Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G224500 Populus trichocarpa HOM05D004208 ORTHO05D005156 4.6e-264 914.1 486 100.0
Sabra05G0173200 Salix brachista HOM05D004208 ORTHO05D005156 4.2e-233 811.2 501 87.4
Potri.002G038300 Populus trichocarpa HOM05D004208 ORTHO05D005156 5.4e-220 767.7 486 85.4
Sabra02G0030700 Salix brachista HOM05D004208 ORTHO05D005156 8.9e-207 723.8 457 86.0
Manes.12G032400 Manihot esculenta HOM05D004208 ORTHO05D005156 2.4e-204 715.7 486 76.3
Manes.13G034400 Manihot esculenta HOM05D004208 ORTHO05D005156 1.5e-198 696.4 486 73.3
Gohir.D08G208600 Gossypium hirsutum HOM05D004208 ORTHO05D005156 2.4e-188 662.5 486 70.8
Thecc.01G258100 Theobroma cacao HOM05D004208 ORTHO05D005156 2.4e-188 662.5 486 69.8
Gorai.004G221000 Gossypium raimondii HOM05D004208 ORTHO05D005156 1.6e-187 659.8 486 70.6
COL.COLO4_05893 Corchorus olitorius HOM05D004208 ORTHO05D005156 2.1e-187 659.4 495 69.5
Gohir.A08G190100 Gossypium hirsutum HOM05D004208 ORTHO05D005156 7.8e-187 657.5 486 71.0
Duzib138G0474 Durio zibethinus HOM05D004208 ORTHO05D005156 5.6e-185 651.4 486 68.9
Duzib133G1203 Durio zibethinus HOM05D004208 ORTHO05D005156 1.2e-179 633.6 486 67.7
Atru.chr5.1689 Acer truncatum HOM05D004208 ORTHO05D005156 1.0e-178 630.6 487 70.8
PGR031G1029 Punica granatum HOM05D004208 ORTHO05D005156 1.2e-174 617.1 491 66.0
GSVIVG01028335001 Vitis vinifera HOM05D004208 ORTHO05D005156 1.2e-174 617.1 489 69.3
CANSAT01G2107 Cannabis sativa HOM05D004208 ORTHO05D005156 4.9e-173 611.7 492 65.7
Prupe.8G223600 Prunus persica HOM05D004208 ORTHO05D005156 4.9e-173 611.7 487 65.5
Cfa012194 Carpinus fangiana HOM05D004208 ORTHO05D005156 1.9e-172 609.8 462 67.7
Dinv22405 Davidia involucrata HOM05D004208 ORTHO05D005156 4.6e-171 605.1 492 64.2
CiPaw.11G131900 Carya illinoinensis HOM05D004208 ORTHO05D005156 6.0e-171 604.7 462 67.7
TAR636G1466 Trochodendron aralioides HOM05D004208 ORTHO05D005156 6.0e-171 604.7 488 64.5
Hma1.2p1_0273F.1_g109690 Hydrangea macrophylla HOM05D004208 ORTHO05D005156 8.7e-170 600.9 491 67.4
CSS0038412 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 2.8e-168 595.9 490 66.5
CSS0041954 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 3.7e-168 595.5 490 65.7
TWI32G0756 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 4.8e-168 595.1 486 65.4
Lj2A1151T32 Lonicera japonica HOM05D004208 ORTHO05D005156 1.1e-167 594.0 497 64.2
Ciclev10019992m.g Citrus clementina HOM05D004208 ORTHO05D005156 1.4e-167 593.6 487 68.2
QL12p032241 Quercus lobata HOM05D004208 ORTHO05D005156 1.0e-165 587.4 461 69.6
Haze_08822 Corylus avellana HOM05D004208 ORTHO05D005156 2.2e-165 586.3 493 62.7
Sed0003224 Sechium edule HOM05D004208 ORTHO05D005156 1.9e-164 583.2 486 62.8
FAN17G2653 Fragaria x ananassa HOM05D004208 ORTHO05D005156 4.2e-164 582.0 486 63.8
Actinidia07297 Actinidia chinensis HOM05D004208 ORTHO05D005156 7.1e-164 581.3 494 64.6
Actinidia25791 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-162 577.4 508 61.6
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 1.8e-162 576.6 486 60.3
RcHm_v2.0_Chr6g0288111 Rosa chinensis HOM05D004208 ORTHO05D005156 1.5e-161 573.5 486 63.8
FvH4_4g12040 Fragaria vesca HOM05D004208 ORTHO05D005156 1.6e-160 570.1 486 63.0
CsaV3_5G028820 Cucumis sativus L. HOM05D004208 ORTHO05D005156 4.8e-160 568.5 487 61.2
AL4G32160 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 1.0e-157 560.8 486 59.1
FAN07G0785 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.8e-157 558.9 517 58.6
AT2G36070 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 8.5e-157 557.8 486 58.8
FvH4_2g21470 Fragaria vesca HOM05D004208 ORTHO05D005156 1.8e-154 550.1 486 62.6
MD05G1197100 Malus domestica HOM05D004208 ORTHO05D005156 3.0e-154 549.3 495 60.4
Sed0002598 Sechium edule HOM05D004208 ORTHO05D005156 6.7e-154 548.1 487 60.2
Eucgr.G01944 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.5e-153 547.0 399 69.2
Sopen01g041810 Solanum pennellii HOM05D004208 ORTHO05D005156 1.5e-153 547.0 499 60.5
FAN27G3501 Fragaria x ananassa HOM05D004208 ORTHO05D005156 7.4e-153 544.7 476 60.5
Solyc01g098230.3 Solanum lycopersicum HOM05D004208 ORTHO05D005156 7.4e-153 544.7 499 60.1
Thhalv10001977m.g Eutrema salsugineum HOM05D004208 ORTHO05D005156 1.3e-152 543.9 487 58.1
FAN20G2986 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.7e-152 542.3 478 60.0
Glyma.04G107400 Glycine max HOM05D004208 ORTHO05D005156 8.2e-152 541.2 486 60.5
Carub.0004s1781 Capsella rubella HOM05D004208 ORTHO05D005156 2.4e-151 539.7 486 56.8
CDE03G0182 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 2.0e-150 536.6 488 57.2
CAN.G134.214 Capsicum annuum HOM05D004208 ORTHO05D005156 7.7e-150 534.6 496 58.5
Peaxi162Scf00225g00519 Petunia axillaris HOM05D004208 ORTHO05D005156 1.3e-149 533.9 511 57.9
FAN15G2877 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.2e-149 533.1 509 57.4
PSO339G3828 Papaver somniferum HOM05D004208 ORTHO05D005156 1.4e-148 530.4 490 58.0
AL3G53520 Arabidopsis lyrata HOM05D004208 ORTHO05D005156 3.2e-148 529.3 486 55.8
AUR62030125 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.2e-148 529.3 491 56.4
Migut.O00608 Erythranthe guttata HOM05D004208 ORTHO05D005156 4.6e-147 525.4 500 58.4
Phvul.005G002100 Phaseolus vulgaris HOM05D004208 ORTHO05D005156 1.4e-146 523.9 489 59.1
FAN24G2300 Fragaria x ananassa HOM05D004208 ORTHO05D005156 3.0e-146 522.7 462 60.6
AUR62038602 Chenopodium quinoa HOM05D004208 ORTHO05D005156 3.9e-146 522.3 491 56.0
Actinidia09547 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.5e-145 520.4 494 58.3
Ah.03g147410 Amaranthus hybridus HOM05D004208 ORTHO05D005156 3.3e-145 519.2 493 56.8
Rhsim01G0263600 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.4e-145 518.8 495 60.2
Migut.N01348 Erythranthe guttata HOM05D004208 ORTHO05D005156 9.7e-145 517.7 500 57.8
SalBow1G3185 Salvia bowleyana HOM05D004208 ORTHO05D005156 9.7e-145 517.7 492 56.7
THA.LOC104805532 Tarenaya hassleriana HOM05D004208 ORTHO05D005156 2.2e-144 516.5 487 58.5
Cc01_g18340 Coffea canephora HOM05D004208 ORTHO05D005156 8.2e-144 514.6 500 56.0
Nitab4.5_0000245g0150 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.5e-142 510.4 489 57.5
AT2G20510 Arabidopsis thaliana HOM05D004208 ORTHO05D005156 5.9e-142 508.4 486 56.0
EL10Ac7g17258 Beta vulgaris HOM05D004208 ORTHO05D005156 1.0e-141 507.7 460 56.7
HanXRQChr16g0512021 Helianthus annuus HOM05D004208 ORTHO05D005156 1.7e-141 506.9 495 58.2
TWI34G1830 Tripterygium wilfordii HOM05D004208 ORTHO05D005156 1.7e-141 506.9 486 57.0
Dinv34629 Davidia involucrata HOM05D004208 ORTHO05D005156 2.9e-141 506.1 430 64.2
Psat7g228960 Pisum sativum HOM05D004208 ORTHO05D005156 3.8e-141 505.8 486 55.1
Ah.02g120380 Amaranthus hybridus HOM05D004208 ORTHO05D005156 1.1e-140 504.2 492 54.1
VMungo1080G0701 Vigna mungo HOM05D004208 ORTHO05D005156 1.4e-140 503.8 486 57.2
Nn3g19657 Nelumbo nucifera HOM05D004208 ORTHO05D005156 4.2e-140 502.3 488 57.4
Ca_26001_v3 Cicer arietinum L. HOM05D004208 ORTHO05D005156 1.2e-139 500.7 493 55.0
Cpa.g.sc81.94 Carica papaya HOM05D004208 ORTHO05D005156 1.6e-139 500.4 454 60.1
Sp3g33730 Schrenkiella parvula HOM05D004208 ORTHO05D005156 2.7e-139 499.6 487 54.6
Oeu062471.2 Olea europaea HOM05D004208 ORTHO05D005156 3.6e-139 499.2 548 55.5
TAR362G0204 Trochodendron aralioides HOM05D004208 ORTHO05D005156 6.1e-139 498.4 445 60.2
RcHm_v2.0_Chr4g0409381 Rosa chinensis HOM05D004208 ORTHO05D005156 7.9e-139 498.0 423 61.0
BcaB07g31584 Brassica carinata HOM05D004208 ORTHO05D005156 1.8e-138 496.9 481 55.3
Eucgr.B01552 Eucalyptus grandis HOM05D004208 ORTHO05D005156 1.8e-138 496.9 509 56.2
Lsat_1_v5_gn_7_79121 Lactuca sativa HOM05D004208 ORTHO05D005156 1.8e-138 496.9 492 55.1
arahy.Tifrunner.gnm1.ann1.W57KUE Arachis hypogaea HOM05D004208 ORTHO05D005156 2.3e-138 496.5 520 54.4
MSTRG.16949 Avicennia marina HOM05D004208 ORTHO05D005156 8.8e-138 494.6 496 57.1
SGA_v2.0_scaffold32G13335 Striga asiatica HOM05D004208 ORTHO05D005156 1.1e-137 494.2 497 57.3
Lalb_Chr15g0090311 Lupinus albus HOM05D004208 ORTHO05D005156 1.5e-137 493.8 492 56.9
DCAR_005689 Daucus carota HOM05D004208 ORTHO05D005156 3.3e-137 492.7 509 53.8
Medtr2g083690 Medicago truncatula HOM05D004208 ORTHO05D005156 9.7e-137 491.1 486 55.3
SGA_v2.0_scaffold58G20323 Striga asiatica HOM05D004208 ORTHO05D005156 9.7e-137 491.1 406 64.0
BraA09t36939Z Brassica rapa HOM05D004208 ORTHO05D005156 1.3e-136 490.7 490 54.7
BcaB03g16846 Brassica carinata HOM05D004208 ORTHO05D005156 2.8e-136 489.6 487 54.0
BraA07t27815Z Brassica rapa HOM05D004208 ORTHO05D005156 5.3e-135 485.3 488 54.7
Peaxi162Scf00225g00527 Petunia axillaris HOM05D004208 ORTHO05D005156 5.3e-135 485.3 495 55.8
MBI10_g22594_MAGBIO Magnolia biondii HOM05D004208 ORTHO05D005156 7.0e-135 485.0 450 60.4
ATR0736G190 Amborella trichopoda HOM05D004208 ORTHO05D005156 1.2e-134 484.2 489 53.6
BcaC06g36740 Brassica carinata HOM05D004208 ORTHO05D005156 2.0e-134 483.4 487 56.7
A09p12940 Brassica napus HOM05D004208 ORTHO05D005156 3.5e-134 482.6 490 53.7
A07p00220 Brassica napus HOM05D004208 ORTHO05D005156 4.5e-134 482.3 489 54.6
BolC7t40497H Brassica oleracea HOM05D004208 ORTHO05D005156 4.5e-134 482.3 487 56.3
C09p15320 Brassica napus HOM05D004208 ORTHO05D005156 1.0e-133 481.1 489 53.8
FAN12G3775 Fragaria x ananassa HOM05D004208 ORTHO05D005156 2.9e-133 479.6 534 51.9
BolC9t54440H Brassica oleracea HOM05D004208 ORTHO05D005156 5.0e-133 478.8 490 53.3
CARHR130310 Cardamine hirsuta HOM05D004208 ORTHO05D005156 1.5e-132 477.2 486 54.1
BcaC04g22784 Brassica carinata HOM05D004208 ORTHO05D005156 4.2e-132 475.7 489 53.4
Carub.0003s3496 Capsella rubella HOM05D004208 ORTHO05D005156 9.4e-132 474.6 486 53.1
FAN12G0345 Fragaria x ananassa HOM05D004208 ORTHO05D005156 1.2e-131 474.2 534 51.5
Aqoxy2G03649 Aquilegia oxysepala HOM05D004208 ORTHO05D005156 1.4e-130 470.7 498 51.4
MELO3C033986.2 Cucumis melo HOM05D004208 ORTHO05D005156 3.0e-130 469.5 574 47.9
BcaB08g34912 Brassica carinata HOM05D004208 ORTHO05D005156 5.2e-130 468.8 474 52.5
Nitab4.5_0001165g0160 Nicotiana tabacum HOM05D004208 ORTHO05D005156 1.4e-127 460.7 453 57.4
arahy.Tifrunner.gnm1.ann1.M6MGA2 Arachis hypogaea HOM05D004208 ORTHO05D005156 5.3e-127 458.8 487 54.6
C07p00510 Brassica napus HOM05D004208 ORTHO05D005156 7.7e-126 454.9 487 54.2
CSS0015888 Camellia sinensis var. sinensis HOM05D004208 ORTHO05D005156 1.5e-121 440.7 461 56.6
Medtr4g075680 Medicago truncatula HOM05D004208 ORTHO05D005156 6.3e-120 435.3 486 49.8
TPR.G5025 Trifolium pratense HOM05D004208 ORTHO05D005156 8.3e-120 434.9 400 54.5
ECA236G3853 Erigeron canadensis HOM05D004208 ORTHO05D000364 1.6e-118 430.6 484 53.3
HPP92_012187 Vanilla planifolia HOM05D004208 ORTHO05D005156 6.5e-117 425.2 468 50.2
Zm00001eb111900 Zea mays HOM05D004208 ORTHO05D005156 1.9e-116 423.7 463 49.5
CDE04G1955 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 6.1e-115 418.7 390 55.1
Oeu042777.2 Olea europaea HOM05D004208 ORTHO05D005156 1.8e-111 407.1 502 50.8
Medtr4g029490 Medicago truncatula HOM05D004208 ORTHO05D005156 4.5e-110 402.5 486 48.4
Peaxi162Scf00118g00111 Petunia axillaris HOM05D004208 ORTHO05D005156 2.5e-100 370.2 395 54.2
Nitab4.5_0001526g0060 Nicotiana tabacum HOM05D004208 ORTHO05D005156 4.3e-100 369.4 449 49.9
Lj6g0013651 Lotus japonicus HOM05D004208 ORTHO05D005156 4.7e-99 365.9 488 44.3
Os07g0409700 Oryza sativa ssp. japonica HOM05D004208 ORTHO05D005156 4.0e-98 362.8 462 44.8
Nitab4.5_0007798g0030 Nicotiana tabacum HOM05D004208 ORTHO05D005156 3.0e-93 346.7 492 47.0
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 2.1e-91 340.5 412 49.3
Sc05g0000700 Simmondsia chinensis HOM05D004208 ORTHO05D005156 1.5e-89 334.3 341 56.3
Oeu021968.1 Olea europaea HOM05D004208 ORTHO05D005156 1.3e-88 331.3 488 45.9
PGSC0003DMG400022489 Solanum tuberosum HOM05D004208 ORTHO05D005156 1.3e-88 331.3 216 74.1
ClCG01G005870 Citrullus lanatus HOM05D004208 ORTHO05D005156 2.2e-88 330.5 216 71.8
CBR_g30902 Chara braunii HOM05D004208 ORTHO05D005156 4.1e-87 326.2 458 40.6
SMO353G0191 Selaginella moellendorffii HOM05D004208 ORTHO05D005156 5.6e-84 315.8 448 42.6
SEGI_36648 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.8e-82 308.9 408 45.6
Mapoly0070s0010 Marchantia polymorpha HOM05D004208 ORTHO05D005156 2.0e-81 307.4 372 45.7
Pp3c4_19960 Physcomitrium patens HOM05D004208 ORTHO05D005156 4.4e-81 306.2 321 47.7
Pp3c12_7570 Physcomitrium patens HOM05D004208 ORTHO05D005156 3.8e-80 303.1 343 46.1
AagrBONN_evm.TU.Sc2ySwM_344.3623 Anthoceros agrestis HOM05D004208 ORTHO05D005156 1.6e-75 287.7 299 49.5
unitig_746.g26574 Utricularia gibba HOM05D004208 ORTHO05D005156 3.1e-74 283.5 222 61.3
Lalb_Chr06g0171061 Lupinus albus HOM05D004208 ORTHO05D005156 4.5e-65 253.1 180 66.1
Lalb_Chr06g0171071 Lupinus albus HOM05D004208 ORTHO05D005156 8.1e-59 232.3 315 49.2
HanXRQChr10g0294161 Helianthus annuus HOM05D004208 ORTHO05D005156 8.2e-51 205.7 219 53.4
SHI09778 Sapria himalayana HOM05D004208 ORTHO05D005156 8.2e-51 205.7 270 46.7
Actinidia37513 Actinidia chinensis HOM05D004208 ORTHO05D005156 1.0e-48 198.7 156 64.1
SEGI_05587 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 3.8e-48 196.8 134 66.4
MCO02G332 Micromonas commoda HOM05D004208 ORTHO05D005156 2.5e-39 167.5 366 30.6
Cre16.g660800 Chlamydomonas reinhardtii HOM05D004208 ORTHO05D005156 2.5e-36 157.5 244 33.2
PRCOL_00004598 Prasinoderma coloniale HOM05D004208 ORTHO05D005156 2.5e-31 141.0 190 37.4
RcHm_v2.0_Chr5g0013581 Rosa chinensis HOM05D004208 ORTHO05D005156 4.7e-30 136.7 95 65.3
CAN.G279.25 Capsicum annuum HOM05D004208 ORTHO05D005156 7.4e-28 129.4 227 41.0
Glyma.09G002800 Glycine max HOM05D004208 ORTHO05D005156 1.1e-23 115.5 76 65.8
SEGI_40921 Sequoiadendron giganteum HOM05D004208 ORTHO05D005156 6.7e-21 106.3 70 65.7
Rhsim01G0263500 Rhododendron simsii HOM05D004208 ORTHO05D005156 4.5e-17 93.6 124 50.0
Atru.chr3.4028 Acer truncatum HOM05D004208 ORTHO05D005156 7.7e-17 92.8 60 70.0
Aqoxy5G04369 Aquilegia oxysepala HOM05D004870 ORTHO05D006061 9.4e-15 85.9 116 49.1
CDE04G1040 Ceratophyllum demersum HOM05D004208 ORTHO05D005156 3.1e-10 70.9 74 52.7
MD09G1008600 Malus domestica HOM05D004208 ORTHO05D005156 3.5e-09 67.4 55 56.4
QL04p049599 Quercus lobata HOM05D000196 ORTHO05D000279 3.5e-09 67.4 43 72.1
FvH4_3g18772 Fragaria vesca HOM05D004208 ORTHO05D198159 4.7e-06 57.0 58 55.2


User provided reference genes

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