Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 4.1e-78 294.7 150 100.0
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 2.9e-71 271.9 150 93.3
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 2.4e-70 268.9 150 90.7
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 1.2e-53 213.4 151 73.5
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 1.7e-52 209.5 156 71.2
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 3.3e-51 205.3 142 71.1
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 4.3e-51 204.9 148 70.3
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 2.1e-50 202.6 144 71.5
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 2.1e-50 202.6 154 68.8
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 3.6e-50 201.8 143 70.6
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 1.4e-49 199.9 123 78.0
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 1.4e-49 199.9 148 69.6
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 2.4e-49 199.1 167 64.7
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 2.4e-49 199.1 163 65.6
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 3.1e-49 198.7 149 67.8
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 5.2e-49 198.0 148 69.6
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 6.9e-49 197.6 148 67.6
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 3.4e-48 195.3 155 65.2
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 3.4e-48 195.3 156 64.7
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 7.6e-48 194.1 156 64.7
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 9.9e-48 193.7 144 70.8
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 9.9e-48 193.7 146 70.5
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 9.9e-48 193.7 146 67.8
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 3.8e-47 191.8 156 60.9
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 1.1e-46 190.3 150 64.7
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.4e-46 189.9 152 65.1
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 5.4e-46 188.0 122 76.2
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 2.7e-45 185.7 146 65.1
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 2.7e-45 185.7 149 65.8
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 7.8e-45 184.1 149 63.8
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 1.7e-44 183.0 131 68.7
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 1.7e-44 183.0 149 61.7
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.7e-44 183.0 138 65.2
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 3.0e-44 182.2 139 63.3
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 3.0e-44 182.2 124 71.8
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 3.0e-44 182.2 141 62.4
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 3.9e-44 181.8 146 62.3
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 3.9e-44 181.8 123 71.5
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 5.1e-44 181.4 149 61.7
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 5.1e-44 181.4 155 60.6
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 6.6e-44 181.0 154 61.0
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 8.7e-44 180.6 146 59.6
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 8.7e-44 180.6 146 62.3
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 1.5e-43 179.9 146 61.6
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 1.5e-43 179.9 155 61.3
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 1.9e-43 179.5 141 62.4
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 2.5e-43 179.1 147 59.9
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 3.3e-43 178.7 124 67.7
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 3.3e-43 178.7 155 61.3
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 3.3e-43 178.7 143 61.5
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 3.3e-43 178.7 142 61.3
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 4.3e-43 178.3 144 62.5
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 7.3e-43 177.6 146 63.7
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 7.3e-43 177.6 149 59.7
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 1.3e-42 176.8 127 68.5
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 1.6e-42 176.4 146 58.9
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 2.1e-42 176.0 144 63.9
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 3.6e-42 175.3 151 59.6
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 4.8e-42 174.9 146 62.3
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 8.1e-42 174.1 141 59.6
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 8.1e-42 174.1 146 62.3
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 1.1e-41 173.7 139 59.7
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 2.4e-41 172.6 147 61.2
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 2.4e-41 172.6 132 64.4
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 3.1e-41 172.2 148 60.8
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 4.0e-41 171.8 147 60.5
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 4.0e-41 171.8 147 61.2
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 6.9e-41 171.0 153 60.1
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 6.9e-41 171.0 145 63.4
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 1.2e-40 170.2 123 66.7
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 1.2e-40 170.2 123 66.7
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 1.2e-40 170.2 142 57.0
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 1.5e-40 169.9 144 62.5
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 2.0e-40 169.5 146 62.3
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 4.5e-40 168.3 149 60.4
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 5.8e-40 167.9 146 61.0
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 5.8e-40 167.9 146 61.0
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 7.6e-40 167.5 146 61.0
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 9.9e-40 167.2 147 61.2
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 4.9e-39 164.9 152 59.2
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 4.9e-39 164.9 152 59.2
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 4.9e-39 164.9 142 57.0
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.4e-39 164.5 142 62.0
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 2.4e-38 162.5 144 56.9
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 9.3e-38 160.6 141 57.4
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 1.2e-37 160.2 115 67.8
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 1.6e-37 159.8 146 58.9
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 6.0e-37 157.9 158 54.4
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 6.0e-37 157.9 123 61.8
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 1.3e-36 156.8 129 59.7
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 3.9e-36 155.2 128 62.5
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 3.9e-36 155.2 149 58.4
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 3.9e-36 155.2 122 61.5
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 1.1e-35 153.7 145 53.1
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 5.3e-33 144.8 109 66.1
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 1.2e-32 143.7 106 67.9
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 3.5e-29 132.1 104 65.4
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 4.0e-25 118.6 168 40.5
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 5.3e-25 118.2 97 64.9
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 4.5e-24 115.2 83 68.7
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 2.2e-18 96.3 109 43.1
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.7e-15 86.7 108 44.4
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 8.5e-15 84.3 67 65.7
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 6.1e-13 78.2 77 55.8
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 7.9e-13 77.8 108 38.9
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 1.8e-12 76.6 110 40.9
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 7.4e-11 71.2 103 41.7
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 4.8e-10 68.6 110 38.2
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 8.2e-10 67.8 58 62.1
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 2.4e-09 66.2 58 62.1
Mapoly0022s0141 Marchantia polymorpha HOM05D021038 ORTHO05D009018 7.7e-08 61.2 110 33.6
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 1.7e-07 60.1 88 38.6
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 2.2e-07 59.7 88 38.6
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 5.0e-07 58.5 88 39.8
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 6.5e-07 58.2 110 32.7
Pp3c11_23110 Physcomitrium patens HOM05D003750 ORTHO05D004337 1.1e-06 57.4 119 32.8
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 1.1e-06 57.4 81 39.5
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 1.4e-06 57.0 86 36.0
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.4e-06 57.0 112 33.0
HanXRQChr17g0565191 Helianthus annuus HOM05D003750 ORTHO05D004337 1.9e-06 56.6 111 31.5
HanXRQChr17g0565441 Helianthus annuus HOM05D003750 ORTHO05D004337 1.9e-06 56.6 111 31.5
HanXRQChr17g0565471 Helianthus annuus HOM05D003750 ORTHO05D004337 1.9e-06 56.6 111 31.5
HanXRQChr17g0565481 Helianthus annuus HOM05D003750 ORTHO05D004337 1.9e-06 56.6 113 31.9
Sc15g0002430 Simmondsia chinensis HOM05D003750 ORTHO05D004337 1.9e-06 56.6 112 34.8
Manes.01G128300 Manihot esculenta HOM05D003750 ORTHO05D004337 2.5e-06 56.2 88 36.4
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.5e-06 56.2 110 30.9
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 3.2e-06 55.8 105 34.3
Sed0014259 Sechium edule HOM05D003750 ORTHO05D004337 3.2e-06 55.8 88 36.4
unitig_37.g12854 Utricularia gibba HOM05D003750 ORTHO05D004337 3.2e-06 55.8 103 34.0
ATR0414G002 Amborella trichopoda HOM05D007363 ORTHO05D009018 4.2e-06 55.5 96 36.5
Oeu020066.1 Olea europaea HOM05D003750 ORTHO05D004337 4.2e-06 55.5 110 33.6
SalBow7G1469 Salvia bowleyana HOM05D003750 ORTHO05D004337 4.2e-06 55.5 112 33.9
Sopen12g006370 Solanum pennellii HOM05D003750 ORTHO05D004337 5.5e-06 55.1 111 32.4
SGA_v2.0_scaffold70G23672 Striga asiatica HOM05D003750 ORTHO05D004337 5.5e-06 55.1 88 37.5
PGR142G2515 Punica granatum HOM05D003750 ORTHO05D004337 7.2e-06 54.7 108 36.1
MSTRG.15053 Avicennia marina HOM05D003750 ORTHO05D004337 9.4e-06 54.3 74 44.6
ECA246G0286 Erigeron canadensis HOM05D003750 ORTHO05D004337 9.4e-06 54.3 88 36.4
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 9.4e-06 54.3 86 34.9


User provided reference genes

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