Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G238200 Populus trichocarpa HOM05D004999 ORTHO05D007513 1.4e-165 586.3 299 100.0
Potri.002G023300 Populus trichocarpa HOM05D004999 ORTHO05D007513 3.2e-138 495.4 290 88.6
Sabra02G0019000 Salix brachista HOM05D004999 ORTHO05D007513 5.2e-125 451.4 306 80.1
Manes.05G148301 Manihot esculenta HOM05D004999 ORTHO05D007513 2.8e-118 429.1 296 76.0
TWI56G0255 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 2.6e-116 422.5 296 74.0
Atru.chr13.305 Acer truncatum HOM05D004999 ORTHO05D007513 3.4e-116 422.2 299 73.6
TWI36G1418 Tripterygium wilfordii HOM05D004999 ORTHO05D007513 1.2e-113 413.7 297 72.1
Thecc.08G043100 Theobroma cacao HOM05D004999 ORTHO05D007513 1.3e-112 410.2 299 71.9
Dinv39509 Davidia involucrata HOM05D004999 ORTHO05D007513 8.7e-112 407.5 305 72.5
Gorai.009G195100 Gossypium raimondii HOM05D004999 ORTHO05D007513 9.6e-111 404.1 299 69.9
CSS0048815 Camellia sinensis var. sinensis HOM05D004999 ORTHO05D007513 3.7e-110 402.1 299 70.2
Duzib041G0279 Durio zibethinus HOM05D004999 ORTHO05D007513 1.4e-109 400.2 300 70.7
Gohir.D05G189800 Gossypium hirsutum HOM05D004999 ORTHO05D007513 5.3e-109 398.3 299 68.9
Lj4A25T52 Lonicera japonica HOM05D004999 ORTHO05D007513 1.2e-108 397.1 306 67.0
Cfa013940 Carpinus fangiana HOM05D004999 ORTHO05D007513 1.5e-108 396.7 299 69.9
Gohir.A05G186900 Gossypium hirsutum HOM05D004999 ORTHO05D007513 1.5e-108 396.7 299 69.6
ClCG08G014370 Citrullus lanatus HOM05D004999 ORTHO05D007513 4.5e-108 395.2 295 69.5
CsaV3_2G029460 Cucumis sativus L. HOM05D004999 ORTHO05D007513 1.3e-107 393.7 295 69.5
QL02p011429 Quercus lobata HOM05D004999 ORTHO05D007513 1.3e-107 393.7 322 67.4
MELO3C011005.2 Cucumis melo HOM05D004999 ORTHO05D007513 1.7e-107 393.3 291 69.4
Prupe.1G366700 Prunus persica HOM05D004999 ORTHO05D007513 1.7e-107 393.3 299 70.2
Duzib093G1482 Durio zibethinus HOM05D004999 ORTHO05D007513 3.8e-107 392.1 303 70.0
Rhsim06G0021900 Rhododendron simsii HOM05D004999 ORTHO05D007513 3.8e-107 392.1 301 66.1
Sed0007289 Sechium edule HOM05D004999 ORTHO05D007513 8.4e-107 391.0 298 68.5
MD08G1013700 Malus domestica HOM05D004999 ORTHO05D007513 1.4e-106 390.2 299 69.6
MD15G1013300 Malus domestica HOM05D004999 ORTHO05D007513 1.4e-106 390.2 299 69.6
Actinidia15416 Actinidia chinensis HOM05D004999 ORTHO05D007513 3.2e-106 389.0 301 66.8
Ciclev10001119m.g Citrus clementina HOM05D004999 ORTHO05D007513 3.2e-106 389.0 298 67.1
Ca_13413_v3 Cicer arietinum L. HOM05D004999 ORTHO05D007513 1.6e-105 386.7 293 70.0
RcHm_v2.0_Chr6g0302731 Rosa chinensis HOM05D004999 ORTHO05D007513 1.6e-105 386.7 299 69.6
THA.LOC104806888 Tarenaya hassleriana HOM05D004999 ORTHO05D007513 1.6e-105 386.7 295 68.8
FvH4_2g38570 Fragaria vesca HOM05D004999 ORTHO05D007513 1.0e-104 384.0 300 69.7
Solyc04g081360.3 Solanum lycopersicum HOM05D004999 ORTHO05D007513 1.8e-104 383.3 291 68.0
Glyma.17G257600 Glycine max HOM05D004999 ORTHO05D007513 3.0e-104 382.5 297 67.7
Nn1g05879 Nelumbo nucifera HOM05D004999 ORTHO05D007513 3.0e-104 382.5 295 67.5
VMungo0647G0227 Vigna mungo HOM05D004999 ORTHO05D007513 3.9e-104 382.1 295 68.5
TPR.G30999 Trifolium pratense HOM05D004999 ORTHO05D007513 5.1e-104 381.7 297 68.7
TPR.G34334 Trifolium pratense HOM05D004999 ORTHO05D007513 6.7e-104 381.3 300 68.7
Lalb_Chr24g0398721 Lupinus albus HOM05D004999 ORTHO05D007513 1.1e-103 380.6 301 65.8
GSVIVG01009891001 Vitis vinifera HOM05D004999 ORTHO05D007513 1.1e-103 380.6 308 66.6
arahy.Tifrunner.gnm1.ann1.A5JBZH Arachis hypogaea HOM05D004999 ORTHO05D007513 1.5e-103 380.2 301 66.8
Phvul.001G007200 Phaseolus vulgaris HOM05D004999 ORTHO05D007513 1.5e-103 380.2 296 67.2
CiPaw.08G065700 Carya illinoinensis HOM05D004999 ORTHO05D007513 1.9e-103 379.8 315 66.0
Thhalv10001448m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 1.9e-103 379.8 296 67.2
Lj5g0016888 Lotus japonicus HOM05D004999 ORTHO05D007513 2.5e-103 379.4 298 66.4
Sopen04g034980 Solanum pennellii HOM05D004999 ORTHO05D007513 2.5e-103 379.4 291 67.7
Medtr1g024920 Medicago truncatula HOM05D004999 ORTHO05D007513 3.3e-103 379.0 303 68.0
CAN.G311.21 Capsicum annuum HOM05D004999 ORTHO05D007513 9.6e-103 377.5 291 66.7
FAN27G0904 Fragaria x ananassa HOM05D004999 ORTHO05D007513 9.6e-103 377.5 300 68.3
arahy.Tifrunner.gnm1.ann1.BI3E2S Arachis hypogaea HOM05D004999 ORTHO05D007513 1.6e-102 376.7 301 66.4
Lj5g0025890 Lotus japonicus HOM05D004999 ORTHO05D007513 3.7e-102 375.6 298 64.8
Haze_22624 Corylus avellana HOM05D004999 ORTHO05D007513 4.8e-102 375.2 338 61.5
Sp4g27780 Schrenkiella parvula HOM05D004999 ORTHO05D007513 4.8e-102 375.2 296 65.2
Eucgr.F01642 Eucalyptus grandis HOM05D004999 ORTHO05D007513 1.1e-101 374.0 295 67.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.4e-101 373.6 289 67.8
PGR083G2044 Punica granatum HOM05D004999 ORTHO05D007513 1.8e-101 373.2 305 64.9
Glyma.14G218500 Glycine max HOM05D004999 ORTHO05D007513 3.1e-101 372.5 296 65.5
AL4G44920 Arabidopsis lyrata HOM05D004999 ORTHO05D007513 4.0e-101 372.1 298 65.4
SalBow7G4700 Salvia bowleyana HOM05D004999 ORTHO05D007513 4.0e-101 372.1 303 65.3
PGSC0003DMG400003779 Solanum tuberosum HOM05D004999 ORTHO05D007513 5.3e-101 371.7 292 67.1
AT2G45730 Arabidopsis thaliana HOM05D004999 ORTHO05D007513 6.9e-101 371.3 297 65.3
A04p33990 Brassica napus HOM05D004999 ORTHO05D007513 2.0e-100 369.8 289 64.7
Dinv31836 Davidia involucrata HOM05D004999 ORTHO05D007513 2.0e-100 369.8 314 65.9
Peaxi162Scf00438g00629 Petunia axillaris HOM05D004999 ORTHO05D007513 3.4e-100 369.0 291 65.3
CARHR140980 Cardamine hirsuta HOM05D004999 ORTHO05D007513 4.5e-100 368.6 299 63.9
Aqoxy5G01776 Aquilegia oxysepala HOM05D004999 ORTHO05D007513 1.3e-99 367.1 314 63.1
Aa31LG9G12650 Aethionema arabicum HOM05D004999 ORTHO05D007513 1.7e-99 366.7 289 66.1
vmacro21722 Vaccinium macrocarpon HOM05D004999 ORTHO05D007513 1.7e-99 366.7 367 55.9
BraA04t18860Z Brassica rapa HOM05D004999 ORTHO05D007513 2.2e-99 366.3 289 64.4
C04p71790 Brassica napus HOM05D004999 ORTHO05D007513 3.8e-99 365.5 289 65.1
TAR381G0667 Trochodendron aralioides HOM05D004999 ORTHO05D007513 3.8e-99 365.5 338 58.9
Sc02g0008530 Simmondsia chinensis HOM05D004999 ORTHO05D007513 4.9e-99 365.2 297 65.7
SGA_v2.0_scaffold11G05913 Striga asiatica HOM05D004999 ORTHO05D007513 1.1e-98 364.0 293 65.2
Cc10_g01760 Coffea canephora HOM05D004999 ORTHO05D007513 1.4e-98 363.6 301 65.1
FAN15G0085 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.4e-98 363.6 298 67.8
ECA238G1075 Erigeron canadensis HOM05D004999 ORTHO05D007513 1.9e-98 363.2 306 63.4
BcaB01g03255 Brassica carinata HOM05D004999 ORTHO05D007513 2.5e-98 362.8 296 64.2
BcaC02g07075 Brassica carinata HOM05D004999 ORTHO05D007513 4.2e-98 362.1 289 64.4
BolC4t28677H Brassica oleracea HOM05D004999 ORTHO05D007513 4.2e-98 362.1 289 64.4
Carub.0004s2839 Capsella rubella HOM05D004999 ORTHO05D007513 4.2e-98 362.1 296 64.2
CANSAT01G2959 Cannabis sativa HOM05D004999 ORTHO05D007513 9.3e-98 360.9 294 65.3
A03p25340 Brassica napus HOM05D004999 ORTHO05D007513 3.5e-97 359.0 289 64.0
BcaB02g09016 Brassica carinata HOM05D004999 ORTHO05D007513 6.0e-97 358.2 290 65.2
Migut.C00822 Erythranthe guttata HOM05D004999 ORTHO05D007513 6.0e-97 358.2 289 64.4
BraA03t11740Z Brassica rapa HOM05D004999 ORTHO05D007513 1.8e-96 356.7 289 64.0
BolC3t15374H Brassica oleracea HOM05D004999 ORTHO05D007513 6.7e-96 354.8 289 64.0
EL10Ac6g14553 Beta vulgaris HOM05D004999 ORTHO05D007513 1.5e-95 353.6 291 64.3
BcaC01g05108 Brassica carinata HOM05D004999 ORTHO05D007513 4.3e-95 352.1 291 63.9
Oeu020873.1 Olea europaea HOM05D004999 ORTHO05D007513 7.4e-95 351.3 295 64.1
PSO170G1336 Papaver somniferum HOM05D004999 ORTHO05D007513 7.4e-95 351.3 317 60.6
PSO700G0267 Papaver somniferum HOM05D004999 ORTHO05D007513 7.4e-95 351.3 316 58.9
FAN20G3168 Fragaria x ananassa HOM05D004999 ORTHO05D007513 1.3e-94 350.5 303 65.0
COL.COLO4_26158 Corchorus olitorius HOM05D004999 ORTHO05D007513 4.8e-94 348.6 270 68.5
Nitab4.5_0001540g0030 Nicotiana tabacum HOM05D004999 ORTHO05D007513 8.2e-94 347.8 291 64.3
Ah.04g153930 Amaranthus hybridus HOM05D004999 ORTHO05D007513 3.1e-93 345.9 291 61.2
C03p30250 Brassica napus HOM05D004999 ORTHO05D007513 5.3e-93 345.1 289 62.6
unitig_749.g13859 Utricularia gibba HOM05D004999 ORTHO05D007513 1.7e-91 340.1 297 59.6
DCAR_017472 Daucus carota HOM05D004999 ORTHO05D007513 3.8e-91 339.0 298 61.4
Hund05204 Selenicereus undatus HOM05D004999 ORTHO05D007513 7.2e-90 334.7 360 50.6
Zm00001eb142530 Zea mays HOM05D004999 ORTHO05D007513 2.3e-88 329.7 326 54.6
ATR0767G249 Amborella trichopoda HOM05D004999 ORTHO05D007513 7.4e-87 324.7 331 54.7
Os04g0112300 Oryza sativa ssp. japonica HOM05D004999 ORTHO05D007513 2.2e-86 323.2 329 54.7
HanXRQChr14g0430231 Helianthus annuus HOM05D004999 ORTHO05D007513 6.9e-85 318.2 305 58.7
HPP92_027505 Vanilla planifolia HOM05D004999 ORTHO05D007513 1.1e-82 310.8 332 53.6
AUR62002963 Chenopodium quinoa HOM05D004999 ORTHO05D007513 2.7e-81 306.2 280 60.4
AUR62007769 Chenopodium quinoa HOM05D004999 ORTHO05D007513 3.6e-81 305.8 280 60.4
CDE09G1336 Ceratophyllum demersum HOM05D004999 ORTHO05D007513 4.8e-78 295.4 337 51.0
Pp3c13_19410 Physcomitrium patens HOM05D004999 ORTHO05D007513 2.0e-76 290.0 307 52.1
Cpa.g.sc8.166 Carica papaya HOM05D004999 ORTHO05D007513 8.0e-73 278.1 300 55.0
Mapoly0050s0121 Marchantia polymorpha HOM05D004999 ORTHO05D007513 1.4e-64 250.8 387 39.0
Psat5g146560 Pisum sativum HOM05D004999 ORTHO05D007513 2.6e-63 246.5 192 68.8
AagrBONN_evm.TU.Sc2ySwM_344.355 Anthoceros agrestis HOM05D004999 ORTHO05D007513 3.7e-62 242.7 352 42.0
SMO367G0765 Selaginella moellendorffii HOM05D004999 ORTHO05D007513 5.3e-61 238.8 341 42.2
MBI09_g25164_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D007513 1.4e-56 224.2 236 54.2
Oeu054699.1 Olea europaea HOM05D004999 ORTHO05D007513 4.4e-55 219.2 254 50.8
HPP92_022409 Vanilla planifolia HOM05D004999 ORTHO05D007513 4.8e-54 215.7 231 54.5
Actinidia16981 Actinidia chinensis HOM05D004999 ORTHO05D007513 1.0e-48 198.0 289 41.9
Zm00001eb363800 Zea mays HOM05D004999 ORTHO05D007513 1.5e-47 194.1 155 63.9
CBR_g45432 Chara braunii HOM05D004999 ORTHO05D007513 5.9e-44 182.2 453 30.9
Thhalv10014705m.g Eutrema salsugineum HOM05D004999 ORTHO05D007513 2.0e-39 167.2 174 52.9
MCO06G251 Micromonas commoda HOM05D004999 ORTHO05D007513 9.8e-39 164.9 319 34.5
PRCOL_00001952 Prasinoderma coloniale HOM05D004999 ORTHO05D007513 2.0e-36 157.1 327 33.6
Psat6g004000 Pisum sativum HOM05D000009 ORTHO05D000008 1.6e-33 147.5 216 43.1
Thecc.08G043300 Theobroma cacao HOM05D004999 ORTHO05D007513 1.2e-31 141.4 213 45.5
Cre12.g543100 Chlamydomonas reinhardtii HOM05D004999 ORTHO05D007513 2.6e-31 140.2 356 28.9
SEGI_39734 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 1.5e-18 97.8 236 31.4
BolC9t55805H Brassica oleracea HOM05D004999 ORTHO05D040156 1.6e-17 94.4 105 57.1
C09p29400 Brassica napus HOM05D004999 ORTHO05D040156 1.4e-16 91.3 105 55.2
MBI18_g38864_MAGBIO Magnolia biondii HOM05D001046 ORTHO05D012920 2.9e-14 83.6 129 39.5
C08p30330 Brassica napus HOM05D004999 ORTHO05D007513 4.2e-13 79.7 123 45.5
SEGI_23149 Sequoiadendron giganteum HOM05D004999 ORTHO05D007513 5.4e-13 79.3 53 73.6
MBI17_g46501_MAGBIO Magnolia biondii HOM05D004999 ORTHO05D012920 7.1e-13 79.0 72 56.9
C02p41440 Brassica napus HOM05D004999 ORTHO05D024529 1.2e-12 78.2 76 59.2
C04p17480 Brassica napus HOM05D004999 ORTHO05D024529 1.7e-11 74.3 78 57.7
BcaC01g01121 Brassica carinata HOM05D004999 ORTHO05D024221 5.1e-11 72.8 94 43.6
FAN24G3067 Fragaria x ananassa HOM05D004999 ORTHO05D209228 1.3e-09 68.2 56 66.1
SalBow3G3141 Salvia bowleyana HOM05D004999 ORTHO05D360697 1.5e-07 61.2 58 56.9
BolC3t21145H Brassica oleracea HOM05D004999 ORTHO05D024221 3.4e-07 60.1 79 49.4
BolC4t23296H Brassica oleracea HOM05D004999 ORTHO05D024529 2.9e-06 57.0 57 57.9


User provided reference genes

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