocarpa HOM05D004369 ORTHO05D004907 9.5e-139 496.9 261 100.0
Sabra06G0021600 Salix brachista HOM05D004369 ORTHO05D004907 8.1e-114 414.1 261 83.9
Potri.016G029600 Populus trichocarpa HOM05D004369 ORTHO05D004907 1.6e-101 373.2 264 81.4
Sabra16G0033500 Salix brachista HOM05D004369 ORTHO05D004907 2.3e-100 369.4 261 75.5
Haze_20292 Corylus avellana HOM05D004369 ORTHO05D004907 2.8e-66 256.1 262 61.1
Manes.08G065900 Manihot esculenta HOM05D004369 ORTHO05D004907 3.7e-66 255.8 260 60.0
Cfa019946 Carpinus fangiana HOM05D004369 ORTHO05D004907 4.5e-64 248.8 264 57.6
TWI74G0038 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 1.7e-63 246.9 267 56.2
CiPaw.09G052400 Carya illinoinensis HOM05D004369 ORTHO05D004907 6.5e-63 245.0 266 56.4
TWI53G1196 Tripterygium wilfordii HOM05D004369 ORTHO05D004907 4.2e-62 242.3 264 56.1
Ciclev10012618m.g Citrus clementina HOM05D004369 ORTHO05D004907 1.2e-61 240.7 264 59.1
Manes.09G001100 Manihot esculenta HOM05D004369 ORTHO05D004907 2.7e-61 239.6 261 57.5
Atru.chr1.1512 Acer truncatum HOM05D004369 ORTHO05D004907 6.1e-61 238.4 264 58.0
Thecc.05G119700 Theobroma cacao HOM05D004369 ORTHO05D004907 4.0e-60 235.7 279 54.5
Duzib106G1975 Durio zibethinus HOM05D004369 ORTHO05D004907 8.8e-60 234.6 262 55.7
Prupe.6G310500 Prunus persica HOM05D004369 ORTHO05D004907 8.2e-58 228.0 274 53.3
Duzib128G0931 Durio zibethinus HOM05D004369 ORTHO05D004907 4.1e-57 225.7 264 53.4
Nn7g37071 Nelumbo nucifera HOM05D004369 ORTHO05D004907 4.5e-56 222.2 262 56.5
VMungo1383G1978 Vigna mungo HOM05D004369 ORTHO05D004907 1.0e-55 221.1 271 53.1
MD04G1191900 Malus domestica HOM05D004369 ORTHO05D004907 1.3e-55 220.7 278 52.5
Glyma.03G120700 Glycine max HOM05D004369 ORTHO05D004907 2.2e-55 219.9 266 53.4
Glyma.19G125300 Glycine max HOM05D004369 ORTHO05D004907 2.9e-55 219.5 264 51.9
Cpa.g.sc33.191 Carica papaya HOM05D004369 ORTHO05D004907 5.0e-55 218.8 265 52.5
TAR623G1559 Trochodendron aralioides HOM05D004369 ORTHO05D004907 1.1e-54 217.6 261 52.1
Dinv06038 Davidia involucrata HOM05D004369 ORTHO05D004907 3.2e-54 216.1 258 51.2
Phvul.001G116900 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 4.7e-53 212.2 271 50.2
Psat0ss9348g0120 Pisum sativum HOM05D004369 ORTHO05D004907 1.4e-52 210.7 278 52.2
MBI13_g13129_MAGBIO Magnolia biondii HOM05D004369 ORTHO05D004907 3.0e-52 209.5 261 50.6
CiPaw.10G044100 Carya illinoinensis HOM05D004369 ORTHO05D004907 2.6e-51 206.5 224 58.0
Ca_08356_v3 Cicer arietinum L. HOM05D004369 ORTHO05D004907 3.4e-51 206.1 279 52.3
FvH4_6g07790 Fragaria vesca HOM05D004369 ORTHO05D004907 5.7e-51 205.3 273 49.8
PGR142G3989 Punica granatum HOM05D004369 ORTHO05D004907 1.3e-50 204.1 276 50.4
FAN14G1324 Fragaria x ananassa HOM05D002683 ORTHO05D007757 1.7e-50 203.8 273 49.1
FAN09G2868 Fragaria x ananassa HOM05D004369 ORTHO05D004907 2.8e-50 203.0 272 50.4
QL07p014155 Quercus lobata HOM05D004369 ORTHO05D004907 9.1e-49 198.0 282 50.4
Lj1g0025044 Lotus japonicus HOM05D004369 ORTHO05D004907 1.6e-48 197.2 265 49.4
Cc00_g08990 Coffea canephora HOM05D004369 ORTHO05D004907 1.3e-47 194.1 264 51.1
RhsimUnG0020900 Rhododendron simsii HOM05D004369 ORTHO05D004907 2.9e-47 193.0 265 50.9
Phvul.002G069001 Phaseolus vulgaris HOM05D004369 ORTHO05D004907 3.8e-47 192.6 256 49.2
Lalb_Chr14g0365411 Lupinus albus HOM05D004369 ORTHO05D004907 6.5e-47 191.8 269 48.0
CSS0041918 Camellia sinensis var. sinensis HOM05D004369 ORTHO05D004907 1.9e-46 190.3 269 48.3
ClCG10G016480 Citrullus lanatus HOM05D004369 ORTHO05D004907 3.2e-46 189.5 276 47.1
FAN02G1899 Fragaria x ananassa HOM05D002683 ORTHO05D007757 5.5e-46 188.7 272 48.2
RcHm_v2.0_Chr3g0457501 Rosa chinensis HOM05D004369 ORTHO05D004907 5.5e-46 188.7 200 55.5
DCAR_013523 Daucus carota HOM05D004369 ORTHO05D004907 1.2e-45 187.6 259 46.7
Eucgr.K01686 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.4e-44 184.1 282 49.3
MELO3C009728.2 Cucumis melo HOM05D004369 ORTHO05D004907 1.8e-44 183.7 262 46.9
Medtr7g088620 Medicago truncatula HOM05D004369 ORTHO05D004907 4.0e-44 182.6 277 49.5
Gohir.A01G192900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 2.2e-42 176.8 261 48.3
Lalb_Chr22g0357981 Lupinus albus HOM05D004369 ORTHO05D004907 2.2e-42 176.8 269 46.8
CsaV3_3G039860 Cucumis sativus L. HOM05D004369 ORTHO05D004907 1.4e-41 174.1 268 45.1
Gohir.D01G183200 Gossypium hirsutum HOM05D004369 ORTHO05D004907 1.4e-41 174.1 269 48.0
Sc19g0007900 Simmondsia chinensis HOM05D004369 ORTHO05D004907 2.4e-41 173.3 262 46.2
Actinidia37863 Actinidia chinensis HOM05D004369 ORTHO05D004907 3.1e-41 172.9 259 45.6
Gorai.002G226300 Gossypium raimondii HOM05D004369 ORTHO05D004907 4.1e-41 172.6 261 48.3
Lsat_1_v5_gn_8_109221 Lactuca sativa HOM05D004369 ORTHO05D004907 1.2e-40 171.0 268 47.4
CiPaw.12G092400 Carya illinoinensis HOM05D004369 ORTHO05D004907 1.7e-39 167.2 194 55.2
Nitab4.5_0001270g0170 Nicotiana tabacum HOM05D004369 ORTHO05D004907 6.6e-39 165.2 261 46.0
Gohir.A11G305500 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.3e-38 162.9 262 43.1
Aqoxy2G00033 Aquilegia oxysepala HOM05D004369 ORTHO05D004907 5.6e-38 162.2 274 47.1
Migut.J01607 Erythranthe guttata HOM05D004369 ORTHO05D004907 5.6e-38 162.2 268 43.7
Gorai.007G351100 Gossypium raimondii HOM05D004369 ORTHO05D004907 5.6e-38 162.2 262 42.7
Gohir.D11G320900 Gossypium hirsutum HOM05D004369 ORTHO05D004907 9.5e-38 161.4 262 42.7
Nitab4.5_0000123g0220 Nicotiana tabacum HOM05D004369 ORTHO05D004907 1.2e-37 161.0 260 44.2
MSTRG.6296 Avicennia marina HOM05D004369 ORTHO05D004907 6.1e-37 158.7 262 45.4
TPR.G22743 Trifolium pratense HOM05D004369 ORTHO05D004907 1.8e-36 157.1 182 60.4
PGR042G0777 Punica granatum HOM05D004369 ORTHO05D004907 3.0e-36 156.4 266 44.4
EL10Ac3g07333 Beta vulgaris HOM05D004369 ORTHO05D004907 4.0e-36 156.0 269 46.5
A09p49750 Brassica napus HOM05D004369 ORTHO05D004907 6.8e-36 155.2 274 40.9
BraA09t40428Z Brassica rapa HOM05D004369 ORTHO05D004907 6.8e-36 155.2 274 40.9
MSTRG.19768 Avicennia marina HOM05D004369 ORTHO05D004907 1.5e-35 154.1 264 44.7
PGSC0003DMG400007200 Solanum tuberosum HOM05D004369 ORTHO05D004907 4.4e-35 152.5 259 41.3
AUR62018430 Chenopodium quinoa HOM05D004369 ORTHO05D004907 5.7e-35 152.1 270 44.1
AUR62021003 Chenopodium quinoa HOM05D004369 ORTHO05D004907 1.3e-34 151.0 258 42.6
Ah.13g077330 Amaranthus hybridus HOM05D004369 ORTHO05D004907 2.2e-34 150.2 257 44.4
THA.LOC104803243 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.7e-34 149.4 271 41.7
THA.LOC104824387 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 3.7e-34 149.4 269 42.4
Oeu009515.1 Olea europaea HOM05D004369 ORTHO05D004907 4.9e-34 149.1 264 42.4
Ah.04g150390 Amaranthus hybridus HOM05D004369 ORTHO05D004907 6.4e-34 148.7 258 43.0
SalBow6G6868 Salvia bowleyana HOM05D004369 ORTHO05D004907 8.3e-34 148.3 256 43.4
Solyc10g077130.1 Solanum lycopersicum HOM05D004369 ORTHO05D004907 1.1e-33 147.9 258 41.1
BcaC07g40111 Brassica carinata HOM05D004369 ORTHO05D004907 5.4e-33 145.6 276 41.7
Sopen10g028810 Solanum pennellii HOM05D004369 ORTHO05D004907 7.0e-33 145.2 258 40.7
Sp5g05710 Schrenkiella parvula HOM05D004369 ORTHO05D004907 1.6e-32 144.1 273 41.8
Oeu060762.1 Olea europaea HOM05D004369 ORTHO05D004907 2.7e-32 143.3 272 42.3
BolC8t50831H Brassica oleracea HOM05D004369 ORTHO05D004907 3.5e-32 142.9 273 39.6
Nitab4.5_0000062g0280 Nicotiana tabacum HOM05D004369 ORTHO05D004907 3.5e-32 142.9 262 42.0
Aa31LG10G11730 Aethionema arabicum HOM05D004369 ORTHO05D004907 4.6e-32 142.5 271 45.4
BcaC07g40000 Brassica carinata HOM05D004369 ORTHO05D004907 4.6e-32 142.5 273 39.6
C08p32120 Brassica napus HOM05D004369 ORTHO05D004907 4.6e-32 142.5 273 39.6
Sp4g23330 Schrenkiella parvula HOM05D004369 ORTHO05D004907 4.6e-32 142.5 273 39.6
Carub.0005s2361 Capsella rubella HOM05D004369 ORTHO05D004907 5.9e-32 142.1 278 40.6
Thhalv10006505m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 1.3e-31 141.0 273 42.5
A04p03590 Brassica napus HOM05D004369 ORTHO05D004907 1.7e-31 140.6 267 39.3
MSTRG.26187 Avicennia marina HOM05D004369 ORTHO05D004907 2.3e-31 140.2 265 41.5
BraA04t16076Z Brassica rapa HOM05D004369 ORTHO05D004907 2.3e-31 140.2 267 39.3
Oeu044231.1 Olea europaea HOM05D004369 ORTHO05D004907 5.0e-31 139.0 261 42.1
THA.LOC104815333 Tarenaya hassleriana HOM05D004369 ORTHO05D004907 8.6e-31 138.3 269 40.1
AT3G56880 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.1e-30 137.9 276 39.9
Oeu057811.1 Olea europaea HOM05D004369 ORTHO05D004907 1.9e-30 137.1 264 39.8
Peaxi162Scf00607g00054 Petunia axillaris HOM05D004369 ORTHO05D004907 1.9e-30 137.1 264 40.5
BcaB02g08344 Brassica carinata HOM05D004369 ORTHO05D004907 2.5e-30 136.7 269 37.5
Oeu023004.1 Olea europaea HOM05D004369 ORTHO05D004907 4.3e-30 136.0 265 43.4
BcaC02g12874 Brassica carinata HOM05D004369 ORTHO05D004907 7.3e-30 135.2 269 37.9
CARHR167030 Cardamine hirsuta HOM05D004369 ORTHO05D004907 1.2e-29 134.4 279 37.6
C04p68730 Brassica napus HOM05D004369 ORTHO05D004907 2.8e-29 133.3 269 39.4
BolC4t28378H Brassica oleracea HOM05D004369 ORTHO05D004907 2.8e-29 133.3 269 39.4
CARHR136130 Cardamine hirsuta HOM05D004369 ORTHO05D004907 3.6e-29 132.9 271 39.9
AL5G38270 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 4.7e-29 132.5 279 38.4
BcaC02g09876 Brassica carinata HOM05D004369 ORTHO05D004907 4.7e-29 132.5 269 38.3
C04p35650 Brassica napus HOM05D004369 ORTHO05D004907 4.7e-29 132.5 269 38.3
BolC4t25239H Brassica oleracea HOM05D004369 ORTHO05D004907 4.7e-29 132.5 269 38.3
Thhalv10017173m.g Eutrema salsugineum HOM05D004369 ORTHO05D004907 6.2e-29 132.1 275 38.2
CANSAT80G1482 Cannabis sativa HOM05D004369 ORTHO05D004907 8.0e-29 131.7 268 40.3
Sed0018866 Sechium edule HOM05D004369 ORTHO05D004907 5.2e-28 129.0 173 50.9
AL4G38990 Arabidopsis lyrata HOM05D004369 ORTHO05D004907 2.6e-27 126.7 273 39.2
HPP92_012446 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.6e-27 126.7 198 40.4
A04p31330 Brassica napus HOM05D004369 ORTHO05D004907 7.5e-27 125.2 269 37.5
Oeu034749.1 Olea europaea HOM05D004369 ORTHO05D004907 9.8e-27 124.8 267 40.4
Oeu034750.1 Olea europaea HOM05D004369 ORTHO05D004907 1.3e-26 124.4 268 39.6
BraA04t18590Z Brassica rapa HOM05D004369 ORTHO05D004907 2.2e-26 123.6 269 36.4
HanXRQChr09g0258571 Helianthus annuus HOM05D004369 ORTHO05D004907 1.1e-25 121.3 260 39.6
AT2G41010 Arabidopsis thaliana HOM05D004369 ORTHO05D004907 1.9e-25 120.6 271 36.5
PGSC0003DMG400028198 Solanum tuberosum HOM05D004369 ORTHO05D004907 2.4e-25 120.2 261 38.3
Gorai.007G351200 Gossypium raimondii HOM05D004369 ORTHO05D004907 2.7e-24 116.7 262 35.1
Gohir.A11G305600 Gossypium hirsutum HOM05D004369 ORTHO05D004907 3.5e-24 116.3 263 35.0
Carub.0004s2334 Capsella rubella HOM05D004369 ORTHO05D004907 4.6e-24 115.9 182 45.1
Migut.K00167 Erythranthe guttata HOM05D004369 ORTHO05D004907 4.6e-24 115.9 262 39.3
PSO339G3328 Papaver somniferum HOM05D004369 ORTHO05D004907 4.6e-24 115.9 201 41.3
Gohir.D11G321000 Gossypium hirsutum HOM05D004369 ORTHO05D004907 6.0e-24 115.5 262 35.1
PSO384G0208 Papaver somniferum HOM05D004369 ORTHO05D004907 1.3e-23 114.4 198 41.4
HanXRQChr03g0086901 Helianthus annuus HOM05D004369 ORTHO05D004907 3.9e-23 112.8 268 38.8
Lalb_Chr24g0400611 Lupinus albus HOM05D004369 ORTHO05D004907 8.6e-23 111.7 213 42.7
DCAR_020610 Daucus carota HOM05D004369 ORTHO05D004907 1.5e-22 110.9 188 43.6
CAN.G959.22 Capsicum annuum HOM05D004369 ORTHO05D004907 2.5e-22 110.2 165 47.3
ECA236G2438 Erigeron canadensis HOM05D004369 ORTHO05D004907 2.5e-22 110.2 248 39.1
CDE09G1065 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 9.5e-22 108.2 247 36.8
SalBow1G6186 Salvia bowleyana HOM05D004369 ORTHO05D004907 9.5e-22 108.2 267 34.5
Sopen10g031550 Solanum pennellii HOM05D004369 ORTHO05D004907 9.5e-22 108.2 261 35.2
Peaxi162Scf00003g05315 Petunia axillaris HOM05D004369 ORTHO05D004907 2.1e-21 107.1 207 41.1
SGA_v2.0_scaffold66G22309 Striga asiatica HOM05D004369 ORTHO05D004907 2.1e-21 107.1 270 35.9
ATR1096G063 Amborella trichopoda HOM05D004369 ORTHO05D004907 8.9e-20 101.7 252 32.9
Eucgr.A02182 Eucalyptus grandis HOM05D004369 ORTHO05D004907 1.2e-19 101.3 162 42.6
HPP92_014347 Vanilla planifolia HOM05D004369 ORTHO05D004907 3.7e-18 96.3 202 37.6
SGA_v2.0_scaffold69G23192 Striga asiatica HOM05D004369 ORTHO05D004907 4.9e-18 95.9 271 32.5
Sc25g0005580 Simmondsia chinensis HOM05D004369 ORTHO05D004907 6.4e-18 95.5 168 43.5
MSTRG.10776 Avicennia marina HOM05D004369 ORTHO05D004907 3.2e-17 93.2 201 40.3
CDE02G4522 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 3.5e-16 89.7 202 38.6
SGA_v2.0_scaffold106G30551 Striga asiatica HOM05D004369 ORTHO05D004907 3.9e-15 86.3 260 34.2
unitig_21.g20674 Utricularia gibba HOM05D004369 ORTHO05D004907 1.1e-14 84.7 267 33.7
CDE04G0994 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 5.6e-14 82.4 191 35.6
CDE08G1070 Ceratophyllum demersum HOM05D004369 ORTHO05D004907 2.8e-13 80.1 175 37.7
SHI12275 Sapria himalayana HOM05D004369 ORTHO05D004907 8.1e-13 78.6 170 40.6
HPP92_028709 Vanilla planifolia HOM05D004369 ORTHO05D004907 2.0e-11 73.9 105 42.9
CAN.G128.96 Capsicum annuum HOM05D004369 ORTHO05D004907 3.4e-11 73.2 76 59.2
SEGI_18240 Sequoiadendron giganteum HOM05D004369 ORTHO05D004907 1.3e-10 71.2 199 30.2
Os01g0278000 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 5.4e-09 65.9 80 47.5
Zm00001eb128970 Zea mays HOM05D004369 ORTHO05D004907 3.0e-07 60.1 123 38.2
Os11g0131100 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 5.1e-07 59.3 153 32.7
Os12g0127800 Oryza sativa ssp. japonica HOM05D004369 ORTHO05D004907 8.6e-07 58.5 86 41.9
unitig_744.g24165 Utricularia gibba HOM05D004369 ORTHO05D004907 5.6e-06 55.8 115 38.3


User provided reference genes

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