Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.2e-289 997.3 485 100.0
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 2.5e-249 865.1 486 88.3
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 9.8e-222 773.5 486 80.5
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.8e-218 761.5 488 78.9
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 3.4e-214 748.4 477 78.8
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 7.8e-211 737.3 485 76.7
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 2.5e-209 732.3 485 76.1
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 5.2e-207 724.5 488 76.2
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 1.2e-206 723.4 476 76.3
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 2.6e-206 722.2 476 76.1
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 5.8e-206 721.1 476 75.4
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 3.7e-205 718.4 500 73.8
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 2.0e-203 712.6 481 74.6
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 2.0e-203 712.6 490 73.9
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 4.6e-203 711.4 492 73.0
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 4.6e-203 711.4 480 74.6
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 6.0e-203 711.1 478 75.7
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 7.8e-203 710.7 487 72.5
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 2.5e-201 705.7 498 72.3
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 1.2e-200 703.4 469 74.8
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 6.8e-199 697.6 488 71.9
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 5.8e-198 694.5 476 74.2
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 9.9e-198 693.7 479 73.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 2.2e-197 692.6 488 71.5
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 1.9e-196 689.5 474 73.4
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 3.2e-196 688.7 478 74.1
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.1e-196 688.3 485 72.8
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 2.7e-195 685.6 479 72.7
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 2.7e-195 685.6 478 74.1
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.7e-194 682.9 479 73.1
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 1.5e-193 679.9 477 72.7
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 4.3e-193 678.3 484 71.9
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 5.6e-193 677.9 499 69.1
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 7.3e-193 677.6 479 72.7
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 4.7e-192 674.9 475 72.2
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 3.1e-191 672.2 482 70.3
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.7e-189 666.4 479 71.2
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.1e-188 663.7 475 70.9
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 1.4e-188 663.3 476 70.6
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 7.8e-187 657.5 487 69.6
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.8e-187 657.5 478 69.9
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 2.3e-186 656.0 467 70.4
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 2.3e-186 656.0 460 73.0
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 2.5e-185 652.5 483 68.3
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 3.3e-185 652.1 475 72.2
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 4.3e-185 651.7 475 69.5
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 4.3e-185 651.7 515 67.4
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.8e-184 649.0 482 68.5
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 3.6e-184 648.7 485 69.5
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 3.6e-184 648.7 481 69.9
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 4.7e-184 648.3 482 68.7
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 4.7e-184 648.3 482 68.7
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 4.7e-184 648.3 464 72.6
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 9.0e-183 644.0 479 70.1
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 9.0e-183 644.0 482 67.0
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 9.9e-182 640.6 477 69.0
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 3.8e-181 638.6 475 68.4
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 4.9e-181 638.3 482 67.8
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.4e-181 637.9 462 70.3
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 1.9e-180 636.3 480 67.3
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 1.9e-180 636.3 465 69.7
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 5.4e-180 634.8 482 66.8
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 1.2e-179 633.6 465 70.8
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 1.7e-178 629.8 481 68.4
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 8.7e-178 627.5 474 68.6
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 8.1e-176 620.9 490 66.1
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 2.4e-175 619.4 452 72.1
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 6.9e-175 617.8 532 61.3
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 2.9e-173 612.5 485 65.6
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 4.2e-172 608.6 505 67.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 6.0e-171 604.7 490 65.9
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 1.3e-170 603.6 461 66.8
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 1.5e-169 600.1 462 68.8
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.5e-169 599.4 489 62.6
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 2.8e-168 595.9 467 64.9
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.6e-166 589.3 478 65.9
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.1e-163 579.7 481 64.4
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 3.9e-162 575.5 468 64.1
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 2.5e-161 572.8 472 63.6
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 4.3e-161 572.0 478 64.0
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 1.2e-158 563.9 489 61.1
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 6.5e-157 558.1 404 70.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 8.4e-157 557.8 500 61.6
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 5.5e-156 555.1 506 59.7
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 2.1e-155 553.1 554 55.4
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.7e-155 552.7 479 60.8
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 3.5e-155 552.4 476 62.2
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 6.7e-154 548.1 472 61.9
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.6e-152 543.5 480 61.7
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 3.7e-152 542.3 466 62.4
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 3.7e-152 542.3 371 73.9
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 1.1e-148 530.8 470 61.5
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 4.6e-147 525.4 488 60.5
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 5.1e-146 521.9 475 57.7
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 6.7e-146 521.5 520 56.9
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 1.1e-145 520.8 406 64.8
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 2.2e-144 516.5 475 59.4
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.4e-143 513.1 471 62.6
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 2.5e-140 503.1 390 66.7
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 2.5e-140 503.1 533 52.9
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 9.4e-140 501.1 384 67.2
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 1.0e-138 497.7 261 87.7
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 9.7e-137 491.1 450 60.2
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 5.3e-135 485.3 844 38.5
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 2.2e-133 479.9 467 55.0
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 2.3e-130 469.9 413 61.5
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 9.7e-129 464.5 513 50.5
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 2.2e-128 463.4 540 48.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.4e-127 460.7 448 57.4
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 6.5e-125 451.8 264 80.7
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 8.0e-115 418.3 344 64.5
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 4.2e-108 396.0 382 59.7
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-97 361.3 633 38.4
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 3.7e-96 356.3 429 51.5
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 2.5e-92 343.6 226 69.9
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 5.4e-87 325.9 337 54.6
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 5.8e-81 305.8 476 39.3
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 1.1e-79 301.6 191 72.8
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 5.8e-73 279.3 266 51.1
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 4.9e-64 249.6 281 44.8
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.1e-63 248.4 132 87.9
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 2.3e-61 240.7 128 87.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 6.6e-61 239.2 387 41.6
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 5.3e-58 229.6 321 40.5
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 4.6e-54 216.5 284 41.5
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.5e-52 211.5 113 85.8
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 7.1e-47 192.6 109 82.6
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 2.2e-35 154.5 87 85.1
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 6.9e-26 122.9 76 76.3
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 9.4e-23 112.5 60 81.7
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 6.7e-21 106.3 81 63.0
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 1.9e-15 88.2 68 57.4
Dinv02985 Davidia involucrata HOM05D005440 ORTHO05D034043 1.2e-14 85.5 53 81.1
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 3.6e-14 84.0 41 90.2
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 1.5e-12 78.6 69 58.0
CAN.G93.4 Capsicum annuum HOM05D000541 ORTHO05D000137 4.1e-10 70.5 94 45.7
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 2.6e-09 67.8 47 70.2
CAN.G1245.16 Capsicum annuum HOM05D001673 ORTHO05D022156 7.7e-09 66.2 45 71.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 1.0e-08 65.9 72 51.4
QL04p060164 Quercus lobata HOM05D005440 ORTHO05D007314 5.5e-07 60.1 118 39.0
Haze_13635 Corylus avellana HOM05D005440 ORTHO05D165560 1.2e-06 58.9 47 70.2


User provided reference genes

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