Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G242300 Populus trichocarpa HOM05D004095 ORTHO05D003197 6.0e-132 474.2 236 100.0
Potri.002G019200 Populus trichocarpa HOM05D004095 ORTHO05D003197 7.5e-42 174.9 291 40.9
Potri.005G242400 Populus trichocarpa HOM05D004095 ORTHO05D003197 4.3e-37 159.1 296 38.9
Sabra05G0187500 Salix brachista HOM05D004095 ORTHO05D003197 6.8e-35 151.8 295 36.3
Sabra02G0015500 Salix brachista HOM05D004095 ORTHO05D003197 1.8e-32 143.7 228 39.5
TWI12G1115 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 9.8e-26 121.3 310 33.5
Manes.18G010907 Manihot esculenta HOM05D004095 ORTHO05D003197 2.2e-25 120.2 302 34.1
TWI36G1615 Tripterygium wilfordii HOM05D004095 ORTHO05D003197 1.9e-21 107.1 216 34.3
Duzib093G1456 Durio zibethinus HOM05D004095 ORTHO05D003197 2.3e-19 100.1 293 31.7
Haze_22667 Corylus avellana HOM05D004095 ORTHO05D003197 8.9e-19 98.2 205 34.6
Dinv31870 Davidia involucrata HOM05D004095 ORTHO05D003197 1.5e-18 97.4 332 32.5
TAR381G0731 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.5e-18 97.4 202 32.7
Hma1.2p1_0023F.1_g015650 Hydrangea macrophylla HOM05D004095 ORTHO05D003197 1.7e-17 94.0 224 32.1
Cc10_g01420 Coffea canephora HOM05D004095 ORTHO05D003197 2.4e-16 90.1 322 28.3
Nn6g31993 Nelumbo nucifera HOM05D004095 ORTHO05D003197 2.4e-16 90.1 328 30.2
Ciclev10002009m.g Citrus clementina HOM05D004095 ORTHO05D003197 1.2e-15 87.8 306 31.4
CiPaw.07G146700 Carya illinoinensis HOM05D004095 ORTHO05D003197 3.5e-15 86.3 315 30.2
Duzib041G0318 Durio zibethinus HOM05D004095 ORTHO05D003197 3.0e-14 83.2 288 29.9
Thecc.08G047900 Theobroma cacao HOM05D004095 ORTHO05D003197 3.0e-14 83.2 301 27.9
Gohir.D01G096700 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.9e-14 82.8 281 30.6
CSS0006390 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 3.3e-13 79.7 266 30.1
FvH4_2g38160 Fragaria vesca HOM05D004095 ORTHO05D003197 5.6e-13 79.0 269 29.7
CSS0032179 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 7.3e-13 78.6 265 30.9
Gorai.002G122400 Gossypium raimondii HOM05D004095 ORTHO05D003197 9.5e-13 78.2 194 30.9
Lj4A21T58 Lonicera japonica HOM05D004095 ORTHO05D003197 9.5e-13 78.2 350 26.9
Sed0007913 Sechium edule HOM05D004095 ORTHO05D003197 2.8e-12 76.6 303 31.0
Lj4A799T84 Lonicera japonica HOM05D004095 ORTHO05D003197 3.6e-12 76.3 265 33.6
Gorai.009G193100 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.4e-11 74.3 292 30.8
Cfa013982 Carpinus fangiana HOM05D004095 ORTHO05D003197 1.8e-11 73.9 283 30.4
FAN27G1813 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.8e-11 73.9 267 29.2
TAR376G0784 Trochodendron aralioides HOM05D004095 ORTHO05D003197 1.8e-11 73.9 320 26.2
Gohir.D05G187800 Gossypium hirsutum HOM05D004095 ORTHO05D003197 3.1e-11 73.2 292 31.2
Gohir.A05G185000 Gossypium hirsutum HOM05D004095 ORTHO05D003197 4.0e-11 72.8 284 29.6
Gohir.A01G110100 Gossypium hirsutum HOM05D004095 ORTHO05D003197 6.8e-11 72.0 277 29.6
CsaV3_2G024280 Cucumis sativus L. HOM05D004095 ORTHO05D003197 8.9e-11 71.6 330 29.4
vmacro07570 Vaccinium macrocarpon HOM05D004095 ORTHO05D003197 8.9e-11 71.6 111 36.9
FAN20G0678 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.5e-10 70.9 283 31.4
MELO3C011353.2 Cucumis melo HOM05D004095 ORTHO05D003197 2.0e-10 70.5 333 28.5
Sed0017695 Sechium edule HOM05D004095 ORTHO05D003197 4.4e-10 69.3 307 29.0
TAR628G1526 Trochodendron aralioides HOM05D004095 ORTHO05D003197 7.6e-10 68.6 268 26.1
Lj5g0025072 Lotus japonicus HOM05D004095 ORTHO05D003197 9.9e-10 68.2 293 29.0
FAN15G2156 Fragaria x ananassa HOM05D004095 ORTHO05D003197 1.3e-09 67.8 247 30.0
Eucgr.I02328 Eucalyptus grandis HOM05D004095 ORTHO05D003197 1.7e-09 67.4 318 27.7
Medtr1g025620 Medicago truncatula HOM05D013708 ORTHO05D003197 2.2e-09 67.0 245 26.9
PSO675G0587 Papaver somniferum HOM05D004095 ORTHO05D003197 2.2e-09 67.0 317 28.4
RcHm_v2.0_Chr6g0303321 Rosa chinensis HOM05D004095 ORTHO05D003197 3.7e-09 66.2 278 29.9
Cfa007004 Carpinus fangiana HOM05D004095 ORTHO05D003197 4.9e-09 65.9 330 27.0
Oeu026642.1 Olea europaea HOM05D004095 ORTHO05D003197 4.9e-09 65.9 229 28.4
Medtr1g034990 Medicago truncatula HOM05D013708 ORTHO05D003197 8.4e-09 65.1 304 26.0
PGR031G2559 Punica granatum HOM05D004095 ORTHO05D003197 8.4e-09 65.1 316 26.6
Prupe.1G362800 Prunus persica HOM05D004095 ORTHO05D003197 1.1e-08 64.7 111 37.8
Ca_13423_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 1.4e-08 64.3 176 29.0
Ca_13439_v3 Cicer arietinum L. HOM05D013708 ORTHO05D003197 1.4e-08 64.3 176 29.0
Lalb_Chr08g0246191 Lupinus albus HOM05D004095 ORTHO05D003197 1.4e-08 64.3 322 27.3
COL.COLO4_22466 Corchorus olitorius HOM05D004095 ORTHO05D003197 1.9e-08 63.9 300 27.0
Duzib147G0922 Durio zibethinus HOM05D004095 ORTHO05D003197 1.9e-08 63.9 332 26.5
QL02p012206 Quercus lobata HOM05D004095 ORTHO05D003197 1.9e-08 63.9 87 39.1
Cpa.g.sc26.299 Carica papaya HOM05D004095 ORTHO05D003197 2.4e-08 63.5 110 34.5
MSTRG.1174 Avicennia marina HOM05D004095 ORTHO05D003197 4.1e-08 62.8 343 28.6
CSS0036757 Camellia sinensis var. sinensis HOM05D004095 ORTHO05D003197 4.1e-08 62.8 91 39.6
Duzib187G0006 Durio zibethinus HOM05D004095 ORTHO05D003197 4.1e-08 62.8 328 26.2
PSO541G2818 Papaver somniferum HOM05D004095 ORTHO05D003197 4.1e-08 62.8 322 25.8
EL10Ac3g06641 Beta vulgaris HOM05D004095 ORTHO05D003197 1.2e-07 61.2 119 33.6
COL.COLO4_26117 Corchorus olitorius HOM05D004095 ORTHO05D003197 2.1e-07 60.5 219 27.4
PGSC0003DMG400029333 Solanum tuberosum HOM05D004095 ORTHO05D003197 3.5e-07 59.7 296 27.4
PSO170G2543 Papaver somniferum HOM05D004095 ORTHO05D003197 4.6e-07 59.3 339 26.8
TPR.G32858 Trifolium pratense HOM05D013708 ORTHO05D003197 6.0e-07 58.9 299 26.1
Atru.chr3.863_Atru.chr3.864 Acer truncatum HOM05D004095 ORTHO05D003197 7.8e-07 58.5 369 25.2
Migut.O00908 Erythranthe guttata HOM05D004095 ORTHO05D003197 7.8e-07 58.5 246 27.2
Oeu061977.1 Olea europaea HOM05D004095 ORTHO05D003197 7.8e-07 58.5 346 25.7
Thecc.02G059700 Theobroma cacao HOM05D015147 ORTHO05D003197 7.8e-07 58.5 108 37.0
AUR62040566 Chenopodium quinoa HOM05D004095 ORTHO05D003197 1.0e-06 58.2 120 32.5
PSO700G0117 Papaver somniferum HOM05D004095 ORTHO05D003197 1.0e-06 58.2 345 27.2
Duzib264G0091 Durio zibethinus HOM05D004095 ORTHO05D003197 1.3e-06 57.8 329 24.0
Gorai.003G007900 Gossypium raimondii HOM05D004095 ORTHO05D003197 1.7e-06 57.4 327 27.2
Peaxi162Scf00860g00422 Petunia axillaris HOM05D004095 ORTHO05D003197 2.3e-06 57.0 306 28.4
AUR62041467 Chenopodium quinoa HOM05D004095 ORTHO05D003197 3.0e-06 56.6 196 27.6
Oeu007365.1 Olea europaea HOM05D004095 ORTHO05D003197 3.0e-06 56.6 236 29.7
ClCG08G014140 Citrullus lanatus HOM05D004095 ORTHO05D003197 5.1e-06 55.8 335 26.6
Aqoxy5G01820 Aquilegia oxysepala HOM05D004095 ORTHO05D003197 6.6e-06 55.5 319 24.5
TPR.G26385 Trifolium pratense HOM05D013708 ORTHO05D003197 6.6e-06 55.5 107 33.6
SalBow7G2790 Salvia bowleyana HOM05D004095 ORTHO05D003197 8.6e-06 55.1 236 26.7


User provided reference genes

Program Settings