Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G029500 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.1e-68 262.3 142 100.0
Potri.006G028500 Populus trichocarpa HOM05D005060 ORTHO05D005975 4.1e-59 231.5 142 90.8
Sabra06G0020700 Salix brachista HOM05D005060 ORTHO05D005975 1.3e-44 183.3 175 65.1
Potri.006G028101 Populus trichocarpa HOM05D005060 ORTHO05D005975 1.4e-27 126.7 95 77.9
Manes.08G066600 Manihot esculenta HOM05D005060 ORTHO05D005975 1.2e-18 97.1 145 46.2
ClCG04G005980 Citrullus lanatus HOM05D005060 ORTHO05D005975 6.5e-17 91.3 143 45.5
Manes.13G072000 Manihot esculenta HOM05D005060 ORTHO05D005975 1.5e-16 90.1 142 48.6
Potri.016G027600 Populus trichocarpa HOM05D005060 ORTHO05D005975 2.5e-16 89.4 150 45.3
Haze_20302 Corylus avellana HOM05D005060 ORTHO05D005975 3.3e-16 89.0 146 48.6
QL07p014517 Quercus lobata HOM05D005060 ORTHO05D005975 5.5e-16 88.2 114 52.6
MD07G1060800 Malus domestica HOM05D005060 ORTHO05D005975 1.2e-15 87.0 114 50.9
CsaV3_4G029150 Cucumis sativus L. HOM05D005060 ORTHO05D005975 2.1e-15 86.3 150 44.7
CiPaw.09G163900 Carya illinoinensis HOM05D005060 ORTHO05D005975 3.6e-15 85.5 106 50.0
MELO3C019148.2 Cucumis melo HOM05D005060 ORTHO05D005975 4.7e-15 85.1 150 44.0
Ca_08351_v3 Cicer arietinum L. HOM05D005060 ORTHO05D005975 3.0e-14 82.4 138 41.3
Rhsim04G0118500 Rhododendron simsii HOM05D005060 ORTHO05D005975 4.0e-14 82.0 116 44.8
Sabra16G0032200 Salix brachista HOM05D005060 ORTHO05D005975 4.0e-14 82.0 150 43.3
Prupe.2G065900 Prunus persica HOM05D005060 ORTHO05D005975 1.2e-13 80.5 137 46.7
Lj1g0025022 Lotus japonicus HOM05D005060 ORTHO05D005975 4.4e-13 78.6 138 42.8
Lsat_1_v5_gn_8_109400 Lactuca sativa HOM05D005060 ORTHO05D005975 1.3e-12 77.0 92 46.7
Haze_20306 Corylus avellana HOM05D005060 ORTHO05D005975 2.2e-12 76.3 139 41.7
Sabra16G0031900 Salix brachista HOM05D005060 ORTHO05D005975 2.8e-12 75.9 108 46.3
Sed0011991 Sechium edule HOM05D005060 ORTHO05D005975 2.8e-12 75.9 142 40.1
Cfa019938 Carpinus fangiana HOM05D005060 ORTHO05D005975 6.3e-12 74.7 115 45.2
MD02G1260500 Malus domestica HOM05D005060 ORTHO05D005975 6.3e-12 74.7 114 46.5
Atru.chr1.1518 Acer truncatum HOM05D005060 ORTHO05D005975 8.3e-12 74.3 145 45.5
Psat0s2745g0280 Pisum sativum HOM05D005060 ORTHO05D005975 8.3e-12 74.3 151 37.7
RcHm_v2.0_Chr1g0331611 Rosa chinensis HOM05D005060 ORTHO05D005975 8.3e-12 74.3 108 49.1
unitig_21.g20673 Utricularia gibba HOM05D005060 ORTHO05D005975 8.3e-12 74.3 150 39.3
VMungo1383G0657 Vigna mungo HOM05D005060 ORTHO05D005975 8.3e-12 74.3 144 38.2
TPR.G27972 Trifolium pratense HOM05D005060 ORTHO05D005975 1.1e-11 73.9 135 40.0
Lalb_Chr24g0400621 Lupinus albus HOM05D005060 ORTHO05D005975 1.4e-11 73.6 145 38.6
Nitab4.5_0003286g0020 Nicotiana tabacum HOM05D005060 ORTHO05D005975 1.8e-11 73.2 153 39.2
Phvul.001G116500 Phaseolus vulgaris HOM05D005060 ORTHO05D005975 3.1e-11 72.4 145 37.2
TWI53G1989 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 4.1e-11 72.0 139 41.7
vmacro08973 Vaccinium macrocarpon HOM05D005060 ORTHO05D005975 4.1e-11 72.0 146 40.4
FAN10G4368 Fragaria x ananassa HOM05D002241 ORTHO05D002458 1.6e-10 70.1 104 46.2
Glyma.19G124900 Glycine max HOM05D005060 ORTHO05D005975 2.0e-10 69.7 135 36.3
Gohir.A13G001200 Gossypium hirsutum HOM05D005060 ORTHO05D005975 4.5e-10 68.6 86 47.7
Lj1C23T21 Lonicera japonica HOM05D005060 ORTHO05D005975 5.9e-10 68.2 112 42.9
Atru.chr1.1520 Acer truncatum HOM05D005060 ORTHO05D005975 7.8e-10 67.8 154 41.6
Lalb_Chr22g0358011 Lupinus albus HOM05D005060 ORTHO05D005975 7.8e-10 67.8 107 44.9
Gohir.A01G192800 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.0e-09 67.4 148 37.8
Gohir.D01G177000 Gossypium hirsutum HOM05D005060 ORTHO05D005975 1.0e-09 67.4 148 37.8
Gorai.002G226200 Gossypium raimondii HOM05D005060 ORTHO05D005975 1.0e-09 67.4 148 37.8
CAN.G128.101 Capsicum annuum HOM05D005060 ORTHO05D005975 1.7e-09 66.6 151 37.1
Medtr7g088520 Medicago truncatula HOM05D005060 ORTHO05D005975 2.3e-09 66.2 148 38.5
Cpa.g.sc33.198 Carica papaya HOM05D005060 ORTHO05D005975 5.0e-09 65.1 149 40.3
FAN06G1820 Fragaria x ananassa HOM05D002241 ORTHO05D002458 5.0e-09 65.1 104 42.3
BcaC08g44810 Brassica carinata HOM05D005060 ORTHO05D005975 6.6e-09 64.7 106 43.4
FAN03G0591 Fragaria x ananassa HOM05D005060 ORTHO05D005975 6.6e-09 64.7 146 39.0
SGA_v2.0_scaffold66G22311 Striga asiatica HOM05D005060 ORTHO05D005975 6.6e-09 64.7 93 45.2
Thecc.05G132800 Theobroma cacao HOM05D005060 ORTHO05D005975 8.6e-09 64.3 91 47.3
Cpa.g.sc33.199 Carica papaya HOM05D005060 ORTHO05D005975 1.5e-08 63.5 148 37.8
FvH4_7g05170 Fragaria vesca HOM05D005060 ORTHO05D005975 1.9e-08 63.2 143 37.8
FAN06G0894 Fragaria x ananassa HOM05D005060 ORTHO05D005975 1.9e-08 63.2 143 37.8
Lalb_Chr14g0365381 Lupinus albus HOM05D005060 ORTHO05D005975 1.9e-08 63.2 140 39.3
arahy.Tifrunner.gnm1.ann1.U3TF2Z Arachis hypogaea HOM05D005060 ORTHO05D005975 3.3e-08 62.4 62 53.2
FAN01G1650 Fragaria x ananassa HOM05D005060 ORTHO05D005975 3.3e-08 62.4 133 36.1
Eucgr.A02181 Eucalyptus grandis HOM05D005060 ORTHO05D005975 4.3e-08 62.0 148 37.8
arahy.Tifrunner.gnm1.ann1.3R5KQS Arachis hypogaea HOM05D005060 ORTHO05D005975 5.6e-08 61.6 136 36.8
Ciclev10013047m.g Citrus clementina HOM05D005060 ORTHO05D005975 5.6e-08 61.6 146 38.4
Nn7g37114 Nelumbo nucifera HOM05D005060 ORTHO05D005975 5.6e-08 61.6 145 37.2
PGR042G1122 Punica granatum HOM05D005060 ORTHO05D005975 5.6e-08 61.6 90 44.4
Sopen10g031600 Solanum pennellii HOM05D005060 ORTHO05D005975 2.1e-07 59.7 152 36.2
HanXRQChr05g0130501 Helianthus annuus HOM05D005060 ORTHO05D005975 6.1e-07 58.2 126 33.3
Solyc10g081100.3 Solanum lycopersicum HOM05D005060 ORTHO05D005975 6.1e-07 58.2 152 35.5
Actinidia05489 Actinidia chinensis HOM05D005060 ORTHO05D005975 8.0e-07 57.8 46 65.2
Sc13g0000780 Simmondsia chinensis HOM05D005060 ORTHO05D005975 8.0e-07 57.8 124 37.9
AT3G56910 Arabidopsis thaliana HOM05D005060 ORTHO05D005975 1.0e-06 57.4 156 40.4
Ah.04g150220 Amaranthus hybridus HOM05D005060 ORTHO05D005975 1.4e-06 57.0 73 41.1
Os01g0278900 Oryza sativa ssp. japonica HOM05D005060 ORTHO05D005975 1.8e-06 56.6 150 34.7
Psat3g082360 Pisum sativum HOM05D005060 ORTHO05D005975 1.8e-06 56.6 152 34.2
BcaC02g09878 Brassica carinata HOM05D005060 ORTHO05D005975 2.3e-06 56.2 143 37.8
C04p35630 Brassica napus HOM05D005060 ORTHO05D005975 2.3e-06 56.2 143 37.8
BolC4t25241H Brassica oleracea HOM05D005060 ORTHO05D005975 2.3e-06 56.2 143 37.8
CARHR167060 Cardamine hirsuta HOM05D005060 ORTHO05D005975 2.3e-06 56.2 158 39.2
Nitab4.5_0000062g0300 Nicotiana tabacum HOM05D005060 ORTHO05D005975 2.3e-06 56.2 151 35.1
GSVIVG01025849001 Vitis vinifera HOM05D005060 ORTHO05D005975 2.3e-06 56.2 107 39.3
Ciclev10013042m.g Citrus clementina HOM05D005060 ORTHO05D005975 3.0e-06 55.8 151 38.4
PGSC0003DMG400028107 Solanum tuberosum HOM05D005060 ORTHO05D005975 3.0e-06 55.8 152 35.5
Migut.J01559 Erythranthe guttata HOM05D005060 ORTHO05D005975 4.0e-06 55.5 147 36.7
PSO339G2385 Papaver somniferum HOM05D005060 ORTHO05D005975 4.0e-06 55.5 146 34.9
Hma1.2p1_0031F.1_g018400 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 6.8e-06 54.7 91 40.7
Hma1.2p1_2089F.1_g313840 Hydrangea macrophylla HOM05D005060 ORTHO05D005975 6.8e-06 54.7 91 40.7
PSO384G0259 Papaver somniferum HOM05D005060 ORTHO05D005975 6.8e-06 54.7 141 34.0
TWI74G0004 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 6.8e-06 54.7 143 38.5
TWI74G0567 Tripterygium wilfordii HOM05D005060 ORTHO05D005975 6.8e-06 54.7 146 34.9
BcaC07g40003 Brassica carinata HOM05D005060 ORTHO05D005975 8.9e-06 54.3 100 41.0
A09p49780 Brassica napus HOM05D005060 ORTHO05D005975 8.9e-06 54.3 100 41.0
C08p32160 Brassica napus HOM05D005060 ORTHO05D005975 8.9e-06 54.3 100 41.0
BolC8t50834H Brassica oleracea HOM05D005060 ORTHO05D005975 8.9e-06 54.3 100 41.0
BraA09t40431Z Brassica rapa HOM05D005060 ORTHO05D005975 8.9e-06 54.3 100 41.0


User provided reference genes

Program Settings