Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 2.9e-291 1004.6 541 100.0
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.5e-258 895.2 541 89.3
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.3e-219 766.5 543 79.0
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 2.3e-171 606.3 556 65.1
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 5.3e-160 568.5 546 63.6
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 1.3e-158 563.9 553 64.7
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 9.4e-157 557.8 553 62.4
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 5.7e-154 548.5 547 58.5
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 1.2e-151 540.8 552 56.9
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 7.7e-151 538.1 550 58.5
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 2.2e-150 536.6 547 57.0
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.5e-150 535.0 548 56.9
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 1.1e-149 534.3 555 56.8
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.1e-149 534.3 569 57.1
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 7.2e-149 531.6 552 58.5
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 4.7e-148 528.9 555 61.3
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 8.8e-147 524.6 552 58.2
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 1.5e-146 523.9 551 58.8
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 2.6e-146 523.1 548 56.8
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 1.7e-145 520.4 550 58.4
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 1.4e-144 517.3 549 60.8
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 2.7e-143 513.1 552 54.7
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.5e-143 512.7 551 54.6
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 1.7e-142 510.4 551 54.8
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 4.2e-141 505.8 553 58.4
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 9.5e-141 504.6 561 59.2
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 3.6e-140 502.7 554 59.6
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.4e-139 500.7 551 57.7
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.3e-139 500.0 562 54.3
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.5e-138 497.3 551 56.8
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.5e-138 497.3 562 55.2
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.0e-138 496.9 556 58.1
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 2.0e-138 496.9 551 59.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 2.2e-137 493.4 563 57.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.1e-136 491.1 554 55.4
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.1e-136 489.2 559 56.5
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 7.0e-136 488.4 561 56.9
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 3.5e-135 486.1 555 56.6
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 4.5e-135 485.7 550 54.7
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.3e-134 484.2 560 56.2
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 5.0e-134 482.3 603 53.1
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.5e-133 479.9 570 56.3
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 5.6e-133 478.8 546 55.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 2.8e-132 476.5 549 55.9
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.0e-131 474.6 547 52.7
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 1.4e-131 474.2 552 57.1
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 2.3e-131 473.4 550 57.6
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 4.0e-131 472.6 633 51.3
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 2.6e-130 469.9 557 53.9
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 3.4e-130 469.5 507 57.0
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.4e-130 469.2 534 57.9
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 3.7e-129 466.1 549 54.8
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 6.6e-126 455.3 563 54.5
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.4e-123 447.6 558 52.3
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 6.8e-123 445.3 569 53.4
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 8.9e-123 444.9 557 54.0
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.6e-122 443.4 559 54.6
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 9.8e-122 441.4 591 49.4
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 2.9e-121 439.9 548 50.7
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 6.4e-121 438.7 543 53.0
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 9.2e-120 434.9 553 49.9
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 1.2e-119 434.5 563 54.4
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 6.6e-118 428.7 561 52.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 1.1e-117 427.9 497 54.1
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 2.5e-117 426.8 569 50.6
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 5.6e-117 425.6 548 51.5
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 2.1e-116 423.7 551 49.0
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 1.1e-115 421.4 561 52.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 6.8e-115 418.7 559 48.7
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 8.9e-115 418.3 559 48.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.5e-114 417.5 553 51.7
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 7.5e-114 415.2 557 52.1
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 2.9e-113 413.3 557 49.0
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.9e-113 412.5 547 53.0
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 8.3e-113 411.8 503 52.3
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.1e-112 411.4 567 52.0
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.1e-112 409.5 547 52.8
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 5.4e-112 409.1 548 48.4
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 1.6e-111 407.5 563 49.6
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.7e-111 406.8 566 52.1
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 3.5e-111 406.4 563 49.2
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 4.6e-111 406.0 556 51.4
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 7.8e-111 405.2 550 48.5
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 7.8e-111 405.2 545 51.9
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 1.0e-110 404.8 558 51.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.7e-110 404.1 547 52.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 1.7e-110 404.1 567 51.5
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 6.6e-110 402.1 543 50.3
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 1.9e-109 400.6 550 46.7
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 9.5e-109 398.3 543 50.6
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 1.6e-108 397.5 543 46.6
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 4.7e-108 396.0 549 51.7
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 4.7e-108 396.0 501 51.5
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 1.1e-107 394.8 544 52.6
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.2e-106 391.3 547 53.0
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 4.4e-106 389.4 555 50.3
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 9.9e-106 388.3 550 48.0
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 2.2e-105 387.1 502 49.4
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 2.9e-105 386.7 551 46.3
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 3.8e-105 386.3 551 52.6
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 6.4e-105 385.6 547 52.5
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 1.4e-104 384.4 543 49.7
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 2.7e-103 380.2 554 51.6
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 2.7e-103 380.2 554 51.6
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 2.1e-100 370.5 551 48.5
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 4.7e-100 369.4 569 44.3
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 7.6e-98 362.1 556 44.1
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 2.9e-97 360.1 566 46.3
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 2.9e-97 360.1 660 39.8
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 6.6e-94 349.0 443 51.7
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 9.3e-80 302.0 379 50.1
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 1.0e-78 298.5 309 59.9
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.0e-78 297.0 586 40.1
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 2.8e-76 290.4 534 44.6
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 2.6e-74 283.9 536 43.8
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 3.8e-73 280.0 416 49.8
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 1.9e-72 277.7 318 53.8
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 3.5e-71 273.5 546 42.1
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 3.5e-71 273.5 546 42.1
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 2.5e-69 267.3 306 52.9
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.7e-68 263.5 402 50.5
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.9e-65 253.8 250 69.2
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 7.2e-56 222.6 603 33.7
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.2e-52 211.1 577 35.4
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.6e-47 193.7 296 45.3
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.3e-46 191.0 531 35.6
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 5.2e-46 189.9 420 37.4
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 2.0e-45 188.0 188 56.4
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.7e-44 184.9 133 77.4
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 8.2e-44 182.6 260 53.1
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 1.6e-42 178.3 303 42.9
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 6.5e-41 172.9 217 58.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 4.7e-39 166.8 157 60.5
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 4.5e-34 150.2 642 28.7
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.9e-32 144.8 556 30.4
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.0e-30 137.1 114 63.2
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.1e-24 119.0 487 26.1
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.0e-21 108.2 99 58.6
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 1.6e-18 98.6 240 36.2
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 2.7e-18 97.8 127 47.2
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.7e-18 97.8 189 36.0
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.7e-17 95.1 87 56.3
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.0e-14 85.9 196 38.3
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.0e-14 85.9 156 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.4e-14 85.5 491 29.3
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 6.8e-14 83.2 197 38.6
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 1.4e-11 75.5 357 27.5
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.7e-10 71.2 108 45.4
AagrBONN_evm.TU.Sc2ySwM_344.1880 Anthoceros agrestis HOM05D004539 ORTHO05D005482 3.0e-09 67.8 271 28.8


User provided reference genes

Program Settings