Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G252300 Populus trichocarpa HOM05D006770 ORTHO05D008356 2.2e-288 995.0 508 100.0
Sabra05G0195800 Salix brachista HOM05D006770 ORTHO05D008356 8.3e-264 913.3 503 92.8
Thecc.08G061300 Theobroma cacao HOM05D006770 ORTHO05D008356 3.5e-198 695.3 512 69.3
Atru.chr13.120 Acer truncatum HOM05D006770 ORTHO05D008356 1.8e-197 693.0 491 72.1
Manes.17G081600 Manihot esculenta HOM05D006770 ORTHO05D008356 4.5e-193 678.3 503 69.8
Duzib041G0267 Durio zibethinus HOM05D006770 ORTHO05D008356 8.5e-192 674.1 494 68.8
Haze_22817 Corylus avellana HOM05D006770 ORTHO05D008356 1.2e-190 670.2 514 68.1
Manes.05G095800 Manihot esculenta HOM05D006770 ORTHO05D008356 9.7e-188 660.6 532 65.2
TWI79G0343 Tripterygium wilfordii HOM05D006770 ORTHO05D008356 9.7e-188 660.6 500 68.0
QL02p014697 Quercus lobata HOM05D006770 ORTHO05D008356 2.8e-187 659.1 512 68.0
CiPaw.07G136700 Carya illinoinensis HOM05D006770 ORTHO05D008356 1.4e-186 656.8 511 66.9
COL.COLO4_36416 Corchorus olitorius HOM05D006770 ORTHO05D008356 1.5e-185 653.3 515 65.2
Gohir.A11G329900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.0e-184 650.6 501 65.5
Gorai.006G274800 Gossypium raimondii HOM05D006770 ORTHO05D008356 6.5e-184 647.9 504 64.5
Gorai.004G294200 Gossypium raimondii HOM05D006770 ORTHO05D008356 5.5e-183 644.8 504 64.1
CSS0047097 Camellia sinensis var. sinensis HOM05D006770 ORTHO05D008356 3.0e-181 639.0 477 68.6
RcHm_v2.0_Chr5g0066911 Rosa chinensis HOM05D006770 ORTHO05D008356 9.1e-178 627.5 478 65.7
Gohir.D08G007000 Gossypium hirsutum HOM05D006770 ORTHO05D008356 1.5e-177 626.7 480 65.4
FAN18G3713 Fragaria x ananassa HOM05D006770 ORTHO05D008356 2.6e-177 625.9 452 67.9
FvH4_5g25440 Fragaria vesca HOM05D006770 ORTHO05D008356 4.5e-177 625.2 452 67.9
Ciclev10000935m.g Citrus clementina HOM05D006770 ORTHO05D008356 1.0e-176 624.0 501 64.5
FAN08G2065 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.0e-176 624.0 458 67.0
FAN13G3072 Fragaria x ananassa HOM05D006770 ORTHO05D008356 1.7e-176 623.2 458 66.6
Cfa014101 Carpinus fangiana HOM05D006770 ORTHO05D008356 4.2e-175 618.6 397 76.8
Prupe.5G010100 Prunus persica HOM05D006770 ORTHO05D008356 9.4e-175 617.5 466 67.4
Gorai.009G456100 Gossypium raimondii HOM05D006770 ORTHO05D008356 4.4e-172 608.6 504 61.7
Ca_25485_v3 Cicer arietinum L. HOM05D006770 ORTHO05D008356 5.7e-172 608.2 479 64.1
MD00G1136800 Malus domestica HOM05D006770 ORTHO05D008356 9.7e-172 607.4 452 66.8
Gohir.A01G231900 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.7e-171 605.5 501 62.1
THA.LOC104813750 Tarenaya hassleriana HOM05D006770 ORTHO05D008356 6.3e-171 604.7 492 63.6
Atru.chr13.118 Acer truncatum HOM05D006770 ORTHO05D008356 1.4e-170 603.6 491 65.2
Glyma.20G013900 Glycine max HOM05D006770 ORTHO05D008356 4.1e-170 602.1 484 63.6
CANSAT64G1545 Cannabis sativa HOM05D006770 ORTHO05D008356 1.2e-169 600.5 493 62.7
Nn5g30983 Nelumbo nucifera HOM05D006770 ORTHO05D008356 1.6e-169 600.1 492 64.2
Glyma.07G217000 Glycine max HOM05D006770 ORTHO05D008356 4.5e-169 598.6 482 62.7
TAR625G0814 Trochodendron aralioides HOM05D006770 ORTHO05D008356 5.0e-168 595.1 487 63.7
Medtr4g084940 Medicago truncatula HOM05D006770 ORTHO05D008356 2.7e-166 589.3 482 62.2
VMungo0251G0866 Vigna mungo HOM05D006770 ORTHO05D008356 6.1e-166 588.2 450 66.2
Nitab4.5_0001225g0180 Nicotiana tabacum HOM05D006770 ORTHO05D008356 5.2e-165 585.1 475 63.8
PSO541G3292 Papaver somniferum HOM05D006770 ORTHO05D008356 5.2e-165 585.1 493 60.6
Phvul.001G002700 Phaseolus vulgaris HOM05D006770 ORTHO05D008356 5.2e-165 585.1 481 62.2
Lalb_Chr05g0219451 Lupinus albus HOM05D006770 ORTHO05D008356 6.7e-165 584.7 456 64.7
PGR031G0937 Punica granatum HOM05D006770 ORTHO05D008356 5.7e-164 581.6 464 65.3
Nitab4.5_0001583g0140 Nicotiana tabacum HOM05D006770 ORTHO05D008356 9.7e-164 580.9 494 62.6
Sc02g0009170 Simmondsia chinensis HOM05D006770 ORTHO05D008356 9.7e-164 580.9 461 64.0
Gohir.D08G275542 Gossypium hirsutum HOM05D006770 ORTHO05D008356 2.8e-163 579.3 424 67.5
Gohir.A13G000201 Gossypium hirsutum HOM05D006770 ORTHO05D008356 3.7e-163 578.9 424 67.5
PGSC0003DMG400021117 Solanum tuberosum HOM05D006770 ORTHO05D008356 3.7e-163 578.9 469 63.5
Aqoxy6G01625 Aquilegia oxysepala HOM05D006770 ORTHO05D008356 4.8e-163 578.6 479 61.8
AUR62040821 Chenopodium quinoa HOM05D006770 ORTHO05D008356 4.8e-163 578.6 478 61.9
PSO675G2016 Papaver somniferum HOM05D006770 ORTHO05D008356 4.8e-163 578.6 493 59.8
Oeu032124.1 Olea europaea HOM05D006770 ORTHO05D008356 6.3e-163 578.2 487 61.2
Hund01783 Selenicereus undatus HOM05D006770 ORTHO05D008356 1.1e-162 577.4 472 61.4
Rhsim13G0054100 Rhododendron simsii HOM05D006770 ORTHO05D008356 1.8e-162 576.6 498 62.4
Lj4g0024175 Lotus japonicus HOM05D006770 ORTHO05D008356 3.1e-162 575.9 442 64.7
CsaV3_1G014370 Cucumis sativus L. HOM05D006770 ORTHO05D008356 4.1e-162 575.5 493 60.4
ECA246G3919 Erigeron canadensis HOM05D006770 ORTHO05D008356 1.6e-161 573.5 465 63.9
AUR62035131 Chenopodium quinoa HOM05D006770 ORTHO05D008356 2.0e-161 573.2 465 62.2
Solyc02g070010.1 Solanum lycopersicum HOM05D006770 ORTHO05D008356 4.5e-161 572.0 461 64.4
Sopen02g019170 Solanum pennellii HOM05D006770 ORTHO05D008356 4.5e-161 572.0 484 62.0
EL10Ac1g01921 Beta vulgaris HOM05D006770 ORTHO05D008356 5.9e-161 571.6 483 60.0
MELO3C004826.2 Cucumis melo HOM05D006770 ORTHO05D008356 1.3e-160 570.5 455 64.2
TPR.G35412 Trifolium pratense HOM05D006770 ORTHO05D008356 2.9e-160 569.3 471 60.5
HanXRQChr06g0167391 Helianthus annuus HOM05D006770 ORTHO05D008356 1.5e-159 567.0 506 60.3
CAN.G79.22 Capsicum annuum HOM05D006770 ORTHO05D008356 4.2e-159 565.5 493 60.4
Cc09_g04530 Coffea canephora HOM05D006770 ORTHO05D008356 9.4e-159 564.3 484 60.1
Aa31LG2G8050 Aethionema arabicum HOM05D006770 ORTHO05D008356 1.6e-158 563.5 461 62.7
CAN.G79.18 Capsicum annuum HOM05D006770 ORTHO05D008356 6.1e-158 561.6 497 59.8
Gorai.007G379700 Gossypium raimondii HOM05D006770 ORTHO05D008356 1.0e-157 560.8 445 63.8
Psat7g128200 Pisum sativum HOM05D006770 ORTHO05D008356 2.6e-156 556.2 468 59.6
Sc02g0009150 Simmondsia chinensis HOM05D006770 ORTHO05D008356 5.7e-156 555.1 482 59.5
CDE04G3028 Ceratophyllum demersum HOM05D006770 ORTHO05D008356 2.2e-155 553.1 465 60.9
Lsat_1_v5_gn_3_16821 Lactuca sativa HOM05D006770 ORTHO05D008356 1.6e-153 547.0 455 62.2
Thhalv10004104m.g Eutrema salsugineum HOM05D006770 ORTHO05D008356 5.0e-152 542.0 484 60.1
Dinv31957 Davidia involucrata HOM05D006770 ORTHO05D008356 1.4e-149 533.9 354 73.7
SalBow7G3490 Salvia bowleyana HOM05D006770 ORTHO05D008356 2.3e-149 533.1 433 62.1
BcaC06g31269 Brassica carinata HOM05D006770 ORTHO05D008356 1.5e-148 530.4 470 59.8
AL5G10970 Arabidopsis lyrata HOM05D006770 ORTHO05D008356 2.0e-148 530.0 490 58.2
DCAR_024417 Daucus carota HOM05D006770 ORTHO05D008356 5.7e-148 528.5 474 59.7
AT2G01860 Arabidopsis thaliana HOM05D006770 ORTHO05D008356 1.3e-147 527.3 464 60.1
Sp2g13280 Schrenkiella parvula HOM05D006770 ORTHO05D008356 3.7e-147 525.8 485 58.6
Ah.00g000990 Amaranthus hybridus HOM05D006770 ORTHO05D008356 8.3e-147 524.6 483 56.7
Migut.M00215 Erythranthe guttata HOM05D006770 ORTHO05D008356 4.1e-146 522.3 480 57.9
BolC7t43787H Brassica oleracea HOM05D006770 ORTHO05D008356 2.7e-145 519.6 476 57.8
Carub.0005s0082 Capsella rubella HOM05D006770 ORTHO05D008356 2.7e-145 519.6 452 60.8
BcaC06g34103 Brassica carinata HOM05D006770 ORTHO05D008356 1.7e-144 516.9 476 58.2
CARHR144420 Cardamine hirsuta HOM05D006770 ORTHO05D008356 1.7e-144 516.9 481 58.2
C07p32660 Brassica napus HOM05D006770 ORTHO05D008356 2.9e-144 516.2 476 58.0
A06p43970 Brassica napus HOM05D006770 ORTHO05D008356 6.1e-142 508.4 472 58.3
BraA06t27272Z Brassica rapa HOM05D006770 ORTHO05D008356 4.4e-140 502.3 472 57.8
Peaxi162Scf00670g00024 Petunia axillaris HOM05D006770 ORTHO05D008356 9.8e-140 501.1 467 60.2
Actinidia23351 Actinidia chinensis HOM05D006770 ORTHO05D008356 9.2e-138 494.6 453 59.8
vmacro02830 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 5.8e-132 475.3 337 70.0
ATR0807G062 Amborella trichopoda HOM05D006770 ORTHO05D008356 2.0e-124 450.3 508 49.8
HPP92_007114 Vanilla planifolia HOM05D006770 ORTHO05D008356 2.2e-123 446.8 450 52.9
MD16G1284100 Malus domestica HOM05D006770 ORTHO05D008356 1.0e-120 438.0 396 58.6
SGA_v2.0_scaffold538G52786 Striga asiatica HOM05D006770 ORTHO05D008356 1.4e-117 427.6 438 51.8
SGA_v2.0_scaffold476G52129 Striga asiatica HOM05D006770 ORTHO05D008356 2.0e-116 423.7 438 52.1
Lj9P204T39 Lonicera japonica HOM05D006770 ORTHO05D008356 2.1e-113 413.7 341 62.5
Zm00001eb391890 Zea mays HOM05D006770 ORTHO05D008356 4.8e-110 402.5 420 52.4
SEGI_37300 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 3.8e-107 392.9 452 46.7
Os02g0118000 Oryza sativa ssp. japonica HOM05D006770 ORTHO05D008356 6.0e-105 385.6 400 51.5
Sed0018053 Sechium edule HOM05D006770 ORTHO05D008356 2.4e-98 363.6 357 57.4
Gohir.D11G349500 Gossypium hirsutum HOM05D006770 ORTHO05D008356 4.8e-86 322.8 219 70.3
Gohir.A06G000350 Gossypium hirsutum HOM05D006770 ORTHO05D008356 5.0e-75 286.2 185 72.4
SEGI_07142 Sequoiadendron giganteum HOM05D006770 ORTHO05D008356 1.4e-74 284.6 388 40.7
Actinidia12910 Actinidia chinensis HOM05D006770 ORTHO05D008356 2.1e-73 280.8 335 50.1
ClCG01G012950 Citrullus lanatus HOM05D006770 ORTHO05D008356 1.9e-58 231.1 193 63.2
Gohir.D02G000400 Gossypium hirsutum HOM05D006770 ORTHO05D008356 7.0e-45 186.0 184 54.9
CAN.G733.12 Capsicum annuum HOM05D006770 ORTHO05D008356 1.3e-43 181.8 245 44.5
AagrBONN_evm.TU.Sc2ySwM_117.3058 Anthoceros agrestis HOM05D006770 ORTHO05D008356 8.0e-41 172.6 270 37.0
CAN.G332.6 Capsicum annuum HOM05D006770 ORTHO05D008356 5.4e-29 133.3 106 59.4
VMungo0720G0800 Vigna mungo HOM05D006770 ORTHO05D008356 5.0e-27 126.7 134 53.7
Mapoly0166s0014 Marchantia polymorpha HOM05D006770 ORTHO05D008356 1.0e-19 102.4 229 28.8
VMungo0331G1801 Vigna mungo HOM05D002295 ORTHO05D008356 3.3e-18 97.4 89 56.2
vmacro02831 Vaccinium macrocarpon HOM05D006770 ORTHO05D008356 8.9e-16 89.4 134 50.0
Pp3c13_18720 Physcomitrium patens HOM05D006770 ORTHO05D008356 1.2e-15 89.0 293 26.6
Pp3c13_18722 Physcomitrium patens HOM05D006770 ORTHO05D008356 1.2e-15 89.0 293 26.6
CBR_g51330 Chara braunii HOM05D009772 ORTHO05D000353 2.4e-13 81.3 299 23.1
AT5G25630 Arabidopsis thaliana HOM05D003689 ORTHO05D003950 1.9e-10 71.6 121 30.6
Carub.0006s2350 Capsella rubella HOM05D003689 ORTHO05D003950 1.9e-10 71.6 124 30.6
Sp2g21900 Schrenkiella parvula HOM05D003689 ORTHO05D003950 2.5e-10 71.2 124 30.6
CARHR187690 Cardamine hirsuta HOM05D003689 ORTHO05D003950 4.3e-10 70.5 124 30.6
TAR381G0468 Trochodendron aralioides HOM05D006770 ORTHO05D008356 9.5e-10 69.3 97 46.4
CDE04G3773 Ceratophyllum demersum HOM05D003689 ORTHO05D003950 2.3e-08 64.7 116 29.3
Medtr1g008310 Medicago truncatula HOM05D003689 ORTHO05D003950 2.3e-08 64.7 117 27.4
HPP92_006127 Vanilla planifolia HOM05D002479 ORTHO05D002675 3.1e-08 64.3 147 25.9
DCAR_017247 Daucus carota HOM05D000891 ORTHO05D000761 1.2e-07 62.4 148 27.0
Potri.009G092100 Populus trichocarpa HOM05D003056 ORTHO05D003422 1.2e-07 62.4 167 31.1
ATR0315G024 Amborella trichopoda HOM05D003689 ORTHO05D003950 2.6e-07 61.2 101 30.7
FvH4_2g04590 Fragaria vesca HOM05D003056 ORTHO05D003422 2.6e-07 61.2 138 29.0
FAN15G3015 Fragaria x ananassa HOM05D003056 ORTHO05D003422 2.6e-07 61.2 138 29.0
Prupe.8G139200 Prunus persica HOM05D003056 ORTHO05D003422 3.4e-07 60.8 155 27.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 4.4e-07 60.5 118 26.3
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 4.4e-07 60.5 118 26.3
HPP92_002379 Vanilla planifolia HOM05D005862 ORTHO05D007731 5.8e-07 60.1 200 23.5
Sabra16G0186300 Salix brachista HOM05D003056 ORTHO05D003422 1.3e-06 58.9 166 28.9
Dinv17441 Davidia involucrata HOM05D005362 ORTHO05D006895 1.7e-06 58.5 398 22.1
Peaxi162Scf00201g00422 Petunia axillaris HOM05D005362 ORTHO05D006895 1.7e-06 58.5 271 23.6
FvH4_1g00580 Fragaria vesca HOM05D006258 ORTHO05D007961 2.2e-06 58.2 167 24.0
FAN28G2306 Fragaria x ananassa HOM05D006258 ORTHO05D007961 2.2e-06 58.2 167 24.0
BcaB04g19771 Brassica carinata HOM05D003689 ORTHO05D003950 2.9e-06 57.8 124 26.6
FAN24G1521 Fragaria x ananassa HOM05D003056 ORTHO05D003422 2.9e-06 57.8 138 28.3
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 3.7e-06 57.4 133 26.3
Migut.B00504 Erythranthe guttata HOM05D005362 ORTHO05D006895 3.7e-06 57.4 249 23.7
Nitab4.5_0003410g0050 Nicotiana tabacum HOM05D000891 ORTHO05D000761 3.7e-06 57.4 143 27.3
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.9e-06 57.0 199 23.6
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.9e-06 57.0 199 23.6
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 4.9e-06 57.0 133 26.3
FAN26G2355 Fragaria x ananassa HOM05D006258 ORTHO05D007961 4.9e-06 57.0 167 24.0
MD10G1101600 Malus domestica HOM05D003056 ORTHO05D003422 4.9e-06 57.0 144 27.8
RcHm_v2.0_Chr6g0254201 Rosa chinensis HOM05D003056 ORTHO05D003422 4.9e-06 57.0 138 28.3
Potri.001G297300 Populus trichocarpa HOM05D003056 ORTHO05D003422 6.4e-06 56.6 237 27.0


User provided reference genes

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