Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.8e-163 577.8 294 100.0
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 6.7e-125 451.1 295 78.3
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 2.0e-100 369.8 298 68.1
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 2.5e-79 299.7 231 68.8
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 6.2e-46 188.7 308 41.6
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 6.7e-40 168.7 296 38.9
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 4.3e-39 166.0 327 36.7
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 7.2e-34 148.7 333 36.0
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 1.2e-33 147.9 304 39.1
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.3e-32 143.7 332 34.3
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 8.7e-32 141.7 326 36.2
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 8.7e-32 141.7 326 34.0
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 7.4e-31 138.7 341 35.5
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 9.7e-31 138.3 327 35.5
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 9.7e-31 138.3 234 37.6
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 2.8e-30 136.7 341 36.7
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 1.1e-29 134.8 354 31.9
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 5.3e-29 132.5 337 33.8
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 9.1e-29 131.7 299 35.1
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 1.2e-28 131.3 343 34.7
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 2.0e-28 130.6 336 36.6
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 4.5e-28 129.4 332 31.6
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 4.5e-28 129.4 303 36.3
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 4.5e-28 129.4 317 36.6
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 1.0e-27 128.3 347 34.0
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 1.3e-27 127.9 309 37.2
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 2.9e-27 126.7 333 35.1
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 6.5e-27 125.6 305 33.1
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 2.5e-26 123.6 345 33.3
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 5.5e-26 122.5 336 33.6
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.1e-25 120.6 336 32.7
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 2.7e-25 120.2 337 32.3
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 4.6e-25 119.4 322 34.8
Gohir.A02G172400 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.4e-24 117.9 333 33.0
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.8e-24 117.5 334 31.4
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 5.1e-24 115.9 320 31.6
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 5.1e-24 115.9 328 30.5
CiPaw.08G067700 Carya illinoinensis HOM05D004095 ORTHO05D003197 6.7e-24 115.5 332 30.1
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 8.8e-24 115.2 326 32.5
Haze_03728 Corylus avellana HOM05D004095 ORTHO05D003197 1.1e-23 114.8 271 36.5
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-23 114.8 303 34.3
Gohir.D03G007700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.1e-23 114.8 333 33.9
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 2.6e-23 113.6 232 34.1
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.3e-23 113.2 302 36.1
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 3.3e-23 113.2 232 35.8
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 4.4e-23 112.8 342 31.3
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 4.4e-23 112.8 335 32.2
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 9.7e-23 111.7 345 32.2
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 2.8e-22 110.2 341 26.7
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 8.2e-22 108.6 310 33.9
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 2.4e-21 107.1 305 30.2
PGSC0003DMG400009946 Solanum tuberosum HOM05D004095 ORTHO05D003197 4.1e-21 106.3 329 33.4
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 9.1e-21 105.1 327 32.4
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.5e-20 104.4 257 31.1
arahy.Tifrunner.gnm1.ann1.I59WU7 Arachis hypogaea HOM05D004095 ORTHO05D003197 2.6e-20 103.6 335 32.8
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 2.6e-20 103.6 314 32.8
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 7.7e-20 102.1 318 31.8
Prupe.1G362500 Prunus persica HOM05D004095 ORTHO05D003197 7.7e-20 102.1 253 31.2
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 1.0e-19 101.7 310 34.8
CAN.G311.49 Capsicum annuum HOM05D004095 ORTHO05D003197 5.0e-19 99.4 317 31.9
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 5.0e-19 99.4 307 32.9
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 6.5e-19 99.0 320 32.2
MSTRG.25264 Avicennia marina HOM05D004095 ORTHO05D003197 8.5e-19 98.6 362 27.6
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.4e-18 97.8 303 29.7
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.4e-18 97.8 279 33.3
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 2.5e-18 97.1 367 28.6
Hund01666 Selenicereus undatus HOM05D004095 ORTHO05D003197 2.5e-18 97.1 371 30.5
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 2.5e-18 97.1 242 31.8
arahy.Tifrunner.gnm1.ann1.VNIF6J Arachis hypogaea HOM05D004095 ORTHO05D003197 7.2e-18 95.5 332 31.9
Migut.C00862 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.2e-18 95.5 371 33.4
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 7.2e-18 95.5 310 30.6
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 7.2e-18 95.5 313 31.9
Solyc04g081730.3 Solanum lycopersicum HOM05D004095 ORTHO05D003197 7.2e-18 95.5 328 32.0
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 7.2e-18 95.5 394 26.6
Sopen04g035350 Solanum pennellii HOM05D004095 ORTHO05D003197 9.4e-18 95.1 328 32.3
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.6e-17 94.4 322 33.2
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 3.6e-17 93.2 380 26.3
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 3.6e-17 93.2 380 28.7
Gorai.008G131100 Gossypium raimondii HOM05D004095 ORTHO05D003197 6.1e-17 92.4 239 33.1
DCAR_009498 Daucus carota HOM05D004095 ORTHO05D003197 7.9e-17 92.0 378 29.4
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 1.8e-16 90.9 351 28.2
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 2.3e-16 90.5 316 32.9
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 3.9e-16 89.7 322 32.9
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 6.7e-16 89.0 340 26.5
THA.LOC104813782 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 6.7e-16 89.0 320 31.9
Actinidia15439 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.1e-15 88.2 189 39.7
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 1.1e-15 88.2 319 29.8
QL11p050200 Quercus lobata HOM05D004095 ORTHO05D003197 1.5e-15 87.8 336 27.7
Sc15g0004790 Simmondsia chinensis HOM05D004095 ORTHO05D003197 1.5e-15 87.8 346 29.8
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 2.0e-15 87.4 321 28.7
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 2.0e-15 87.4 352 27.6
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 2.0e-15 87.4 316 30.4
GSVIVG01018727001 Vitis vinifera HOM05D004095 ORTHO05D003197 2.6e-15 87.0 182 34.1
MSTRG.22345 Avicennia marina HOM05D004095 ORTHO05D003197 3.3e-15 86.7 330 30.0
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 7.4e-15 85.5 263 28.9
unitig_749.g13901 Utricularia gibba HOM05D004095 ORTHO05D003197 7.4e-15 85.5 336 32.4
Eucgr.H00956 Eucalyptus grandis HOM05D066110 ORTHO05D003197 1.7e-14 84.3 222 31.5
SGA_v2.0_scaffold11G05941 Striga asiatica HOM05D004095 ORTHO05D003197 1.7e-14 84.3 318 31.4
Ciclev10025767m.g Citrus clementina HOM05D004095 ORTHO05D003197 3.7e-14 83.2 295 28.8
Aa31LG7G4540 Aethionema arabicum HOM05D008819 ORTHO05D003197 4.8e-14 82.8 321 27.7
THA.LOC104804274 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.8e-14 82.8 344 30.2
Nn5g30782 Nelumbo nucifera HOM05D004095 ORTHO05D003197 1.1e-13 81.6 332 28.0
SGA_v2.0_scaffold19G08554 Striga asiatica HOM05D004095 ORTHO05D003197 1.4e-13 81.3 346 29.5
CAN.G1517.6 Capsicum annuum HOM05D004095 ORTHO05D003197 2.4e-13 80.5 320 29.7
MBI05_g23379_MAGBIO Magnolia biondii HOM05D004095 ORTHO05D003197 2.4e-13 80.5 180 39.4
THA.LOC104809551 Tarenaya hassleriana HOM05D008819 ORTHO05D003197 2.4e-13 80.5 260 28.1
Actinidia17001 Actinidia chinensis HOM05D004095 ORTHO05D003197 3.1e-13 80.1 281 29.9
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 3.1e-13 80.1 394 25.6
THA.LOC104807504 Tarenaya hassleriana HOM05D004095 ORTHO05D003197 4.1e-13 79.7 351 28.5
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 2.0e-12 77.4 387 26.4
C01p03060 Brassica napus HOM05D004095 ORTHO05D003197 4.5e-12 76.3 349 27.8
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 5.9e-12 75.9 235 31.1
Aqoxy6G02168 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 7.7e-12 75.5 321 27.7
Nitab4.5_0006505g0050 Nicotiana tabacum HOM05D004095 ORTHO05D003197 1.0e-11 75.1 368 27.4
Prupe.7G171900 Prunus persica HOM05D004095 ORTHO05D003197 1.3e-11 74.7 401 25.4
SHI08550 Sapria himalayana HOM05D003189 ORTHO05D003449 1.3e-11 74.7 239 31.0
Cfa005239 Carpinus fangiana HOM05D004095 ORTHO05D003197 2.2e-11 73.9 311 28.3
CDE02G0850 Ceratophyllum demersum HOM05D033134 ORTHO05D034264 3.8e-11 73.2 350 28.3
BolC1t00292H Brassica oleracea HOM05D004095 ORTHO05D003197 5.0e-11 72.8 339 30.7
HPP92_007327 Vanilla planifolia HOM05D004095 ORTHO05D003197 5.0e-11 72.8 321 25.2
Actinidia03180 Actinidia chinensis HOM05D004095 ORTHO05D003197 1.1e-10 71.6 250 31.2
BcaNung00778 Brassica carinata HOM05D004095 ORTHO05D003197 1.1e-10 71.6 351 28.5
Lsat_1_v5_gn_8_29800 Lactuca sativa HOM05D004095 ORTHO05D003197 1.1e-10 71.6 192 38.5
Sp5g31000 Schrenkiella parvula HOM05D008819 ORTHO05D003197 3.2e-10 70.1 261 28.7
HanXRQChr12g0366821 Helianthus annuus HOM05D004095 ORTHO05D003197 7.2e-10 68.9 385 27.5
RcHm_v2.0_Chr2g0098961 Rosa chinensis HOM05D024588 ORTHO05D003197 9.4e-10 68.6 101 40.6
A07p03170 Brassica napus HOM05D004095 ORTHO05D003197 1.2e-09 68.2 319 25.4
C09p13630 Brassica napus HOM05D004095 ORTHO05D003197 1.2e-09 68.2 311 27.7
CANSAT25G2395 Cannabis sativa HOM05D004095 ORTHO05D003197 1.2e-09 68.2 417 23.3
AT2G17787 Arabidopsis thaliana HOM05D004095 ORTHO05D003197 1.6e-09 67.8 349 29.5
C07p23350 Brassica napus HOM05D008819 ORTHO05D003197 1.6e-09 67.8 318 30.8
Thhalv10019693m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 1.6e-09 67.8 263 28.5
BcaNung03339 Brassica carinata HOM05D008819 ORTHO05D003197 2.7e-09 67.0 318 30.8
AL3G50810 Arabidopsis lyrata HOM05D004095 ORTHO05D003197 3.6e-09 66.6 343 29.2
CARHR108180 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.6e-09 66.6 306 29.7
CARHR244340 Cardamine hirsuta HOM05D004095 ORTHO05D003197 3.6e-09 66.6 340 28.5
FAN19G1292 Fragaria x ananassa HOM05D024588 ORTHO05D003197 3.6e-09 66.6 88 42.0
Cpa.g.sc26.300 Carica papaya HOM05D004095 ORTHO05D003197 4.7e-09 66.2 86 44.2
BolC7t42868H Brassica oleracea HOM05D008819 ORTHO05D003197 6.1e-09 65.9 318 26.4
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 6.1e-09 65.9 319 28.2
TAR625G0988 Trochodendron aralioides HOM05D004095 ORTHO05D003197 6.1e-09 65.9 199 29.6
Aa31LG4G6060 Aethionema arabicum HOM05D008819 ORTHO05D003197 8.0e-09 65.5 305 29.8
Lj1g0024400 Lotus japonicus HOM05D004095 ORTHO05D003197 1.4e-08 64.7 91 37.4
BcaC06g36322 Brassica carinata HOM05D004095 ORTHO05D003197 1.8e-08 64.3 322 28.6
Phvul.001G004700 Phaseolus vulgaris HOM05D013708 ORTHO05D003197 2.3e-08 63.9 82 42.7
BraA07t28113Z Brassica rapa HOM05D004095 ORTHO05D003197 4.0e-08 63.2 335 25.1
AL2G35870 Arabidopsis lyrata HOM05D008819 ORTHO05D003197 5.2e-08 62.8 251 28.7
Carub.0007s0428 Capsella rubella HOM05D004095 ORTHO05D003197 5.2e-08 62.8 354 27.4
Gohir.D12G193466 Gossypium hirsutum HOM05D004095 ORTHO05D003197 5.2e-08 62.8 182 28.6
BcaC04g22942 Brassica carinata HOM05D004095 ORTHO05D003197 6.7e-08 62.4 320 26.6
BcaC08g47079 Brassica carinata HOM05D008819 ORTHO05D003197 6.7e-08 62.4 234 26.9
PGR119G1825 Punica granatum HOM05D004095 ORTHO05D003197 6.7e-08 62.4 228 31.1
Ah.00g000350 Amaranthus hybridus HOM05D004095 ORTHO05D003197 8.8e-08 62.0 115 33.0
BraA09t36805Z Brassica rapa HOM05D004095 ORTHO05D003197 8.8e-08 62.0 310 27.7
Carub.0001s1963 Capsella rubella HOM05D008819 ORTHO05D003197 1.2e-07 61.6 322 30.1
Gorai.008G208400 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.2e-07 61.6 173 27.7
C07p05400 Brassica napus HOM05D004095 ORTHO05D003197 2.6e-07 60.5 328 25.9
BcaB07g31703 Brassica carinata HOM05D004095 ORTHO05D003197 3.3e-07 60.1 312 26.9
Dinv39538 Davidia involucrata HOM05D004095 ORTHO05D003197 3.3e-07 60.1 136 40.4
VMungo0647G0628 Vigna mungo HOM05D013708 ORTHO05D003197 3.3e-07 60.1 193 35.2
GSVIVG01024025001 Vitis vinifera HOM05D004095 ORTHO05D003197 4.4e-07 59.7 328 26.2
CANSAT11G2253 Cannabis sativa HOM05D004095 ORTHO05D003197 5.7e-07 59.3 80 43.8
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 7.5e-07 58.9 336 23.2
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 7.5e-07 58.9 336 23.2
Thhalv10008464m.g Eutrema salsugineum HOM05D008819 ORTHO05D003197 7.5e-07 58.9 315 29.8
Thhalv10022767m.g Eutrema salsugineum HOM05D004095 ORTHO05D003197 7.5e-07 58.9 354 24.6
Carub.0003s3193 Capsella rubella HOM05D004095 ORTHO05D003197 9.7e-07 58.5 343 26.5
A03p63990 Brassica napus HOM05D004095 ORTHO05D003197 1.3e-06 58.2 376 28.5
Haze_02143 Corylus avellana HOM05D015147 ORTHO05D003197 1.3e-06 58.2 324 25.9
Glyma.17G259300 Glycine max HOM05D013708 ORTHO05D003197 1.3e-06 58.2 83 38.6
unitig_747.g21527 Utricularia gibba HOM05D002344 ORTHO05D002954 1.3e-06 58.2 306 29.4
A07p41430 Brassica napus HOM05D008819 ORTHO05D003197 1.7e-06 57.8 248 26.6
BolC7t40940H Brassica oleracea HOM05D004095 ORTHO05D003197 1.7e-06 57.8 328 25.6
TPR.G38526 Trifolium pratense HOM05D004095 ORTHO05D003197 2.2e-06 57.4 78 35.9
BraA03t15466Z Brassica rapa HOM05D004095 ORTHO05D003197 2.8e-06 57.0 379 24.5
A01p02760 Brassica napus HOM05D004095 ORTHO05D003197 3.7e-06 56.6 341 28.4
BolC6t40021H Brassica oleracea HOM05D008819 ORTHO05D003197 3.7e-06 56.6 236 27.1
Peaxi162Scf00064g00737 Petunia axillaris HOM05D004095 ORTHO05D003197 4.8e-06 56.2 275 29.1
Potri.009G134800 Populus trichocarpa HOM05D015147 ORTHO05D003197 4.8e-06 56.2 336 26.8
Duzib052G0919 Durio zibethinus HOM05D015147 ORTHO05D003197 6.3e-06 55.8 80 36.2
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 6.3e-06 55.8 161 26.7
AT1G75860 Arabidopsis thaliana HOM05D008819 ORTHO05D003197 8.2e-06 55.5 252 27.8
BcaC08g47318 Brassica carinata HOM05D008819 ORTHO05D003197 8.2e-06 55.5 236 26.7
unitig_0.g2088 Utricularia gibba HOM05D004095 ORTHO05D003197 8.2e-06 55.5 91 37.4


User provided reference genes

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