Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G026600 Populus trichocarpa HOM05D007667 ORTHO05D008033 3.0e-188 661.8 349 100.0
Sabra06G0019700 Salix brachista HOM05D007667 ORTHO05D008033 4.5e-144 515.0 355 82.3
Potri.016G024600 Populus trichocarpa HOM05D007667 ORTHO05D008033 2.4e-137 492.7 353 77.6
Sabra16G0030500 Salix brachista HOM05D007667 ORTHO05D008033 5.0e-127 458.4 358 72.9
QL07p015392 Quercus lobata HOM05D007667 ORTHO05D008033 1.5e-70 270.8 361 51.0
GSVIVG01025830001 Vitis vinifera HOM05D007667 ORTHO05D008033 1.7e-66 257.3 379 45.4
CiPaw.09G161700 Carya illinoinensis HOM05D007667 ORTHO05D008033 1.9e-65 253.8 372 47.0
Cfa019904 Carpinus fangiana HOM05D007667 ORTHO05D008033 1.2e-64 251.1 366 46.4
MD12G1111200 Malus domestica HOM05D007667 ORTHO05D008033 2.1e-64 250.4 372 45.7
Lj1g0016001 Lotus japonicus HOM05D007667 ORTHO05D008033 3.3e-62 243.0 369 46.1
TWI77G1010 Tripterygium wilfordii HOM05D007667 ORTHO05D008033 4.3e-62 242.7 368 46.2
PGR142G2092 Punica granatum HOM05D007667 ORTHO05D008033 1.8e-60 237.3 403 44.4
Glyma.19G122200 Glycine max HOM05D007667 ORTHO05D008033 2.4e-60 236.9 371 46.9
CANSAT01G1982 Cannabis sativa HOM05D007667 ORTHO05D008033 5.3e-60 235.7 404 43.1
arahy.Tifrunner.gnm1.ann1.2JVN0K Arachis hypogaea HOM05D007667 ORTHO05D008033 1.4e-57 227.6 381 43.3
VMungo1383G2866 Vigna mungo HOM05D007667 ORTHO05D008033 3.2e-57 226.5 369 46.6
arahy.Tifrunner.gnm1.ann1.B2YDCU Arachis hypogaea HOM05D007667 ORTHO05D008033 5.5e-57 225.7 374 43.6
Lalb_Chr14g0365211 Lupinus albus HOM05D007667 ORTHO05D008033 7.1e-57 225.3 362 45.0
Medtr7g087970 Medicago truncatula HOM05D007667 ORTHO05D008033 9.3e-57 224.9 365 44.7
Phvul.001G101500 Phaseolus vulgaris HOM05D007667 ORTHO05D008033 2.7e-56 223.4 369 45.3
TAR623G0652 Trochodendron aralioides HOM05D007667 ORTHO05D008033 7.9e-56 221.9 408 40.2
Glyma.03G003800 Glycine max HOM05D007667 ORTHO05D008033 1.3e-55 221.1 370 45.9
Manes.08G067300 Manihot esculenta HOM05D007667 ORTHO05D008033 1.5e-54 217.6 250 52.8
Psat0s3111g0200 Pisum sativum HOM05D007667 ORTHO05D008033 6.3e-53 212.2 367 44.1
Oeu041986.1 Olea europaea HOM05D007667 ORTHO05D008033 2.4e-52 210.3 365 41.1
TPR.G23684 Trifolium pratense HOM05D007667 ORTHO05D008033 3.4e-51 206.5 331 45.0
Eucgr.K01702 Eucalyptus grandis HOM05D007667 ORTHO05D008033 1.7e-50 204.1 400 38.5
Ciclev10012153m.g Citrus clementina HOM05D007667 ORTHO05D008033 1.9e-49 200.7 369 43.6
Haze_20347 Corylus avellana HOM05D007667 ORTHO05D008033 2.7e-48 196.8 307 44.0
CSS0027019 Camellia sinensis var. sinensis HOM05D007667 ORTHO05D008033 5.1e-47 192.6 291 47.1
Sc13g0000730 Simmondsia chinensis HOM05D007667 ORTHO05D008033 2.5e-46 190.3 482 34.9
MBI13_g29622_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.3e-45 188.0 393 40.2
Oeu060747.1 Olea europaea HOM05D007667 ORTHO05D008033 2.8e-45 186.8 362 39.0
Thecc.05G130400 Theobroma cacao HOM05D007667 ORTHO05D008033 1.5e-43 181.0 341 39.3
Atru.chr8.918 Acer truncatum HOM05D007667 ORTHO05D008033 3.4e-43 179.9 360 37.5
Migut.J01575 Erythranthe guttata HOM05D007667 ORTHO05D008033 1.0e-42 178.3 371 37.2
vmacro07594 Vaccinium macrocarpon HOM05D007667 ORTHO05D008033 1.3e-42 177.9 406 36.2
Hund19052 Selenicereus undatus HOM05D007667 ORTHO05D008033 5.0e-42 176.0 417 40.5
MSTRG.6277 Avicennia marina HOM05D007667 ORTHO05D008033 1.4e-41 174.5 387 35.9
ClCG04G005020 Citrullus lanatus HOM05D007667 ORTHO05D008033 5.5e-41 172.6 422 34.6
Nn7g37184 Nelumbo nucifera HOM05D007667 ORTHO05D001109 3.0e-39 166.8 369 36.0
Ah.13g077440 Amaranthus hybridus HOM05D007667 ORTHO05D008033 2.0e-38 164.1 386 33.4
Sed0012185 Sechium edule HOM05D007667 ORTHO05D008033 3.3e-38 163.3 420 36.0
CsaV3_4G028970 Cucumis sativus L. HOM05D007667 ORTHO05D008033 7.4e-38 162.2 417 36.9
RhsimUnG0021200 Rhododendron simsii HOM05D007667 ORTHO05D008033 7.4e-38 162.2 388 36.3
RcHm_v2.0_Chr3g0495051 Rosa chinensis HOM05D007667 ORTHO05D008033 1.3e-37 161.4 371 35.0
EL10Ac3g07362 Beta vulgaris HOM05D007667 ORTHO05D008033 4.8e-37 159.5 367 37.1
Cc06_g20370 Coffea canephora HOM05D007667 ORTHO05D008033 4.8e-37 159.5 379 32.2
Aqoxy3G03841 Aquilegia oxysepala HOM05D007667 ORTHO05D008033 8.2e-37 158.7 377 32.1
SGA_v2.0_scaffold66G22329 Striga asiatica HOM05D007667 ORTHO05D008033 4.1e-36 156.4 338 36.1
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.6e-35 153.7 341 37.5
Duzib128G0300 Durio zibethinus HOM05D007667 ORTHO05D008033 2.6e-35 153.7 325 36.6
SalBow6G3731 Salvia bowleyana HOM05D007667 ORTHO05D008033 2.9e-34 150.2 469 31.3
Dinv02787 Davidia involucrata HOM05D007667 ORTHO05D008033 2.1e-32 144.1 267 41.6
COL.COLO4_22773 Corchorus olitorius HOM05D007667 ORTHO05D008033 2.7e-32 143.7 342 35.4
Lj1A1064T35 Lonicera japonica HOM05D007667 ORTHO05D008033 4.7e-32 142.9 258 41.1
Nitab4.5_0002201g0030 Nicotiana tabacum HOM05D007667 ORTHO05D008033 6.1e-32 142.5 356 35.1
ClCG10G016970 Citrullus lanatus HOM05D007667 ORTHO05D008033 1.3e-29 134.8 258 38.0
Sed0023543 Sechium edule HOM05D007667 ORTHO05D008033 8.2e-29 132.1 328 33.2
Prupe.7G023900 Prunus persica HOM05D007667 ORTHO05D008033 1.4e-28 131.3 239 40.6
Ca_08329_v3 Cicer arietinum L. HOM05D007667 ORTHO05D008033 4.5e-27 126.3 249 41.4
PSO339G5815 Papaver somniferum HOM05D007667 ORTHO05D008033 1.7e-26 124.4 452 26.8
PSO384G0308 Papaver somniferum HOM05D007667 ORTHO05D008033 1.5e-25 121.3 449 26.5
SalBow6G3030 Salvia bowleyana HOM05D007667 ORTHO05D008033 2.5e-25 120.6 464 28.7
Solyc08g067000.3 Solanum lycopersicum HOM05D007667 ORTHO05D008033 2.1e-24 117.5 352 29.3
HPP92_012452 Vanilla planifolia HOM05D007667 ORTHO05D008033 3.6e-24 116.7 376 31.6
Cfa010473 Carpinus fangiana HOM05D007667 ORTHO05D008033 4.0e-23 113.2 168 47.0
PGSC0003DMG400029088 Solanum tuberosum HOM05D007667 ORTHO05D008033 2.0e-22 110.9 326 29.8
CsaV3_3G039420 Cucumis sativus L. HOM05D007667 ORTHO05D008033 4.4e-22 109.8 365 29.9
Sopen08g020950 Solanum pennellii HOM05D007667 ORTHO05D008033 5.7e-22 109.4 350 28.6
MELO3C030720.2 Cucumis melo HOM05D007667 ORTHO05D008033 2.2e-21 107.5 263 33.8
ATR1096G118 Amborella trichopoda HOM05D007667 ORTHO05D008033 5.3e-20 102.8 456 28.5
Lalb_Chr22g0358171 Lupinus albus HOM05D007667 ORTHO05D008033 7.0e-20 102.4 237 36.7
CDE02G4005 Ceratophyllum demersum HOM05D000558 ORTHO05D008033 1.6e-19 101.3 261 31.0
THA.LOC104803305 Tarenaya hassleriana HOM05D009749 ORTHO05D008033 2.0e-19 100.9 216 34.3
arahy.Tifrunner.gnm1.ann1.EU10QV Arachis hypogaea HOM05D007667 ORTHO05D008033 7.7e-19 99.0 185 42.2
DCAR_020622 Daucus carota HOM05D007667 ORTHO05D008033 7.7e-19 99.0 161 42.9
Actinidia37860 Actinidia chinensis HOM05D007667 ORTHO05D008033 3.8e-18 96.7 359 28.4
arahy.Tifrunner.gnm1.ann1.8XR3F9 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.1e-17 95.1 185 42.2
Lalb_Chr22g0358161 Lupinus albus HOM05D007667 ORTHO05D008033 2.7e-16 90.5 105 51.4
arahy.Tifrunner.gnm1.ann1.S7MPKE Arachis hypogaea HOM05D007667 ORTHO05D008033 6.3e-13 79.3 84 56.0
AUR62020980 Chenopodium quinoa HOM05D007667 ORTHO05D008033 8.3e-13 79.0 136 37.5
MBI13_g08646_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 1.8e-12 77.8 69 60.9
AT3G56810 Arabidopsis thaliana HOM05D009749 ORTHO05D008033 1.6e-11 74.7 408 24.0
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.0e-11 74.3 86 53.5
BcaC08g44807 Brassica carinata HOM05D009749 ORTHO05D008033 2.7e-11 73.9 193 29.5
Cpa.g.sc33.176 Carica papaya HOM05D007667 ORTHO05D008033 4.5e-11 73.2 176 34.1
C06p23780 Brassica napus HOM05D009749 ORTHO05D008033 5.9e-11 72.8 192 28.6
Ah.04g150340 Amaranthus hybridus HOM05D003123 ORTHO05D003492 7.7e-11 72.4 133 36.8
MBI13_g08647_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 7.7e-11 72.4 126 43.7
BcaB02g07636 Brassica carinata HOM05D009749 ORTHO05D008033 1.0e-10 72.0 192 29.2
BcaC07g40118 Brassica carinata HOM05D009749 ORTHO05D008033 1.7e-10 71.2 232 25.0
BolC4t25234H Brassica oleracea HOM05D009749 ORTHO05D008033 1.7e-10 71.2 235 26.4
arahy.Tifrunner.gnm1.ann1.3W78Z9 Arachis hypogaea HOM05D007667 ORTHO05D008033 2.9e-10 70.5 152 37.5
arahy.Tifrunner.gnm1.ann1.48UEJW Arachis hypogaea HOM05D007667 ORTHO05D008033 2.9e-10 70.5 86 53.5
BolC6t37547H Brassica oleracea HOM05D009749 ORTHO05D008033 2.9e-10 70.5 194 28.9
HPP92_014340 Vanilla planifolia HOM05D007667 ORTHO05D008033 5.0e-10 69.7 184 32.6
BraA04t16080Z Brassica rapa HOM05D009749 ORTHO05D008033 6.5e-10 69.3 264 25.8
arahy.Tifrunner.gnm1.ann1.8931ZB Arachis hypogaea HOM05D007667 ORTHO05D008033 8.6e-10 68.9 160 38.8
MELO3C019169.2 Cucumis melo HOM05D007667 ORTHO05D008033 8.6e-10 68.9 148 29.1
A07p23080 Brassica napus HOM05D009749 ORTHO05D008033 1.1e-09 68.6 190 30.0
BraA07t29970Z Brassica rapa HOM05D009749 ORTHO05D008033 1.1e-09 68.6 190 30.0
Carub.0005s2354 Capsella rubella HOM05D009749 ORTHO05D008033 1.1e-09 68.6 259 25.5
Dinv21555 Davidia involucrata HOM05D007667 ORTHO05D008033 1.1e-09 68.6 85 49.4
arahy.Tifrunner.gnm1.ann1.NYTL45 Arachis hypogaea HOM05D007667 ORTHO05D008033 1.5e-09 68.2 84 51.2
BcaB02g08346 Brassica carinata HOM05D009749 ORTHO05D008033 1.5e-09 68.2 237 26.6
BcaC07g39991 Brassica carinata HOM05D009749 ORTHO05D008033 1.5e-09 68.2 211 26.1
BolC8t50822H Brassica oleracea HOM05D009749 ORTHO05D008033 1.5e-09 68.2 211 26.1
AL5G38190 Arabidopsis lyrata HOM05D009749 ORTHO05D008033 1.9e-09 67.8 209 29.2
CDE04G0047 Ceratophyllum demersum HOM05D007667 ORTHO05D008033 1.9e-09 67.8 398 25.1
C04p35700 Brassica napus HOM05D009749 ORTHO05D008033 2.5e-09 67.4 228 25.9
C08p32040 Brassica napus HOM05D009749 ORTHO05D008033 2.5e-09 67.4 229 24.9
CARHR166960 Cardamine hirsuta HOM05D009749 ORTHO05D008033 3.3e-09 67.0 197 27.4
Sp5g05780 Schrenkiella parvula HOM05D009749 ORTHO05D008033 3.3e-09 67.0 190 26.8
A09p49630 Brassica napus HOM05D009749 ORTHO05D008033 5.5e-09 66.2 193 28.0
BraA09t40416Z Brassica rapa HOM05D009749 ORTHO05D008033 5.5e-09 66.2 193 28.0
A04p03560 Brassica napus HOM05D009749 ORTHO05D008033 1.6e-08 64.7 252 25.0
Thhalv10006250m.g Eutrema salsugineum HOM05D009749 ORTHO05D008033 2.8e-08 63.9 89 37.1
unitig_744.g24157 Utricularia gibba HOM05D007667 ORTHO05D008033 3.6e-08 63.5 188 40.4
MBI13_g31583_MAGBIO Magnolia biondii HOM05D007667 ORTHO05D008033 4.7e-08 63.2 133 39.8
arahy.Tifrunner.gnm1.ann1.W45WAC Arachis hypogaea HOM05D007667 ORTHO05D008033 8.0e-08 62.4 85 51.8
FvH4_1g29470 Fragaria vesca HOM05D007667 ORTHO05D008033 1.2e-06 58.5 95 38.9


User provided reference genes

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