Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G228600 Populus trichocarpa HOM05D004108 ORTHO05D004849 1.1e-78 296.6 146 100.0
Sabra05G0176500 Salix brachista HOM05D004108 ORTHO05D004849 8.1e-63 243.8 146 80.8
Manes.18G023000 Manihot esculenta HOM05D004108 ORTHO05D004849 7.4e-48 194.1 148 64.9
Potri.002G034500 Populus trichocarpa HOM05D004108 ORTHO05D004849 4.5e-45 184.9 144 67.4
Thecc.08G029500 Theobroma cacao HOM05D004108 ORTHO05D004849 4.2e-43 178.3 142 62.7
Duzib093G0346 Durio zibethinus HOM05D004108 ORTHO05D004849 3.0e-41 172.2 150 58.0
Gohir.D01G103300 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.0e-41 172.2 148 56.8
Gorai.002G127100 Gossypium raimondii HOM05D004108 ORTHO05D004849 3.0e-41 172.2 148 56.8
Sabra02G0027700 Salix brachista HOM05D004108 ORTHO05D004849 3.0e-41 172.2 144 60.4
TWI56G1092 Tripterygium wilfordii HOM05D004108 ORTHO05D004849 6.7e-41 171.0 147 57.8
Duzib116G0345 Durio zibethinus HOM05D004108 ORTHO05D004849 5.7e-40 167.9 142 57.7
Gohir.A01G114900 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.7e-40 167.2 148 54.7
COL.COLO4_26289 Corchorus olitorius HOM05D004108 ORTHO05D004849 2.8e-39 165.6 151 58.3
GSVIVG01009730001 Vitis vinifera HOM05D004108 ORTHO05D004849 2.4e-38 162.5 141 59.6
Gohir.A05G192800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 6.9e-38 161.0 148 56.1
Gohir.D05G196000 Gossypium hirsutum HOM05D004108 ORTHO05D004849 2.6e-37 159.1 148 55.4
Gorai.009G200900 Gossypium raimondii HOM05D004108 ORTHO05D004849 2.6e-37 159.1 148 55.4
Glyma.06G031000 Glycine max HOM05D004108 ORTHO05D004849 7.7e-37 157.5 141 58.2
CiPaw.15G080700 Carya illinoinensis HOM05D004108 ORTHO05D004849 1.3e-36 156.8 143 58.0
Ciclev10002766m.g Citrus clementina HOM05D004108 ORTHO05D004849 1.7e-36 156.4 143 54.5
TAR381G0780 Trochodendron aralioides HOM05D004108 ORTHO05D004849 2.9e-36 155.6 117 61.5
Lalb_Chr08g0245901 Lupinus albus HOM05D004108 ORTHO05D004849 3.8e-36 155.2 143 56.6
Glyma.04G030900 Glycine max HOM05D004108 ORTHO05D004849 1.4e-35 153.3 146 56.2
QL02p009008 Quercus lobata HOM05D004108 ORTHO05D004849 1.9e-35 152.9 143 55.2
Cfa018174 Carpinus fangiana HOM05D004108 ORTHO05D004849 3.2e-35 152.1 139 57.6
TPR.G20143 Trifolium pratense HOM05D004108 ORTHO05D004849 3.2e-35 152.1 139 54.7
Glyma.17G251800 Glycine max HOM05D004108 ORTHO05D004849 4.2e-35 151.8 146 52.7
Ca_13362_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 5.5e-35 151.4 141 53.2
PGR083G0993 Punica granatum HOM05D004108 ORTHO05D004849 2.1e-34 149.4 141 53.2
Cc10_g02670 Coffea canephora HOM05D004108 ORTHO05D004849 2.7e-34 149.1 151 55.6
PGSC0003DMG400003688 Solanum tuberosum HOM05D004108 ORTHO05D004849 2.7e-34 149.1 150 54.7
Glyma.14G073200 Glycine max HOM05D004108 ORTHO05D004849 4.6e-34 148.3 136 54.4
VMungo0647G0771 Vigna mungo HOM05D004108 ORTHO05D004849 6.1e-34 147.9 150 52.7
Lj5g0010725 Lotus japonicus HOM05D004108 ORTHO05D004849 7.9e-34 147.5 135 54.8
CSS0043508 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 1.0e-33 147.1 152 52.6
Rhsim06G0031200 Rhododendron simsii HOM05D004108 ORTHO05D004849 1.0e-33 147.1 144 51.4
Psat6g008240 Pisum sativum HOM05D004108 ORTHO05D004849 1.4e-33 146.7 141 53.2
Medtr3g111970 Medicago truncatula HOM05D004108 ORTHO05D004849 1.8e-33 146.4 143 53.1
Ca_15505_v3 Cicer arietinum L. HOM05D004108 ORTHO05D004849 3.0e-33 145.6 146 53.4
MSTRG.22304 Avicennia marina HOM05D004108 ORTHO05D004849 3.9e-33 145.2 149 52.3
Medtr1g022395 Medicago truncatula HOM05D004108 ORTHO05D004849 1.1e-32 143.7 140 52.9
Hma1.2p1_0203F.1_g086230 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 1.5e-32 143.3 145 53.1
CSS0044578 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.5e-32 142.5 151 51.7
MELO3C003817.2 Cucumis melo HOM05D004108 ORTHO05D004849 2.5e-32 142.5 141 47.5
Gorai.009G272400 Gossypium raimondii HOM05D004108 ORTHO05D004849 5.7e-32 141.4 145 54.5
Phvul.001G013200 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 5.7e-32 141.4 142 53.5
Haze_17929 Corylus avellana HOM05D004108 ORTHO05D004849 7.4e-32 141.0 118 58.5
Gohir.A05G258800 Gossypium hirsutum HOM05D004108 ORTHO05D004849 9.7e-32 140.6 145 53.8
Sopen04g034130 Solanum pennellii HOM05D004108 ORTHO05D004849 9.7e-32 140.6 151 55.0
Psat5g012160 Pisum sativum HOM05D004108 ORTHO05D004849 1.7e-31 139.8 141 53.9
Solyc04g080540.2 Solanum lycopersicum HOM05D004108 ORTHO05D004849 2.2e-31 139.4 151 54.3
Nitab4.5_0002224g0100 Nicotiana tabacum HOM05D004108 ORTHO05D004849 2.8e-31 139.0 151 51.0
CsaV3_3G045320 Cucumis sativus L. HOM05D004108 ORTHO05D004849 3.7e-31 138.7 141 46.8
Gohir.D05G260600 Gossypium hirsutum HOM05D004108 ORTHO05D004849 3.7e-31 138.7 145 53.1
Lj1g0012803 Lotus japonicus HOM05D004108 ORTHO05D004849 3.7e-31 138.7 141 51.1
Actinidia22531 Actinidia chinensis HOM05D004108 ORTHO05D004849 4.8e-31 138.3 147 51.0
MSTRG.24284 Avicennia marina HOM05D004108 ORTHO05D004849 6.3e-31 137.9 149 51.7
DCAR_019539 Daucus carota HOM05D001676 ORTHO05D001539 6.3e-31 137.9 144 50.7
Sc15g0007040 Simmondsia chinensis HOM05D004108 ORTHO05D004849 3.1e-30 135.6 146 50.0
Oeu007023.1 Olea europaea HOM05D004108 ORTHO05D004849 6.9e-30 134.4 146 46.6
Glyma.06G031100 Glycine max HOM05D004108 ORTHO05D004849 1.5e-29 133.3 141 51.1
VMungo1309G0255 Vigna mungo HOM05D004108 ORTHO05D004849 4.5e-29 131.7 146 49.3
Atru.chr13.446 Acer truncatum HOM05D004108 ORTHO05D004849 1.0e-28 130.6 140 48.6
Eucgr.F01582 Eucalyptus grandis HOM05D004108 ORTHO05D004849 1.0e-28 130.6 138 48.6
Dinv36099 Davidia involucrata HOM05D004108 ORTHO05D004849 1.3e-28 130.2 120 52.5
SGA_v2.0_scaffold326G48731 Striga asiatica HOM05D004108 ORTHO05D004849 1.3e-28 130.2 148 48.0
Phvul.009G058900 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.7e-28 129.8 154 47.4
MELO3C010952.2 Cucumis melo HOM05D004108 ORTHO05D004849 3.8e-28 128.6 149 49.0
Aqoxy5G01593 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 6.5e-28 127.9 150 46.7
TPR.G12369 Trifolium pratense HOM05D004108 ORTHO05D004849 1.9e-27 126.3 154 46.1
CsaV3_2G028830 Cucumis sativus L. HOM05D004108 ORTHO05D004849 2.5e-27 125.9 143 46.9
Sed0024175 Sechium edule HOM05D004108 ORTHO05D004849 5.5e-27 124.8 143 49.7
CANSAT25G1850 Cannabis sativa HOM05D004108 ORTHO05D004849 1.6e-26 123.2 150 46.0
ClCG08G014950 Citrullus lanatus HOM05D004108 ORTHO05D004849 2.7e-26 122.5 144 48.6
Sed0010517 Sechium edule HOM05D004108 ORTHO05D004849 3.6e-26 122.1 145 46.2
ATR0568G230 Amborella trichopoda HOM05D004108 ORTHO05D004849 1.0e-25 120.6 142 43.0
Lalb_Chr14g0369381 Lupinus albus HOM05D004108 ORTHO05D004849 1.0e-25 120.6 138 50.0
AUR62003937 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.3e-25 119.4 151 46.4
AUR62014478 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.3e-25 119.4 151 46.4
EL10Ac1g00610 Beta vulgaris HOM05D004108 ORTHO05D004849 6.7e-25 117.9 146 43.2
Hund26890 Selenicereus undatus HOM05D004108 ORTHO05D004849 3.3e-24 115.5 146 41.8
Hund29908 Selenicereus undatus HOM05D004108 ORTHO05D004849 3.3e-24 115.5 146 41.8
Cpa.g.sc31.39 Carica papaya HOM05D004108 ORTHO05D004849 4.4e-24 115.2 118 47.5
CDE02G0765 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 5.7e-24 114.8 148 40.5
PSO675G8146 Papaver somniferum HOM05D004108 ORTHO05D004849 9.7e-24 114.0 137 43.1
MBI10_g18267_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 1.3e-23 113.6 145 45.5
Rhsim07G0240700 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.2e-23 112.8 134 45.5
RhsimUnG0051600 Rhododendron simsii HOM05D004108 ORTHO05D004849 2.2e-23 112.8 146 44.5
PSO541G2330 Papaver somniferum HOM05D004108 ORTHO05D004849 8.2e-23 110.9 138 42.0
C05p18030 Brassica napus HOM05D004108 ORTHO05D004849 3.1e-22 109.0 140 46.4
CDE06G1682 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.1e-22 108.6 139 41.0
Migut.N00486 Erythranthe guttata HOM05D004108 ORTHO05D004849 5.3e-22 108.2 133 46.6
unitig_899.g15617 Utricularia gibba HOM05D004108 ORTHO05D004849 5.3e-22 108.2 136 46.3
MD08G1029700 Malus domestica HOM05D004108 ORTHO05D004849 7.0e-22 107.8 141 44.0
Prupe.1G377400 Prunus persica HOM05D004108 ORTHO05D004849 7.0e-22 107.8 140 41.4
Eucgr.F01583 Eucalyptus grandis HOM05D004108 ORTHO05D004849 9.1e-22 107.5 165 39.4
BcaC05g25839 Brassica carinata HOM05D004108 ORTHO05D004849 1.2e-21 107.1 134 45.5
BolC5t30510H Brassica oleracea HOM05D004108 ORTHO05D004849 1.2e-21 107.1 134 45.5
BcaB07g31980 Brassica carinata HOM05D004108 ORTHO05D004849 1.5e-21 106.7 134 45.5
HanXRQChr05g0156841 Helianthus annuus HOM05D004108 ORTHO05D004849 1.5e-21 106.7 138 42.0
A06p15710 Brassica napus HOM05D004108 ORTHO05D004849 2.6e-21 105.9 134 45.5
Rhsim06G0031500 Rhododendron simsii HOM05D004108 ORTHO05D004849 3.4e-21 105.5 115 46.1
Carub.0001s1910 Capsella rubella HOM05D004108 ORTHO05D004849 4.5e-21 105.1 134 44.8
Nn2g14293 Nelumbo nucifera HOM05D004108 ORTHO05D004849 4.5e-21 105.1 117 48.7
Nitab4.5_0001759g0080 Nicotiana tabacum HOM05D004108 ORTHO05D004849 5.9e-21 104.8 103 53.4
BraA06t24680Z Brassica rapa HOM05D004108 ORTHO05D004849 7.7e-21 104.4 134 44.8
FAN15G0289 Fragaria x ananassa HOM05D004108 ORTHO05D004849 7.7e-21 104.4 148 43.2
DCAR_020978 Daucus carota HOM05D004108 ORTHO05D004849 1.0e-20 104.0 127 47.2
THA.LOC104811375 Tarenaya hassleriana HOM05D004108 ORTHO05D004849 1.0e-20 104.0 147 41.5
FAN27G1128 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.7e-20 103.2 149 42.3
Sp1g17400 Schrenkiella parvula HOM05D004108 ORTHO05D004849 1.7e-20 103.2 136 43.4
Lsat_1_v5_gn_5_27881 Lactuca sativa HOM05D004108 ORTHO05D004849 2.2e-20 102.8 134 42.5
CANSAT25G0460 Cannabis sativa HOM05D004108 ORTHO05D004849 2.9e-20 102.4 141 46.1
HPP92_003110 Vanilla planifolia HOM05D004108 ORTHO05D004849 3.8e-20 102.1 138 41.3
CARHR020100 Cardamine hirsuta HOM05D004108 ORTHO05D004849 5.0e-20 101.7 134 43.3
ECA246G2053 Erigeron canadensis HOM05D004108 ORTHO05D004849 8.5e-20 100.9 142 40.1
FvH4_2g39630 Fragaria vesca HOM05D004108 ORTHO05D004849 8.5e-20 100.9 150 43.3
Lsat_1_v5_gn_4_117601 Lactuca sativa HOM05D004108 ORTHO05D004849 8.5e-20 100.9 132 45.5
MBI18_g38882_MAGBIO Magnolia biondii HOM05D004108 ORTHO05D004849 4.2e-19 98.6 142 44.4
RcHm_v2.0_Chr6g0301271 Rosa chinensis HOM05D004108 ORTHO05D004849 4.2e-19 98.6 141 43.3
AL1G32280 Arabidopsis lyrata HOM05D004108 ORTHO05D004849 5.5e-19 98.2 139 41.0
FAN20G2373 Fragaria x ananassa HOM05D004108 ORTHO05D004849 1.2e-18 97.1 150 41.3
Os03g0826800 Oryza sativa ssp. japonica HOM05D004108 ORTHO05D004849 2.1e-18 96.3 145 42.1
Thhalv10009139m.g Eutrema salsugineum HOM05D004108 ORTHO05D004849 8.0e-18 94.4 142 41.5
Glyma.18G124300 Glycine max HOM05D004108 ORTHO05D004849 8.0e-18 94.4 107 51.4
ECA232G2533 Erigeron canadensis HOM05D004108 ORTHO05D004849 1.4e-17 93.6 134 44.8
Phvul.009G058800 Phaseolus vulgaris HOM05D004108 ORTHO05D004849 1.4e-17 93.6 141 41.1
AT1G19530 Arabidopsis thaliana HOM05D004108 ORTHO05D004849 1.8e-17 93.2 139 40.3
ClCG05G018840 Citrullus lanatus HOM05D004108 ORTHO05D004849 1.8e-17 93.2 103 48.5
Peaxi162Scf00020g01711 Petunia axillaris HOM05D004108 ORTHO05D004849 3.0e-17 92.4 95 48.4
HanXRQChr16g0501561 Helianthus annuus HOM05D004108 ORTHO05D004849 5.2e-17 91.7 133 42.9
Hma1.2p1_0203F.1_g086240 Hydrangea macrophylla HOM05D004108 ORTHO05D004849 5.2e-17 91.7 110 46.4
Aa31LG7G4180 Aethionema arabicum HOM05D004108 ORTHO05D004849 8.8e-17 90.9 133 39.8
AagrBONN_evm.TU.Sc2ySwM_344.1816 Anthoceros agrestis HOM05D004108 ORTHO05D004849 2.0e-16 89.7 150 37.3
arahy.Tifrunner.gnm1.ann1.FG8SZ8 Arachis hypogaea HOM05D004108 ORTHO05D004849 1.7e-15 86.7 139 38.1
arahy.Tifrunner.gnm1.ann1.9Q97AW Arachis hypogaea HOM05D004108 ORTHO05D004849 3.7e-15 85.5 147 38.1
SEGI_02312 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 3.7e-15 85.5 149 39.6
arahy.Tifrunner.gnm1.ann1.KZM1SZ Arachis hypogaea HOM05D004108 ORTHO05D004849 1.4e-14 83.6 103 47.6
arahy.Tifrunner.gnm1.ann1.RL39CN Arachis hypogaea HOM05D004108 ORTHO05D004849 1.4e-14 83.6 103 47.6
Mapoly0085s0006 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.8e-14 83.2 134 36.6
Sc02g0005700 Simmondsia chinensis HOM05D004108 ORTHO05D004849 1.8e-14 83.2 77 55.8
Actinidia38001 Actinidia chinensis HOM05D004108 ORTHO05D004849 2.4e-14 82.8 105 42.9
CDE11G1036 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 4.1e-14 82.0 144 38.2
Actinidia30825 Actinidia chinensis HOM05D004108 ORTHO05D004849 9.1e-14 80.9 94 47.9
Mapoly0203s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.2e-13 80.5 132 37.9
SEGI_30411 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 1.6e-13 80.1 146 36.3
Aqoxy3G01077 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 2.0e-13 79.7 132 37.1
CSS0033768 Camellia sinensis var. sinensis HOM05D004108 ORTHO05D004849 2.6e-13 79.3 56 64.3
Mapoly0087s0044 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.6e-13 79.3 147 29.3
SEGI_15325 Sequoiadendron giganteum HOM05D004108 ORTHO05D004849 5.9e-13 78.2 156 37.8
Aqoxy3G01079 Aquilegia oxysepala HOM05D004108 ORTHO05D004849 7.7e-13 77.8 138 34.8
HPP92_010562 Vanilla planifolia HOM05D004108 ORTHO05D004849 7.7e-13 77.8 138 37.7
Mapoly0212s0008 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-12 77.4 131 34.4
CDE05G3574 Ceratophyllum demersum HOM05D004108 ORTHO05D004849 1.3e-12 77.0 144 37.5
Mapoly0212s0009 Marchantia polymorpha HOM05D004108 ORTHO05D004849 6.5e-12 74.7 145 31.0
PGSC0003DMG400005376 Solanum tuberosum HOM05D004108 ORTHO05D004849 1.9e-11 73.2 57 57.9
Mapoly0085s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.2e-11 72.0 146 30.1
Peaxi162Scf00303g00058 Petunia axillaris HOM05D004108 ORTHO05D004849 4.2e-11 72.0 95 42.1
Pp3c16_7660 Physcomitrium patens HOM05D004108 ORTHO05D004849 9.4e-11 70.9 134 32.1
Mapoly0087s0045 Marchantia polymorpha HOM05D004108 ORTHO05D004849 2.1e-10 69.7 148 31.8
AUR62014477 Chenopodium quinoa HOM05D004108 ORTHO05D004849 2.7e-10 69.3 50 58.0
Mapoly0152s0035 Marchantia polymorpha HOM05D004108 ORTHO05D004849 4.7e-10 68.6 142 35.2
Mapoly0212s0007 Marchantia polymorpha HOM05D004108 ORTHO05D004849 1.0e-09 67.4 140 28.6
Pp3c20_22930 Physcomitrium patens HOM05D004108 ORTHO05D004849 6.7e-09 64.7 140 31.4
Mapoly0037s0069 Marchantia polymorpha HOM05D004108 ORTHO05D004849 8.8e-09 64.3 151 28.5
unitig_747.g21673 Utricularia gibba HOM05D004108 ORTHO05D004849 2.0e-08 63.2 136 33.8
Actinidia29817 Actinidia chinensis HOM05D004108 ORTHO05D004849 5.7e-08 61.6 40 62.5
SMO348G0043 Selaginella moellendorffii HOM05D004108 ORTHO05D004849 7.5e-08 61.2 154 33.8
Sc26g0003380 Simmondsia chinensis HOM05D004108 ORTHO05D004849 2.2e-07 59.7 78 47.4
Nitab4.5_0004768g0030 Nicotiana tabacum HOM05D004108 ORTHO05D004849 3.1e-06 55.8 103 35.0
Peaxi162Scf00328g00118 Petunia axillaris HOM05D003374 ORTHO05D009470 7.0e-06 54.7 110 31.8


User provided reference genes

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