Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G016700 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.9e-66 255.0 122 100.0
TWI38G0283 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.7e-34 149.4 112 62.5
Prupe.4G006800 Prunus persica HOM05D003663 ORTHO05D005327 2.0e-30 136.0 115 52.2
Lj6g0026147 Lotus japonicus HOM05D003663 ORTHO05D005327 4.9e-29 131.3 103 55.3
TPR.G10569 Trifolium pratense HOM05D003663 ORTHO05D005327 1.1e-28 130.2 125 44.8
arahy.Tifrunner.gnm1.ann1.5NF29Y Arachis hypogaea HOM05D003663 ORTHO05D005327 1.9e-28 129.4 103 53.4
arahy.Tifrunner.gnm1.ann1.CR9YGF Arachis hypogaea HOM05D003663 ORTHO05D005327 1.9e-28 129.4 103 53.4
Ca_00744_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 3.2e-28 128.6 123 45.5
Lalb_Chr20g0119391 Lupinus albus HOM05D003663 ORTHO05D005327 4.2e-28 128.3 125 44.8
Psat1g178200 Pisum sativum HOM05D003663 ORTHO05D005327 4.2e-28 128.3 123 45.5
Glyma.09G012100 Glycine max HOM05D003663 ORTHO05D005327 1.0e-26 123.6 98 53.1
VMungo0540G0424 Vigna mungo HOM05D003663 ORTHO05D005327 1.1e-25 120.2 96 52.1
Phvul.006G141400 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.5e-25 119.8 96 52.1
FvH4_3g00560 Fragaria vesca HOM05D003663 ORTHO05D005327 2.5e-25 119.0 98 49.0
Psat2g004440 Pisum sativum HOM05D003663 ORTHO05D005327 4.3e-25 118.2 128 43.0
TPR.G1287 Trifolium pratense HOM05D003663 ORTHO05D005327 5.6e-25 117.9 128 44.5
FAN25G1738 Fragaria x ananassa HOM05D003663 ORTHO05D005327 1.6e-24 116.3 98 49.0
TWI36G0551 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 1.6e-24 116.3 125 41.6
Medtr5g097370 Medicago truncatula HOM05D003663 ORTHO05D005327 2.1e-24 115.9 128 42.2
Ca_06459_v3 Cicer arietinum L. HOM05D003663 ORTHO05D005327 6.2e-24 114.4 128 41.4
arahy.Tifrunner.gnm1.ann1.8QBK2E Arachis hypogaea HOM05D003663 ORTHO05D005327 8.1e-24 114.0 129 41.1
arahy.Tifrunner.gnm1.ann1.P7DY53 Arachis hypogaea HOM05D003663 ORTHO05D005327 8.1e-24 114.0 129 41.1
TAR627G0054 Trochodendron aralioides HOM05D003663 ORTHO05D005327 1.4e-23 113.2 103 45.6
Nn1g03229 Nelumbo nucifera HOM05D003663 ORTHO05D005327 1.8e-23 112.8 94 47.9
Eucgr.L03441 Eucalyptus grandis HOM05D003663 ORTHO05D005327 3.1e-23 112.1 117 47.9
LjContig00081g0009748 Lotus japonicus HOM05D003663 ORTHO05D005327 3.1e-23 112.1 126 40.5
Glyma.14G007200 Glycine max HOM05D003663 ORTHO05D005327 5.3e-23 111.3 128 40.6
Aqoxy1G04227 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.2e-22 110.2 124 45.2
MELO3C024107.2 Cucumis melo HOM05D003663 ORTHO05D005327 1.2e-22 110.2 106 45.3
CsaV3_7G023690 Cucumis sativus L. HOM05D003663 ORTHO05D005327 1.5e-22 109.8 97 48.5
ClCG02G002710 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.0e-22 109.4 97 48.5
Aqoxy1G04229 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.4e-22 108.2 124 41.1
Aqoxy3G02718 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 4.4e-22 108.2 107 44.9
Sed0003500 Sechium edule HOM05D003663 ORTHO05D005327 4.4e-22 108.2 94 50.0
Phvul.008G285700 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 5.8e-22 107.8 133 39.8
Hma1.2p1_1267F.1_g271530 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.3e-21 106.7 97 44.3
Lalb_Chr17g0349111 Lupinus albus HOM05D003663 ORTHO05D005327 1.3e-21 106.7 129 38.8
Hma1.2p1_2614F.1_g325410 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 2.2e-21 105.9 97 44.3
Potri.016G009000 Populus trichocarpa HOM05D003663 ORTHO05D005327 2.2e-21 105.9 60 78.3
Sed0016160 Sechium edule HOM05D003663 ORTHO05D005327 8.4e-21 104.0 106 44.3
VMungo0647G1338 Vigna mungo HOM05D003663 ORTHO05D005327 8.4e-21 104.0 128 39.1
ClCG01G010650 Citrullus lanatus HOM05D003663 ORTHO05D005327 2.4e-20 102.4 97 51.5
MELO3C028604.2 Cucumis melo HOM05D003663 ORTHO05D005327 4.2e-20 101.7 97 44.3
Cfa016035 Carpinus fangiana HOM05D003663 ORTHO05D005327 1.2e-19 100.1 106 41.5
Sed0002316 Sechium edule HOM05D003663 ORTHO05D005327 2.1e-19 99.4 105 47.6
THA.LOC104827213 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 4.6e-19 98.2 106 37.7
Peaxi162Scf00815g00311 Petunia axillaris HOM05D003663 ORTHO05D005327 7.9e-19 97.4 97 42.3
RcHm_v2.0_Chr2g0156681 Rosa chinensis HOM05D003663 ORTHO05D005327 7.9e-19 97.4 94 40.4
Aqoxy1G04228 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 1.0e-18 97.1 124 38.7
Lj4g0026545 Lotus japonicus HOM05D003663 ORTHO05D005327 1.0e-18 97.1 103 44.7
Psat4g076520 Pisum sativum HOM05D003663 ORTHO05D005327 1.0e-18 97.1 104 45.2
CAN.G65.131 Capsicum annuum HOM05D003663 ORTHO05D005327 1.7e-18 96.3 105 41.9
ATR0624G116 Amborella trichopoda HOM05D003663 ORTHO05D005327 2.3e-18 95.9 98 35.7
QL09p023778 Quercus lobata HOM05D003663 ORTHO05D005327 3.0e-18 95.5 96 43.8
TWI34G0428 Tripterygium wilfordii HOM05D003663 ORTHO05D005327 3.0e-18 95.5 95 43.2
Cpa.g.sc504.5 Carica papaya HOM05D003663 ORTHO05D005327 3.9e-18 95.1 118 39.8
Haze_00422 Corylus avellana HOM05D003663 ORTHO05D005327 3.9e-18 95.1 106 39.6
AL6G38450 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 5.1e-18 94.7 138 32.6
TPR.G17125 Trifolium pratense HOM05D003663 ORTHO05D005327 5.1e-18 94.7 93 48.4
DCAR_010543 Daucus carota HOM05D003663 ORTHO05D005327 1.5e-17 93.2 101 40.6
Medtr4g099150 Medicago truncatula HOM05D003663 ORTHO05D005327 1.9e-17 92.8 93 46.2
Phvul.003G226500 Phaseolus vulgaris HOM05D003663 ORTHO05D005327 1.9e-17 92.8 93 44.1
PGR142G2458 Punica granatum HOM05D003663 ORTHO05D005327 1.9e-17 92.8 129 34.1
Sed0020467 Sechium edule HOM05D003663 ORTHO05D005327 1.9e-17 92.8 110 42.7
AT5G26730 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 3.3e-17 92.0 129 33.3
Nitab4.5_0000021g0580 Nicotiana tabacum HOM05D003663 ORTHO05D005327 3.3e-17 92.0 104 39.4
Nitab4.5_0001762g0070 Nicotiana tabacum HOM05D003663 ORTHO05D005327 5.6e-17 91.3 96 40.6
Nn3g19378 Nelumbo nucifera HOM05D003663 ORTHO05D005327 7.3e-17 90.9 95 41.1
Oeu060390.1 Olea europaea HOM05D002083 ORTHO05D000332 7.3e-17 90.9 96 40.6
Rhsim09G0213000 Rhododendron simsii HOM05D003663 ORTHO05D005327 7.3e-17 90.9 94 40.4
MD09G1122000 Malus domestica HOM05D003663 ORTHO05D005327 9.6e-17 90.5 99 37.4
CARHR196240 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.3e-16 90.1 103 40.8
Glyma.17G149700 Glycine max HOM05D003663 ORTHO05D005327 1.3e-16 90.1 93 41.9
Hma1.2p1_1680F.1_g297170 Hydrangea macrophylla HOM05D003663 ORTHO05D005327 1.3e-16 90.1 109 38.5
CiPaw.06G032900 Carya illinoinensis HOM05D003663 ORTHO05D005327 1.6e-16 89.7 93 43.0
Thhalv10005288m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 1.6e-16 89.7 114 36.8
Lalb_Chr05g0220821 Lupinus albus HOM05D003663 ORTHO05D005327 1.6e-16 89.7 109 38.5
vmacro22176 Vaccinium macrocarpon HOM05D003663 ORTHO05D005327 1.6e-16 89.7 109 38.5
Aqoxy3G02161 Aquilegia oxysepala HOM05D003663 ORTHO05D005327 2.1e-16 89.4 93 43.0
CANSAT21G0248 Cannabis sativa HOM05D003663 ORTHO05D005327 2.1e-16 89.4 95 38.9
Thhalv10014405m.g Eutrema salsugineum HOM05D003663 ORTHO05D005327 2.1e-16 89.4 96 42.7
Sabra19G0059300 Salix brachista HOM05D003663 ORTHO05D005327 2.1e-16 89.4 98 40.8
Sc13g0010870 Simmondsia chinensis HOM05D003663 ORTHO05D005327 2.1e-16 89.4 95 44.2
PGSC0003DMG400027034 Solanum tuberosum HOM05D003663 ORTHO05D005327 2.1e-16 89.4 96 39.6
Oeu027885.1 Olea europaea HOM05D003663 ORTHO05D005327 2.8e-16 89.0 94 41.5
PSO210G1796 Papaver somniferum HOM05D003663 ORTHO05D005327 2.8e-16 89.0 108 38.9
PSO302G0013 Papaver somniferum HOM05D003663 ORTHO05D005327 2.8e-16 89.0 108 38.9
BcaB04g19727 Brassica carinata HOM05D003663 ORTHO05D005327 3.6e-16 88.6 135 31.1
VMungo0251G1526 Vigna mungo HOM05D003663 ORTHO05D005327 3.6e-16 88.6 93 41.9
A02p03870 Brassica napus HOM05D003663 ORTHO05D005327 4.8e-16 88.2 95 42.1
Manes.09G126900 Manihot esculenta HOM05D003663 ORTHO05D005327 4.8e-16 88.2 106 36.8
Potri.019G049600 Populus trichocarpa HOM05D003663 ORTHO05D005327 4.8e-16 88.2 106 39.6
A09p05770 Brassica napus HOM05D003663 ORTHO05D005327 6.2e-16 87.8 107 37.4
BraA02t05351Z Brassica rapa HOM05D003663 ORTHO05D005327 6.2e-16 87.8 95 42.1
BraA09t36218Z Brassica rapa HOM05D003663 ORTHO05D005327 6.2e-16 87.8 107 37.4
Ciclev10017620m.g Citrus clementina HOM05D003663 ORTHO05D005327 6.2e-16 87.8 107 39.3
Sopen06g029160 Solanum pennellii HOM05D003663 ORTHO05D005327 6.2e-16 87.8 96 38.5
THA.LOC104826655 Tarenaya hassleriana HOM05D003663 ORTHO05D005327 8.1e-16 87.4 129 35.7
BolC2t06783H Brassica oleracea HOM05D003663 ORTHO05D005327 1.1e-15 87.0 95 40.0
CSS0037566 Camellia sinensis var. sinensis HOM05D003663 ORTHO05D005327 1.1e-15 87.0 95 42.1
BcaC03g18525 Brassica carinata HOM05D003663 ORTHO05D005327 1.8e-15 86.3 95 40.0
C02p08670 Brassica napus HOM05D003663 ORTHO05D005327 1.8e-15 86.3 95 40.0
C09p06370 Brassica napus HOM05D003663 ORTHO05D005327 1.8e-15 86.3 128 30.5
Carub.0006s1513 Capsella rubella HOM05D003663 ORTHO05D005327 1.8e-15 86.3 107 39.3
CARHR186960 Cardamine hirsuta HOM05D003663 ORTHO05D005327 1.8e-15 86.3 135 33.3
HanXRQChr14g0462981 Helianthus annuus HOM05D003663 ORTHO05D005327 1.8e-15 86.3 96 35.4
SGA_v2.0_scaffold50G18444 Striga asiatica HOM05D003663 ORTHO05D005327 1.8e-15 86.3 99 36.4
BcaC04g23626 Brassica carinata HOM05D003663 ORTHO05D005327 2.4e-15 85.9 128 30.5
BcaNung00434 Brassica carinata HOM05D003663 ORTHO05D005327 2.4e-15 85.9 95 41.1
Ciclev10021912m.g Citrus clementina HOM05D003663 ORTHO05D005327 2.4e-15 85.9 106 37.7
ECA233G1163 Erigeron canadensis HOM05D003663 ORTHO05D005327 2.4e-15 85.9 98 35.7
TAR374G1477 Trochodendron aralioides HOM05D003663 ORTHO05D005327 2.4e-15 85.9 95 36.8
AL6G27920 Arabidopsis lyrata HOM05D003663 ORTHO05D005327 3.1e-15 85.5 95 41.1
Sp6g27190 Schrenkiella parvula HOM05D003663 ORTHO05D005327 3.1e-15 85.5 96 38.5
Cc00_g28240 Coffea canephora HOM05D003663 ORTHO05D005327 4.0e-15 85.1 108 39.8
BolC9t53556H Brassica oleracea HOM05D003663 ORTHO05D005327 5.3e-15 84.7 99 36.4
Eucgr.K00086 Eucalyptus grandis HOM05D003663 ORTHO05D005327 5.3e-15 84.7 95 40.0
MBI04_g20973_MAGBIO Magnolia biondii HOM05D003663 ORTHO05D005327 5.3e-15 84.7 93 39.8
Duzib106G1874 Durio zibethinus HOM05D003663 ORTHO05D005327 6.9e-15 84.3 102 39.2
Carub.0006s2423 Capsella rubella HOM05D003663 ORTHO05D005327 9.0e-15 84.0 129 33.3
Lsat_1_v5_gn_2_136720 Lactuca sativa HOM05D003663 ORTHO05D005327 9.0e-15 84.0 98 34.7
Rhsim03G0221600 Rhododendron simsii HOM05D003663 ORTHO05D005327 1.5e-14 83.2 94 40.4
AT5G16920 Arabidopsis thaliana HOM05D003663 ORTHO05D005327 2.0e-14 82.8 95 40.0
BcaNung02825 Brassica carinata HOM05D003663 ORTHO05D005327 2.0e-14 82.8 111 35.1
A06p36830 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-14 82.8 111 35.1
C07p41660 Brassica napus HOM05D003663 ORTHO05D005327 2.0e-14 82.8 111 35.1
BolC7t44701H Brassica oleracea HOM05D003663 ORTHO05D005327 2.0e-14 82.8 111 35.1
BraA06t26609Z Brassica rapa HOM05D003663 ORTHO05D005327 2.0e-14 82.8 111 35.1
EL10Ac3g05074 Beta vulgaris HOM05D003663 ORTHO05D005327 2.6e-14 82.4 99 36.4
Migut.F00942 Erythranthe guttata HOM05D003663 ORTHO05D005327 2.6e-14 82.4 95 40.0
Lj3P887T57 Lonicera japonica HOM05D003663 ORTHO05D005327 2.6e-14 82.4 99 35.4
BcaNung03959 Brassica carinata HOM05D003663 ORTHO05D005327 5.8e-14 81.3 100 36.0
Duzib177G0557 Durio zibethinus HOM05D003663 ORTHO05D005327 5.8e-14 81.3 94 38.3
Gohir.D11G318900 Gossypium hirsutum HOM05D003663 ORTHO05D005327 7.6e-14 80.9 103 36.9
Gorai.007G348900 Gossypium raimondii HOM05D003663 ORTHO05D005327 7.6e-14 80.9 103 36.9
Gohir.A11G303600 Gossypium hirsutum HOM05D003663 ORTHO05D005327 9.9e-14 80.5 103 37.9
PSO063G6858 Papaver somniferum HOM05D003663 ORTHO05D005327 2.2e-13 79.3 96 36.5
PSO782G5365 Papaver somniferum HOM05D003663 ORTHO05D005327 2.2e-13 79.3 96 36.5
BcaB04g19726 Brassica carinata HOM05D003663 ORTHO05D005327 3.8e-13 78.6 93 38.7
AUR62002065 Chenopodium quinoa HOM05D003663 ORTHO05D005327 3.8e-13 78.6 94 38.3
SalBow2G0094 Salvia bowleyana HOM05D003663 ORTHO05D005327 3.8e-13 78.6 95 38.9
Ah.13g072750 Amaranthus hybridus HOM05D003663 ORTHO05D005327 4.9e-13 78.2 96 36.5
PGR142G2930 Punica granatum HOM05D003663 ORTHO05D005327 1.1e-12 77.0 93 35.5
Medtr2g026520 Medicago truncatula HOM05D003663 ORTHO05D005327 1.4e-12 76.6 65 50.8
Nn1g01862 Nelumbo nucifera HOM05D003663 ORTHO05D005327 3.2e-12 75.5 92 40.2
Prupe.2G326500 Prunus persica HOM05D003663 ORTHO05D005327 1.6e-11 73.2 105 37.1
A02p39370 Brassica napus HOM05D003663 ORTHO05D010021 3.5e-11 72.0 83 36.1
Duzib128G0448 Durio zibethinus HOM05D003663 ORTHO05D005327 4.6e-11 71.6 102 34.3
ATR0829G139 Amborella trichopoda HOM05D003663 ORTHO05D005327 6.0e-11 71.2 99 32.3
COL.COLO4_06064 Corchorus olitorius HOM05D003663 ORTHO05D005327 1.0e-10 70.5 94 36.2
BcaB07g29963 Brassica carinata HOM05D003663 ORTHO05D005327 1.3e-10 70.1 89 34.8
CsaV3_7G002660 Cucumis sativus L. HOM05D003663 ORTHO05D005327 5.1e-10 68.2 59 49.2
Lalb_Chr16g0386341 Lupinus albus HOM05D003663 ORTHO05D005327 8.7e-10 67.4 82 37.8
Os12g0233900 Oryza sativa ssp. japonica HOM05D003663 ORTHO05D005327 1.9e-09 66.2 94 36.2
Sp2g21370 Schrenkiella parvula HOM05D003663 ORTHO05D005327 2.5e-09 65.9 92 33.7
Prupe.3G201600 Prunus persica HOM05D003663 ORTHO05D005327 4.3e-09 65.1 97 34.0
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 2.8e-08 62.4 98 31.6
Actinidia33794 Actinidia chinensis HOM05D003663 ORTHO05D005327 3.7e-08 62.0 63 42.9
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 4.8e-08 61.6 104 29.8
Glyma.15G116750 Glycine max HOM05D003663 ORTHO05D005327 8.1e-08 60.8 45 51.1
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 1.1e-07 60.5 98 29.6
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 5.3e-07 58.2 124 31.5
Glyma.02G305800 Glycine max HOM05D003663 ORTHO05D005327 9.0e-07 57.4 78 39.7
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.5e-06 56.6 111 26.1
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 1.5e-06 56.6 93 31.2
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 2.0e-06 56.2 96 28.1
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 2.6e-06 55.8 113 31.9
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.6e-06 55.8 97 35.1
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 7.6e-06 54.3 98 32.7


User provided reference genes

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