Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.006G013900 Populus trichocarpa HOM05D004898 ORTHO05D005574 9.5e-303 1042.7 534 100.0
Sabra06G0009800 Salix brachista HOM05D004898 ORTHO05D005574 1.5e-284 982.2 534 93.8
Manes.08G069675 Manihot esculenta HOM05D004898 ORTHO05D005574 6.2e-262 907.1 533 87.6
Dinv07411 Davidia involucrata HOM05D004898 ORTHO05D005574 3.9e-256 887.9 535 84.3
MD05G1358600 Malus domestica HOM05D004898 ORTHO05D005574 3.7e-254 881.3 527 85.6
TWI38G1092 Tripterygium wilfordii HOM05D004898 ORTHO05D005574 1.2e-252 876.3 535 83.7
Ciclev10014770m.g Citrus clementina HOM05D004898 ORTHO05D005574 2.9e-251 871.7 533 83.5
Atru.chr1.2413_Atru.chr1.2414 Acer truncatum HOM05D004898 ORTHO05D005574 2.5e-250 868.6 531 82.5
Prupe.4G009500 Prunus persica HOM05D004898 ORTHO05D005574 4.2e-250 867.8 530 84.0
FvH4_3g00891 Fragaria vesca HOM05D004898 ORTHO05D005574 2.7e-249 865.1 530 82.3
FAN21G2703 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.1e-247 859.8 530 81.5
Oeu052872.1 Olea europaea HOM05D004898 ORTHO05D005574 1.3e-246 856.3 531 83.1
RcHm_v2.0_Chr5g0001371 Rosa chinensis HOM05D004898 ORTHO05D005574 2.2e-246 855.5 531 81.4
Eucgr.E03924 Eucalyptus grandis HOM05D004898 ORTHO05D005574 4.8e-246 854.4 539 81.3
Rhsim13G0144800 Rhododendron simsii HOM05D004898 ORTHO05D005574 1.4e-245 852.8 524 81.5
QL05p069311 Quercus lobata HOM05D004898 ORTHO05D005574 1.1e-242 843.2 534 80.7
Actinidia39792 Actinidia chinensis HOM05D004898 ORTHO05D005574 5.5e-242 840.9 524 80.0
Cfa000089 Carpinus fangiana HOM05D004898 ORTHO05D005574 4.7e-241 837.8 524 79.6
CiPaw.09G103400 Carya illinoinensis HOM05D004898 ORTHO05D005574 6.7e-240 833.9 524 79.6
Thecc.06G234600 Theobroma cacao HOM05D004898 ORTHO05D005574 1.5e-239 832.8 532 79.7
Nn1g03284 Nelumbo nucifera HOM05D004898 ORTHO05D005574 3.3e-239 831.6 529 80.3
Cfa000090 Carpinus fangiana HOM05D004898 ORTHO05D005574 9.7e-239 830.1 516 81.0
CANSAT56G0760 Cannabis sativa HOM05D004898 ORTHO05D005574 2.8e-238 828.6 528 79.4
MD10G1333000 Malus domestica HOM05D004898 ORTHO05D005574 6.5e-235 817.4 525 78.1
Haze_06951 Corylus avellana HOM05D004898 ORTHO05D005574 3.2e-234 815.1 529 78.6
Duzib160G0749 Durio zibethinus HOM05D004898 ORTHO05D005574 2.7e-233 812.0 530 77.7
GSVIVG01003326001 Vitis vinifera HOM05D004898 ORTHO05D005574 1.8e-232 809.3 463 86.6
Lsat_1_v5_gn_7_13740 Lactuca sativa HOM05D004898 ORTHO05D005574 8.8e-232 807.0 516 79.5
CAN.G1186.45 Capsicum annuum HOM05D004898 ORTHO05D005574 2.0e-231 805.8 543 76.6
SGA_v2.0_scaffold7G03752 Striga asiatica HOM05D004898 ORTHO05D005574 2.6e-231 805.4 526 78.5
AUR62012806 Chenopodium quinoa HOM05D004898 ORTHO05D005574 3.3e-231 805.1 514 79.2
Prupe.4G009400 Prunus persica HOM05D004898 ORTHO05D005574 4.4e-231 804.7 519 78.8
BcaC03g16972 Brassica carinata HOM05D004898 ORTHO05D005574 1.7e-230 802.7 537 77.1
C02p48760 Brassica napus HOM05D004898 ORTHO05D005574 1.7e-230 802.7 537 77.1
BolC2t10970H Brassica oleracea HOM05D004898 ORTHO05D005574 1.7e-230 802.7 537 77.1
Lj1A1241T64 Lonicera japonica HOM05D004898 ORTHO05D005574 2.8e-230 802.0 524 78.8
A02p31430 Brassica napus HOM05D004898 ORTHO05D005574 6.3e-230 800.8 537 77.3
Gohir.A06G153700 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.2e-230 800.4 525 76.0
Gohir.D06G160500 Gossypium hirsutum HOM05D004898 ORTHO05D005574 8.2e-230 800.4 525 76.2
RcHm_v2.0_Chr5g0001361 Rosa chinensis HOM05D004898 ORTHO05D005574 1.4e-229 799.7 534 76.8
A06p44970 Brassica napus HOM05D004898 ORTHO05D005574 2.4e-229 798.9 544 75.4
Peaxi162Scf00352g00047 Petunia axillaris HOM05D004898 ORTHO05D005574 9.1e-229 797.0 515 80.2
Cc09_g00800 Coffea canephora HOM05D004898 ORTHO05D005574 1.2e-228 796.6 462 85.7
BolC7t43662H Brassica oleracea HOM05D004898 ORTHO05D005574 2.0e-228 795.8 544 75.0
FvH4_3g00890 Fragaria vesca HOM05D004898 ORTHO05D005574 2.0e-228 795.8 531 75.7
CARHR173790 Cardamine hirsuta HOM05D004898 ORTHO05D005574 2.6e-228 795.4 542 76.0
C07p31210 Brassica napus HOM05D004898 ORTHO05D005574 3.5e-228 795.0 544 74.8
CSS0045138 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.9e-228 794.3 537 75.8
EL10Ac8g20211 Beta vulgaris HOM05D004898 ORTHO05D005574 7.7e-228 793.9 519 77.8
BcaC06g31373 Brassica carinata HOM05D004898 ORTHO05D005574 7.7e-228 793.9 541 75.4
MBI19_g06154_MAGBIO Magnolia biondii HOM05D004898 ORTHO05D005574 1.3e-227 793.1 527 76.3
PSO541G1832 Papaver somniferum HOM05D004898 ORTHO05D005574 1.3e-227 793.1 533 75.0
FAN21G0575 Fragaria x ananassa HOM05D004898 ORTHO05D005574 1.7e-227 792.7 531 75.3
AL8G10410 Arabidopsis lyrata HOM05D004898 ORTHO05D005574 3.8e-227 791.6 543 75.5
Carub.0008s0022 Capsella rubella HOM05D004898 ORTHO05D005574 8.5e-227 790.4 544 75.7
BraA02t08145Z Brassica rapa HOM05D004898 ORTHO05D005574 1.9e-226 789.3 537 76.2
Thhalv10000848m.g Eutrema salsugineum HOM05D004898 ORTHO05D005574 1.9e-226 789.3 535 76.1
Sp2g12290 Schrenkiella parvula HOM05D004898 ORTHO05D005574 5.5e-226 787.7 542 75.6
Gorai.010G187200 Gossypium raimondii HOM05D004898 ORTHO05D005574 7.2e-226 787.3 518 76.3
Solyc11g012360.2 Solanum lycopersicum HOM05D004898 ORTHO05D005574 9.4e-226 786.9 546 74.2
BraA06t27368Z Brassica rapa HOM05D004898 ORTHO05D005574 2.7e-225 785.4 533 75.6
THA.LOC104806731 Tarenaya hassleriana HOM05D004898 ORTHO05D005574 2.7e-225 785.4 541 76.2
AT5G47560 Arabidopsis thaliana HOM05D004898 ORTHO05D005574 6.1e-225 784.3 543 75.1
FAN25G1838 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.0e-225 783.9 520 77.3
Sed0020280 Sechium edule HOM05D004898 ORTHO05D005574 8.0e-225 783.9 535 74.4
Hund23404 Selenicereus undatus HOM05D004898 ORTHO05D005574 2.3e-224 782.3 524 76.3
Aa31LG9G5480 Aethionema arabicum HOM05D004898 ORTHO05D005574 4.0e-224 781.6 523 77.4
BcaC04g21615 Brassica carinata HOM05D004898 ORTHO05D005574 4.0e-224 781.6 541 74.7
C09p29850 Brassica napus HOM05D004898 ORTHO05D005574 4.0e-224 781.6 541 74.7
BolC9t55848H Brassica oleracea HOM05D004898 ORTHO05D005574 4.0e-224 781.6 541 74.7
A09p23110 Brassica napus HOM05D004898 ORTHO05D005574 5.7e-223 777.7 540 74.4
MELO3C025563.2 Cucumis melo HOM05D004898 ORTHO05D005574 2.8e-222 775.4 535 73.5
ClCG01G010280 Citrullus lanatus HOM05D004898 ORTHO05D005574 4.8e-222 774.6 534 73.6
BraA09t37914Z Brassica rapa HOM05D004898 ORTHO05D005574 8.2e-222 773.9 540 74.1
Gohir.D10G008600 Gossypium hirsutum HOM05D004898 ORTHO05D005574 1.1e-221 773.5 528 75.0
BcaC06g34240 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-221 772.3 568 71.1
DCAR_030865 Daucus carota HOM05D004898 ORTHO05D005574 5.9e-220 767.7 525 75.4
ECA240G2526 Erigeron canadensis HOM05D004898 ORTHO05D005574 5.9e-220 767.7 479 80.8
PSO675G0622 Papaver somniferum HOM05D004898 ORTHO05D005574 5.9e-220 767.7 511 75.7
CsaV3_1G017190 Cucumis sativus L. HOM05D004898 ORTHO05D005574 1.5e-218 763.1 535 72.7
Gohir.A10G008900 Gossypium hirsutum HOM05D004898 ORTHO05D005574 3.2e-218 761.9 532 73.3
HPP92_022800 Vanilla planifolia HOM05D004898 ORTHO05D005574 3.2e-218 761.9 521 73.9
GSVIVG01006080001 Vitis vinifera HOM05D004898 ORTHO05D005574 5.5e-218 761.1 436 86.9
Glyma.09G010700 Glycine max HOM05D004898 ORTHO05D005574 2.1e-217 759.2 530 71.1
Glyma.15G115200 Glycine max HOM05D004898 ORTHO05D005574 2.1e-217 759.2 534 70.4
HanXRQChr05g0129101 Helianthus annuus HOM05D004898 ORTHO05D005574 4.7e-217 758.1 516 75.2
Sc05g0009650 Simmondsia chinensis HOM05D004898 ORTHO05D005574 8.8e-216 753.8 528 74.2
PGR042G1052 Punica granatum HOM05D004898 ORTHO05D005574 3.4e-215 751.9 524 75.0
Nitab4.5_0000143g0160 Nicotiana tabacum HOM05D004898 ORTHO05D005574 9.8e-215 750.4 515 75.5
PGSC0003DMG400013282 Solanum tuberosum HOM05D004898 ORTHO05D005574 5.4e-213 744.6 482 78.0
Sopen11g007110 Solanum pennellii HOM05D004898 ORTHO05D005574 1.6e-212 743.0 482 77.4
VMungo0540G1349 Vigna mungo HOM05D004898 ORTHO05D005574 1.6e-212 743.0 531 69.5
Psat1g175640 Pisum sativum HOM05D004898 ORTHO05D005574 2.0e-212 742.7 531 68.5
Lalb_Chr18g0057021 Lupinus albus HOM05D004898 ORTHO05D005574 5.9e-212 741.1 531 69.1
Lj6g0016962 Lotus japonicus HOM05D004898 ORTHO05D005574 6.5e-211 737.6 533 69.8
Gorai.011G009400 Gossypium raimondii HOM05D004898 ORTHO05D005574 8.6e-211 737.3 528 72.5
arahy.Tifrunner.gnm1.ann1.ZF0ICG Arachis hypogaea HOM05D004898 ORTHO05D005574 1.9e-210 736.1 520 70.8
Psat4g004680 Pisum sativum HOM05D004898 ORTHO05D005574 1.9e-210 736.1 537 69.8
Medtr4g133230 Medicago truncatula HOM05D004898 ORTHO05D005574 4.2e-210 734.9 539 69.0
arahy.Tifrunner.gnm1.ann1.GM6TB3 Arachis hypogaea HOM05D004898 ORTHO05D005574 1.2e-209 733.4 536 68.8
Lj4g0027564 Lotus japonicus HOM05D004898 ORTHO05D005574 3.6e-209 731.9 534 69.7
Medtr2g026030 Medicago truncatula HOM05D004898 ORTHO05D005574 1.0e-208 730.3 520 68.5
COL.COLO4_31899 Corchorus olitorius HOM05D004898 ORTHO05D005574 4.0e-208 728.4 533 71.3
arahy.Tifrunner.gnm1.ann1.L2E3EJ Arachis hypogaea HOM05D004898 ORTHO05D005574 3.4e-207 725.3 538 68.8
arahy.Tifrunner.gnm1.ann1.5M9JPT Arachis hypogaea HOM05D004898 ORTHO05D005574 1.4e-205 719.9 538 68.2
Actinidia34018 Actinidia chinensis HOM05D004898 ORTHO05D005574 3.0e-200 702.2 452 79.0
Phvul.006G142700 Phaseolus vulgaris HOM05D004898 ORTHO05D005574 2.0e-199 699.5 460 73.7
unitig_748.g7600 Utricularia gibba HOM05D004898 ORTHO05D005574 4.6e-196 688.3 456 73.9
Os09g0484900 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 1.6e-193 679.9 534 63.5
Zm00001eb316570 Zea mays HOM05D004898 ORTHO05D005574 3.9e-187 658.7 530 61.5
VMungo0540G0197 Vigna mungo HOM05D004898 ORTHO05D005574 7.3e-186 654.4 526 62.9
SalBow8G1501 Salvia bowleyana HOM05D004898 ORTHO05D005574 1.2e-185 653.7 439 76.1
vmacro03635 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 6.8e-184 647.9 391 81.8
Os08g0503700 Oryza sativa ssp. japonica HOM05D004898 ORTHO05D005574 3.2e-181 639.0 540 60.9
Zm00001eb158920 Zea mays HOM05D004898 ORTHO05D005574 2.7e-180 636.0 536 60.4
Aqoxy4G02191 Aquilegia oxysepala HOM05D004898 ORTHO05D005574 1.0e-179 634.0 388 82.0
TPR.G30453 Trifolium pratense HOM05D004898 ORTHO05D005574 1.6e-177 626.7 521 61.0
CSS0031856 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 5.4e-173 611.7 386 78.8
TPR.G30452 Trifolium pratense HOM05D004898 ORTHO05D005574 1.0e-171 607.4 533 60.8
Ca_00729_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 1.5e-170 603.6 460 64.6
TPR.G5945 Trifolium pratense HOM05D004898 ORTHO05D005574 1.9e-162 576.6 391 71.9
Ca_21041_v3 Cicer arietinum L. HOM05D004898 ORTHO05D005574 5.8e-159 565.1 382 71.7
MD10G1332900 Malus domestica HOM05D004898 ORTHO05D005574 4.3e-154 548.9 361 75.6
Migut.M01405 Erythranthe guttata HOM05D004898 ORTHO05D005574 3.8e-150 535.8 317 83.3
AUR62021848 Chenopodium quinoa HOM05D004898 ORTHO05D005574 1.9e-141 506.9 343 75.8
SEGI_04913 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 2.4e-136 490.0 325 73.5
AagrBONN_evm.TU.Sc2ySwM_117.1091 Anthoceros agrestis HOM05D004898 ORTHO05D005574 3.9e-131 472.6 484 50.0
SMO118G0209 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 3.9e-131 472.6 471 50.1
SMO270G0136 Selaginella moellendorffii HOM05D004898 ORTHO05D005574 1.9e-125 453.8 455 50.1
Pp3c15_15560 Physcomitrium patens HOM05D004898 ORTHO05D005574 1.8e-115 420.6 559 41.5
Eucgr.L01902 Eucalyptus grandis HOM05D004898 ORTHO05D005574 3.6e-108 396.4 226 88.5
Mapoly0082s0008 Marchantia polymorpha HOM05D004898 ORTHO05D005574 6.7e-107 392.1 541 39.4
Nitab4.5_0003626g0040 Nicotiana tabacum HOM05D004898 ORTHO05D005574 5.0e-94 349.4 258 73.6
BcaC06g31368 Brassica carinata HOM05D004898 ORTHO05D005574 8.3e-81 305.4 194 77.3
FAN22G1464 Fragaria x ananassa HOM05D004898 ORTHO05D005574 8.9e-67 258.8 194 70.6
Glyma.07G265900 Glycine max HOM05D004898 ORTHO05D005574 3.4e-66 256.9 180 72.2
BcaC06g31369 Brassica carinata HOM05D004898 ORTHO05D005574 2.4e-64 250.8 151 82.8
Glyma.09G010800 Glycine max HOM05D004898 ORTHO05D005574 3.8e-57 226.9 171 64.3
MD10G1332700 Malus domestica HOM05D004898 ORTHO05D005574 1.2e-47 195.3 160 66.9
vmacro03636 Vaccinium macrocarpon HOM05D004898 ORTHO05D005574 2.7e-47 194.1 137 73.7
TPR.G39985 Trifolium pratense HOM05D004898 ORTHO05D005574 6.0e-47 193.0 159 59.7
CSS0039577 Camellia sinensis var. sinensis HOM05D004898 ORTHO05D005574 1.6e-44 184.9 150 68.0
TPR.G16605 Trifolium pratense HOM05D004898 ORTHO05D005574 6.0e-39 166.4 151 60.9
CiPaw.02G047500 Carya illinoinensis HOM05D004898 ORTHO05D005574 5.6e-37 159.8 97 83.5
Oeu026504.1 Olea europaea HOM05D004898 ORTHO05D005574 4.9e-33 146.7 149 55.7
SEGI_30483 Sequoiadendron giganteum HOM05D004898 ORTHO05D005574 1.4e-27 128.6 110 61.8
TPR.G14633 Trifolium pratense HOM05D004898 ORTHO05D005574 4.3e-21 107.1 71 71.8
Cre06.g251650 Chlamydomonas reinhardtii HOM05D004898 ORTHO05D005574 6.3e-20 103.2 462 25.3
Cfa025410 Carpinus fangiana HOM05D004898 ORTHO05D005574 8.2e-20 102.8 491 24.0
MD10G1333600 Malus domestica HOM05D004898 ORTHO05D005574 8.2e-20 102.8 74 71.6
SEGI_07134 Sequoiadendron giganteum HOM05D001687 ORTHO05D001608 3.9e-14 84.0 67 61.2
SEGI_26459 Sequoiadendron giganteum HOM05D000824 ORTHO05D001608 3.9e-14 84.0 67 61.2
VMungo1383G2427 Vigna mungo HOM05D035140 ORTHO05D005574 2.6e-10 71.2 46 71.7
Zm00001eb349350 Zea mays HOM05D004186 ORTHO05D006965 9.4e-08 62.8 72 48.6
Zm00001eb361420 Zea mays HOM05D032919 ORTHO05D005574 9.4e-08 62.8 50 60.0
Zm00001eb140760 Zea mays HOM05D004186 ORTHO05D003061 1.0e-06 59.3 54 57.4


User provided reference genes

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