Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G249600 Populus trichocarpa HOM05D003764 ORTHO05D004356 7.1e-267 923.3 448 100.0
Sabra05G0193100 Salix brachista HOM05D003764 ORTHO05D004356 4.3e-232 807.7 448 88.2
Potri.002G011400 Populus trichocarpa HOM05D003764 ORTHO05D004356 6.3e-207 724.2 447 80.1
Sabra02G0008800 Salix brachista HOM05D003764 ORTHO05D004356 9.1e-206 720.3 451 78.9
Manes.05G135000 Manihot esculenta HOM05D003764 ORTHO05D004356 6.8e-185 651.0 434 73.0
Manes.18G006000 Manihot esculenta HOM05D003764 ORTHO05D004356 7.0e-182 641.0 437 70.9
Sabra02G0008700 Salix brachista HOM05D003764 ORTHO05D004356 6.6e-180 634.4 444 73.2
RcHm_v2.0_Chr6g0304171 Rosa chinensis HOM05D003764 ORTHO05D004356 6.3e-175 617.8 444 68.9
FAN27G3424 Fragaria x ananassa HOM05D003764 ORTHO05D004356 1.1e-174 617.1 430 70.7
FvH4_2g37560 Fragaria vesca HOM05D003764 ORTHO05D004356 2.0e-173 612.8 430 70.0
Ciclev10001182m.g Citrus clementina HOM05D003764 ORTHO05D004356 5.9e-173 611.3 440 69.3
FAN15G2102 Fragaria x ananassa HOM05D003764 ORTHO05D004356 3.8e-172 608.6 430 69.5
Haze_22757 Corylus avellana HOM05D003764 ORTHO05D004356 3.3e-171 605.5 435 69.4
QL02p013934 Quercus lobata HOM05D003764 ORTHO05D004356 1.4e-169 600.1 437 68.0
MD08G1003100 Malus domestica HOM05D003764 ORTHO05D004356 1.3e-167 593.6 453 66.2
CiPaw.07G139600 Carya illinoinensis HOM05D003764 ORTHO05D004356 1.1e-166 590.5 437 67.7
TWI56G0154 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 7.0e-166 587.8 432 65.5
Dinv31931 Davidia involucrata HOM05D003764 ORTHO05D004356 2.7e-165 585.9 444 64.2
GSVIVG01008681001 Vitis vinifera HOM05D003764 ORTHO05D004356 1.5e-163 580.1 448 64.5
Actinidia17035 Actinidia chinensis HOM05D003764 ORTHO05D004356 3.3e-163 578.9 451 64.1
Actinidia15487 Actinidia chinensis HOM05D003764 ORTHO05D004356 4.3e-163 578.6 447 64.0
Eucgr.F01754 Eucalyptus grandis HOM05D003764 ORTHO05D004356 5.8e-160 568.2 429 64.3
Nn5g30922 Nelumbo nucifera HOM05D003764 ORTHO05D004356 1.7e-159 566.6 438 64.8
Prupe.1G355100 Prunus persica HOM05D003764 ORTHO05D004356 1.7e-159 566.6 443 64.3
vmacro21825 Vaccinium macrocarpon HOM05D003764 ORTHO05D004356 6.4e-159 564.7 451 62.7
Duzib116G0421 Durio zibethinus HOM05D003764 ORTHO05D004356 3.2e-158 562.4 442 63.1
CANSAT25G3149 Cannabis sativa HOM05D003764 ORTHO05D004356 7.0e-158 561.2 431 63.6
CANSAT80G1902 Cannabis sativa HOM05D003764 ORTHO05D004356 2.3e-156 556.2 430 64.0
Thecc.08G057700 Theobroma cacao HOM05D003764 ORTHO05D004356 1.5e-155 553.5 448 61.6
PSO210G7283 Papaver somniferum HOM05D003764 ORTHO05D004356 2.5e-155 552.7 433 65.1
PGR031G0670 Punica granatum HOM05D003764 ORTHO05D004356 3.3e-155 552.4 437 62.0
ClCG11G018640 Citrullus lanatus HOM05D003764 ORTHO05D004356 7.3e-155 551.2 426 64.6
TPR.G38113 Trifolium pratense HOM05D003764 ORTHO05D004356 3.6e-154 548.9 443 60.0
Nn6g31748 Nelumbo nucifera HOM05D003764 ORTHO05D004356 6.2e-154 548.1 433 62.4
Peaxi162Scf00104g00322 Petunia axillaris HOM05D003764 ORTHO05D004356 1.4e-153 547.0 429 62.9
Nitab4.5_0003544g0010 Nicotiana tabacum HOM05D003764 ORTHO05D004356 4.0e-153 545.4 444 60.8
Glyma.04G018600 Glycine max HOM05D003764 ORTHO05D004356 1.2e-152 543.9 444 61.3
Oeu021826.1 Olea europaea HOM05D003764 ORTHO05D004356 3.4e-152 542.3 429 61.8
Nitab4.5_0000588g0130 Nicotiana tabacum HOM05D003764 ORTHO05D004356 5.8e-152 541.6 453 60.0
Oeu035836.1 Olea europaea HOM05D003764 ORTHO05D004356 7.5e-152 541.2 429 61.1
Rhsim06G0008200 Rhododendron simsii HOM05D003764 ORTHO05D004356 9.9e-152 540.8 447 60.6
Lj1g0016047 Lotus japonicus HOM05D003764 ORTHO05D004356 1.7e-151 540.0 429 62.9
VMungo1309G0568 Vigna mungo HOM05D003764 ORTHO05D004356 1.7e-151 540.0 440 60.9
COL.COLO4_03998 Corchorus olitorius HOM05D003764 ORTHO05D004356 4.9e-151 538.5 431 62.9
Cc10_g00740 Coffea canephora HOM05D003764 ORTHO05D004356 1.1e-150 537.3 432 62.3
PGSC0003DMG400009974 Solanum tuberosum HOM05D003764 ORTHO05D004356 5.4e-150 535.0 433 61.2
Ca_15440_v3 Cicer arietinum L. HOM05D003764 ORTHO05D004356 9.2e-150 534.3 438 61.0
PSO170G5992 Papaver somniferum HOM05D003764 ORTHO05D004356 1.2e-149 533.9 436 63.3
PGSC0003DMG400029320 Solanum tuberosum HOM05D003764 ORTHO05D004356 1.6e-149 533.5 429 61.3
TAR628G1614 Trochodendron aralioides HOM05D003764 ORTHO05D004356 4.6e-149 531.9 351 70.4
Nitab4.5_0000699g0100 Nicotiana tabacum HOM05D003764 ORTHO05D004356 6.0e-149 531.6 370 66.5
Glyma.06G018900 Glycine max HOM05D003764 ORTHO05D004356 2.3e-148 529.6 444 60.6
Phvul.009G021800 Phaseolus vulgaris HOM05D003764 ORTHO05D004356 5.1e-148 528.5 443 58.7
Lj4A804T73 Lonicera japonica HOM05D003764 ORTHO05D004356 6.6e-148 528.1 421 62.9
Aqoxy6G01751 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 8.6e-148 527.7 456 58.6
Medtr3g115180 Medicago truncatula HOM05D003764 ORTHO05D004356 1.1e-147 527.3 448 59.4
Solyc12g094550.2 Solanum lycopersicum HOM05D003764 ORTHO05D004356 1.5e-147 526.9 439 60.8
MBI08_g19981_MAGBIO Magnolia biondii HOM05D003764 ORTHO05D004356 5.6e-147 525.0 434 60.4
Peaxi162Scf00064g01131 Petunia axillaris HOM05D003764 ORTHO05D004356 9.5e-147 524.2 429 59.7
AT1G76250 Arabidopsis thaliana HOM05D003764 ORTHO05D004356 2.1e-146 523.1 445 59.8
Sp5g31390 Schrenkiella parvula HOM05D003764 ORTHO05D004356 2.8e-146 522.7 434 59.7
Migut.C00949 Erythranthe guttata HOM05D003764 ORTHO05D004356 3.6e-146 522.3 361 68.4
Sopen12g031450 Solanum pennellii HOM05D003764 ORTHO05D004356 3.6e-146 522.3 437 59.7
Migut.C00953 Erythranthe guttata HOM05D003764 ORTHO05D004356 8.1e-146 521.2 364 67.6
Aa31LG4G6340 Aethionema arabicum HOM05D003764 ORTHO05D004356 1.4e-145 520.4 435 59.8
arahy.Tifrunner.gnm1.ann1.I18LAP Arachis hypogaea HOM05D003764 ORTHO05D004356 1.4e-145 520.4 442 59.7
Thhalv10018564m.g Eutrema salsugineum HOM05D003764 ORTHO05D004356 1.8e-145 520.0 440 58.6
arahy.Tifrunner.gnm1.ann1.CSAI9D Arachis hypogaea HOM05D003764 ORTHO05D004356 6.8e-145 518.1 442 59.5
Gohir.A05G180000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.2e-144 517.3 440 59.5
MELO3C017015.2 Cucumis melo HOM05D003764 ORTHO05D004356 1.5e-144 516.9 428 59.8
Gorai.002G118500 Gossypium raimondii HOM05D003764 ORTHO05D004356 1.5e-144 516.9 432 60.2
Sopen04g035900 Solanum pennellii HOM05D003764 ORTHO05D004356 1.5e-144 516.9 443 58.7
Gorai.009G188300 Gossypium raimondii HOM05D003764 ORTHO05D004356 2.0e-144 516.5 440 59.5
Solyc04g082280.3 Solanum lycopersicum HOM05D003764 ORTHO05D004356 3.4e-144 515.8 436 58.9
Gohir.D01G093100 Gossypium hirsutum HOM05D003764 ORTHO05D004356 4.4e-144 515.4 432 60.0
BcaC08g47274 Brassica carinata HOM05D003764 ORTHO05D004356 9.9e-144 514.2 432 60.2
C06p50220 Brassica napus HOM05D003764 ORTHO05D004356 9.9e-144 514.2 432 60.2
BolC6t40061H Brassica oleracea HOM05D003764 ORTHO05D004356 9.9e-144 514.2 432 60.2
Hund01762 Selenicereus undatus HOM05D003764 ORTHO05D004356 1.3e-143 513.8 428 61.4
AUR62043557 Chenopodium quinoa HOM05D003764 ORTHO05D004356 3.8e-143 512.3 430 58.4
A07p41820 Brassica napus HOM05D003764 ORTHO05D004356 4.9e-143 511.9 432 59.7
Ah.00g000380 Amaranthus hybridus HOM05D003764 ORTHO05D004356 8.4e-143 511.1 345 68.7
MSTRG.25298 Avicennia marina HOM05D003764 ORTHO05D004356 8.4e-143 511.1 447 58.8
CsaV3_4G037170 Cucumis sativus L. HOM05D003764 ORTHO05D004356 8.4e-143 511.1 424 60.1
BraA07t31712Z Brassica rapa HOM05D003764 ORTHO05D004356 1.4e-142 510.4 432 60.0
AUR62036887 Chenopodium quinoa HOM05D003764 ORTHO05D004356 7.1e-142 508.1 430 57.7
Lalb_Chr11g0061681 Lupinus albus HOM05D003764 ORTHO05D004356 7.1e-142 508.1 363 65.8
SHI08003 Sapria himalayana HOM05D003764 ORTHO05D004356 7.1e-142 508.1 427 59.7
Carub.0002s2314 Capsella rubella HOM05D003764 ORTHO05D004356 9.2e-142 507.7 436 59.6
Psat0s5633g0040 Pisum sativum HOM05D003764 ORTHO05D004356 9.2e-142 507.7 439 57.6
Gohir.A01G106600 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.2e-141 507.3 432 59.0
MSTRG.1112 Avicennia marina HOM05D003764 ORTHO05D004356 2.1e-141 506.5 427 61.1
CSS0020809 Camellia sinensis var. sinensis HOM05D003764 ORTHO05D004356 2.1e-141 506.5 396 63.1
SGA_v2.0_scaffold108G30849 Striga asiatica HOM05D003764 ORTHO05D004356 6.0e-141 505.0 359 65.7
BcaC08g47123 Brassica carinata HOM05D003764 ORTHO05D004356 1.0e-140 504.2 432 59.3
SalBow7G4127 Salvia bowleyana HOM05D003764 ORTHO05D004356 1.3e-140 503.8 469 57.6
Gohir.D05G183000 Gossypium hirsutum HOM05D003764 ORTHO05D004356 1.7e-140 503.4 440 58.6
SGA_v2.0_scaffold275G46585 Striga asiatica HOM05D003764 ORTHO05D004356 3.0e-140 502.7 427 59.3
EL10Ac1g01980 Beta vulgaris HOM05D003764 ORTHO05D004356 3.9e-140 502.3 430 58.4
Cfa014062 Carpinus fangiana HOM05D003764 ORTHO05D004356 5.1e-140 501.9 431 60.6
Sed0020753 Sechium edule HOM05D003764 ORTHO05D004356 2.5e-139 499.6 424 59.4
Sc02g0009060 Simmondsia chinensis HOM05D003764 ORTHO05D004356 1.6e-138 496.9 430 57.7
BcaB02g07057 Brassica carinata HOM05D003764 ORTHO05D004356 2.8e-138 496.1 435 56.8
BcaC08g45536 Brassica carinata HOM05D003764 ORTHO05D004356 3.6e-138 495.7 435 57.7
C06p32120 Brassica napus HOM05D003764 ORTHO05D004356 3.6e-138 495.7 435 57.7
BolC6t38338H Brassica oleracea HOM05D003764 ORTHO05D004356 3.6e-138 495.7 435 57.7
A07p28580 Brassica napus HOM05D003764 ORTHO05D004356 1.8e-137 493.4 435 56.8
BraA07t30497Z Brassica rapa HOM05D003764 ORTHO05D004356 3.1e-137 492.7 431 56.8
SGA_v2.0_scaffold108G30854 Striga asiatica HOM05D003764 ORTHO05D004356 4.0e-137 492.3 371 63.3
CARHR069810 Cardamine hirsuta HOM05D003764 ORTHO05D004356 9.0e-137 491.1 435 56.8
HanXRQChr14g0428241 Helianthus annuus HOM05D003764 ORTHO05D004356 7.6e-136 488.0 427 56.0
Duzib093G1245 Durio zibethinus HOM05D003764 ORTHO05D004356 6.4e-135 485.0 426 56.8
Lalb_Chr23g0265831 Lupinus albus HOM05D003764 ORTHO05D004356 2.4e-134 483.0 422 58.1
PSO170G6284 Papaver somniferum HOM05D003764 ORTHO05D004356 7.8e-133 478.0 422 60.9
Lsat_1_v5_gn_2_6240 Lactuca sativa HOM05D003764 ORTHO05D004356 3.9e-132 475.7 437 54.7
Eucgr.F03548 Eucalyptus grandis HOM05D003764 ORTHO05D004356 8.7e-132 474.6 412 57.5
SGA_v2.0_scaffold275G46588 Striga asiatica HOM05D003764 ORTHO05D004356 1.1e-131 474.2 332 66.0
PSO170G2421 Papaver somniferum HOM05D003764 ORTHO05D004356 1.9e-131 473.4 427 58.5
PSO017G3905 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-130 470.7 426 58.9
PSO170G4333 Papaver somniferum HOM05D003764 ORTHO05D004356 3.6e-130 469.2 428 56.8
PSO017G1302 Papaver somniferum HOM05D003764 ORTHO05D004356 1.8e-129 466.8 420 58.3
ATR0106G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.0e-128 463.4 430 53.5
PSO104G0104 Papaver somniferum HOM05D003764 ORTHO05D004356 2.0e-128 463.4 424 58.3
PSO017G1063 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-127 460.7 424 58.0
PSO170G3515 Papaver somniferum HOM05D003764 ORTHO05D004356 1.3e-127 460.7 421 58.2
PSO017G3919 Papaver somniferum HOM05D003764 ORTHO05D004356 1.7e-127 460.3 423 57.4
CDE06G1096 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 2.9e-127 459.5 347 61.7
PSO017G4841 Papaver somniferum HOM05D003764 ORTHO05D004356 2.9e-127 459.5 430 56.0
THA.LOC104813245 Tarenaya hassleriana HOM05D003764 ORTHO05D004356 2.4e-126 456.4 458 54.4
Peaxi162Scf00064g01016 Petunia axillaris HOM05D003764 ORTHO05D004356 5.4e-126 455.3 326 67.5
Cpa.g.sc26.208 Carica papaya HOM05D003764 ORTHO05D004356 1.2e-125 454.1 291 71.1
PSO170G1328 Papaver somniferum HOM05D003764 ORTHO05D004356 2.7e-125 453.0 397 58.2
PSO017G1698 Papaver somniferum HOM05D003764 ORTHO05D004356 3.0e-124 449.5 416 56.2
HanXRQChr15g0491851 Helianthus annuus HOM05D003764 ORTHO05D004356 4.8e-122 442.2 396 55.3
unitig_747.g21519 Utricularia gibba HOM05D003764 ORTHO05D004356 9.9e-120 434.5 355 58.3
HPP92_026195 Vanilla planifolia HOM05D003764 ORTHO05D004356 4.9e-119 432.2 421 52.0
HPP92_022192 Vanilla planifolia HOM05D003764 ORTHO05D004356 3.0e-116 422.9 372 56.7
Sabra02G0009000 Salix brachista HOM05D003764 ORTHO05D004356 5.1e-116 422.2 242 79.8
MD15G1002800 Malus domestica HOM05D003764 ORTHO05D004356 1.5e-115 420.6 250 76.0
HPP92_022186 Vanilla planifolia HOM05D003764 ORTHO05D004356 7.4e-115 418.3 372 56.5
TWI12G0241 Tripterygium wilfordii HOM05D003764 ORTHO05D004356 1.1e-107 394.4 250 70.4
SEGI_06086 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 1.8e-105 387.1 343 54.8
HPP92_026182 Vanilla planifolia HOM05D003764 ORTHO05D004356 2.4e-105 386.7 368 53.3
CDE07G0072 Ceratophyllum demersum HOM05D003764 ORTHO05D004356 7.2e-102 375.2 305 59.0
SEGI_23487 Sequoiadendron giganteum HOM05D003764 ORTHO05D004356 3.6e-101 372.9 343 53.4
DCAR_013910 Daucus carota HOM05D003764 ORTHO05D004356 7.9e-101 371.7 451 47.0
Atru.chr13.152 Acer truncatum HOM05D003764 ORTHO05D004356 1.0e-100 371.3 307 65.5
Pp3c14_15070 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.0e-99 367.1 344 52.3
Mapoly0049s0068 Marchantia polymorpha HOM05D003764 ORTHO05D004356 2.4e-97 360.1 338 51.8
unitig_699.g19216 Utricularia gibba HOM05D003764 ORTHO05D004356 1.3e-95 354.4 358 47.8
unitig_747.g21882 Utricularia gibba HOM05D003764 ORTHO05D004356 1.7e-95 354.0 370 46.2
unitig_0.g1266 Utricularia gibba HOM05D003764 ORTHO05D004356 2.5e-94 350.1 343 49.0
Mapoly0006s0188 Marchantia polymorpha HOM05D003764 ORTHO05D004356 5.7e-91 339.0 341 48.7
unitig_699.g19217 Utricularia gibba HOM05D003764 ORTHO05D004356 4.8e-90 335.9 358 46.4
A09p51670 Brassica napus HOM05D003764 ORTHO05D004356 8.2e-90 335.1 244 62.7
AagrBONN_evm.TU.Sc2ySwM_228.3221 Anthoceros agrestis HOM05D003764 ORTHO05D004356 4.1e-89 332.8 375 45.9
HanXRQChr14g0428221 Helianthus annuus HOM05D003764 ORTHO05D004356 6.1e-85 318.9 237 59.5
SMO141G0079 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.4e-84 317.8 348 47.7
Zm00001eb209300 Zea mays HOM05D003764 ORTHO05D004356 8.2e-82 308.5 410 43.9
ECA238G1445 Erigeron canadensis HOM05D003764 ORTHO05D004356 5.0e-79 299.3 237 55.3
Pp3c2_5370 Physcomitrium patens HOM05D003764 ORTHO05D004356 4.8e-74 282.7 346 40.5
SMO147G0236 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 8.3e-74 282.0 341 43.4
AagrBONN_evm.TU.Sc2ySwM_368.3397 Anthoceros agrestis HOM05D003764 ORTHO05D004356 2.4e-73 280.4 328 44.5
Pp3c17_7390 Physcomitrium patens HOM05D003764 ORTHO05D004356 2.4e-73 280.4 341 40.2
SMO364G0266 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 9.1e-73 278.5 346 41.3
Pp3c17_5840 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.6e-72 277.7 431 39.0
Pp3c1_32600 Physcomitrium patens HOM05D003764 ORTHO05D004356 1.7e-71 274.2 344 41.6
unitig_52.g17754 Utricularia gibba HOM05D003764 ORTHO05D004356 1.0e-68 265.0 240 49.2
Potri.012G136700 Populus trichocarpa HOM05D003764 ORTHO05D004356 4.0e-68 263.1 138 97.8
SMO367G1018 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 1.6e-61 241.1 347 37.2
CBR_g3019 Chara braunii HOM05D003764 ORTHO05D004356 1.4e-57 228.0 392 36.0
Aqoxy6G01618 Aquilegia oxysepala HOM05D003764 ORTHO05D004356 1.2e-43 181.8 149 60.4
DCAR_010127 Daucus carota HOM05D003764 ORTHO05D004356 3.5e-32 143.7 154 47.4
CBR_g9154 Chara braunii HOM05D003764 ORTHO05D004356 3.0e-31 140.6 416 27.4
Cfa013034 Carpinus fangiana HOM05D003764 ORTHO05D004356 1.9e-22 111.3 85 56.5
ATR0756G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 4.8e-21 106.7 115 42.6
SMO170G0013 Selaginella moellendorffii HOM05D003764 ORTHO05D004356 2.1e-16 91.3 119 38.7
Os02g0119600 Oryza sativa ssp. japonica HOM05D003764 ORTHO05D004356 5.1e-15 86.7 79 44.3
ATR0276G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 1.5e-14 85.1 101 38.6
ATR0555G001 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.1e-08 64.7 68 36.8
ATR0138G019 Amborella trichopoda HOM05D003764 ORTHO05D004356 2.7e-08 64.3 122 35.2
Nn1g01454 Nelumbo nucifera HOM05D003764 ORTHO05D004356 2.7e-08 64.3 36 77.8


User provided reference genes

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