Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.7e-244 848.2 423 100.0
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 4.8e-233 810.8 423 95.0
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 1.6e-223 779.2 426 90.4
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 2.3e-203 712.2 418 83.0
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 1.6e-199 699.5 426 80.3
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 3.3e-197 691.8 417 81.3
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 1.8e-195 686.0 421 77.9
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.2e-194 683.3 423 80.1
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.5e-194 682.9 423 79.9
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.4e-194 681.4 423 79.7
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.3e-193 679.9 423 79.4
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 1.4e-192 676.4 424 76.4
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 1.7e-190 669.5 434 77.6
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 3.0e-190 668.7 404 78.2
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.9e-190 668.3 421 77.0
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 6.6e-190 667.5 412 78.4
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 6.6e-190 667.5 399 79.7
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 1.1e-189 666.8 429 75.8
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 5.6e-189 664.5 421 75.3
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 3.6e-188 661.8 413 77.5
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 4.7e-188 661.4 399 79.2
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 8.1e-188 660.6 415 76.1
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 6.8e-187 657.5 439 73.8
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 2.6e-186 655.6 416 76.4
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.4e-186 655.2 423 74.9
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 3.4e-186 655.2 415 76.4
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.4e-186 655.2 399 78.9
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 9.9e-186 653.7 418 75.1
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 2.2e-185 652.5 423 75.4
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.9e-185 652.1 389 79.9
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 3.7e-185 651.7 414 75.6
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 6.4e-185 651.0 423 74.5
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 1.1e-184 650.2 413 76.8
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 3.2e-184 648.7 418 74.9
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 7.1e-184 647.5 413 76.5
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 9.2e-184 647.1 412 76.0
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 9.2e-184 647.1 420 75.2
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-183 646.7 420 73.8
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.6e-183 646.4 426 73.9
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 2.1e-183 646.0 412 76.5
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 2.7e-183 645.6 408 76.2
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 4.6e-183 644.8 412 75.0
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 7.8e-183 644.0 420 74.3
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 7.8e-183 644.0 414 74.9
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 1.0e-182 643.7 422 73.2
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.3e-182 643.3 412 75.7
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 3.0e-182 642.1 425 73.6
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 3.9e-182 641.7 417 74.3
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 5.1e-182 641.3 417 74.3
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 5.1e-182 641.3 417 74.3
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 6.6e-182 641.0 417 74.3
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 8.6e-182 640.6 418 73.4
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.9e-181 639.4 423 74.5
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 1.2e-180 636.7 435 72.9
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 8.1e-180 634.0 420 72.9
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 1.8e-179 632.9 428 71.7
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 5.2e-179 631.3 413 73.1
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 1.2e-178 630.2 418 73.7
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 1.2e-178 630.2 418 72.7
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 9.9e-178 627.1 419 72.6
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 3.8e-177 625.2 424 73.8
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 3.8e-177 625.2 423 71.9
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 4.9e-177 624.8 406 72.7
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 1.4e-176 623.2 426 72.3
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 1.4e-176 623.2 422 72.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 3.2e-176 622.1 427 73.3
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 4.1e-176 621.7 424 73.6
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 3.5e-175 618.6 413 72.2
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 4.6e-175 618.2 431 70.1
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 6.0e-175 617.8 411 72.7
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 4.3e-173 611.7 424 71.9
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 2.8e-172 609.0 416 73.1
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 4.7e-172 608.2 417 71.0
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 4.7e-172 608.2 416 73.1
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 8.1e-172 607.4 422 70.9
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.4e-171 606.7 436 68.1
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.8e-171 606.3 462 66.2
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 5.2e-171 604.7 431 68.9
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 1.3e-169 600.1 410 70.5
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 1.4e-168 596.7 413 71.2
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 2.4e-168 595.9 467 64.7
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 5.4e-168 594.7 389 73.0
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 4.6e-167 591.7 413 69.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 1.7e-166 589.7 414 68.1
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 6.6e-166 587.8 399 69.2
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 1.9e-165 586.3 393 70.2
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 5.6e-165 584.7 456 65.1
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 7.3e-165 584.3 420 67.9
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 4.8e-164 581.6 396 71.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 4.9e-161 571.6 382 70.2
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 3.5e-159 565.5 338 77.8
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.3e-158 563.5 423 66.4
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.5e-157 560.1 367 73.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 8.1e-156 554.3 394 66.0
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 2.9e-153 545.8 420 65.2
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 2.9e-153 545.8 372 71.2
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 1.8e-150 536.6 423 65.2
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 8.7e-150 534.3 335 76.4
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 5.6e-149 531.6 419 61.6
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 1.4e-144 516.9 401 63.8
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.9e-144 516.5 343 72.9
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 6.7e-142 508.1 385 63.1
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 1.1e-141 507.3 394 63.5
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.7e-137 493.4 302 76.5
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 1.9e-136 490.0 421 58.7
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 5.5e-136 488.4 386 63.7
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 9.4e-136 487.6 396 59.3
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 7.9e-135 484.6 448 57.1
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 3.0e-134 482.6 329 68.1
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 3.0e-134 482.6 298 74.8
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 3.3e-133 479.2 412 57.8
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 4.3e-133 478.8 329 67.5
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.4e-131 473.0 329 66.9
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 1.9e-128 463.4 283 80.6
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.3e-116 424.1 270 77.0
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 5.7e-109 398.7 253 73.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 2.1e-103 380.2 353 52.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 1.8e-102 377.1 301 58.8
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.0e-93 347.1 274 60.9
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 1.7e-92 344.0 408 45.6
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 7.8e-90 335.1 221 69.2
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 5.4e-83 312.4 220 68.6
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 9.2e-75 285.0 201 66.7
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 3.9e-73 279.6 324 44.8
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 1.2e-71 274.6 230 62.2
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 4.7e-71 272.7 181 73.5
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 8.3e-68 261.9 231 54.5
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 4.1e-67 259.6 195 62.1
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 1.1e-59 235.0 145 77.2
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 1.4e-54 218.0 156 70.5
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.4e-43 179.5 135 58.5
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.3e-41 174.9 115 66.1
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 3.3e-40 170.2 291 38.5
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 1.9e-35 154.5 134 51.5
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 6.7e-33 146.0 156 53.2
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 8.2e-31 139.0 181 40.3
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 5.3e-30 136.3 114 57.9
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 2.7e-26 124.0 94 68.1
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 3.5e-26 123.6 386 25.9
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 6.1e-26 122.9 296 32.4
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 6.5e-20 102.8 63 68.3
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 1.7e-15 88.2 58 67.2
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.4e-14 85.1 52 71.2
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.4e-11 75.1 54 63.0
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 2.8e-07 60.8 90 40.0
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 2.8e-07 60.8 90 40.0


User provided reference genes

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