Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G222800 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1772.7 877 100.0
Sabra05G0171500 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1625.1 903 90.5
Potri.002G039900 Populus trichocarpa HOM05D003973 ORTHO05D004679 0.0e+00 1594.3 889 89.5
Sabra02G0032000 Salix brachista HOM05D003973 ORTHO05D004679 0.0e+00 1541.9 878 87.9
Manes.12G031400 Manihot esculenta HOM05D003973 ORTHO05D004679 0.0e+00 1431.4 874 80.9
TWI12G0927 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1362.4 884 76.7
Thecc.01G260300 Theobroma cacao HOM05D003973 ORTHO05D004679 0.0e+00 1361.3 881 78.1
Atru.chr5.1648 Acer truncatum HOM05D003973 ORTHO05D004679 0.0e+00 1349.3 910 74.6
Ciclev10018809m.g Citrus clementina HOM05D003973 ORTHO05D004679 0.0e+00 1346.3 888 76.8
TWI18G0068 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1334.7 885 76.0
CiPaw.03G262600 Carya illinoinensis HOM05D003973 ORTHO05D004679 0.0e+00 1331.6 856 78.3
COL.COLO4_05173 Corchorus olitorius HOM05D003973 ORTHO05D004679 0.0e+00 1326.6 870 76.9
Gohir.D11G135600 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1326.6 880 76.5
Gohir.A11G129900 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1323.1 880 76.1
Gorai.007G145200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1322.4 880 76.4
Haze_24609 Corylus avellana HOM05D003973 ORTHO05D004679 0.0e+00 1320.4 924 73.6
Gorai.004G072800 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1315.8 875 76.8
TWI75G1776 Tripterygium wilfordii HOM05D003973 ORTHO05D004679 0.0e+00 1313.9 970 69.5
Hma1.2p1_0621F.1_g190820 Hydrangea macrophylla HOM05D003973 ORTHO05D004679 0.0e+00 1304.3 884 74.4
Actinidia12891 Actinidia chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1298.9 879 74.7
Duzib138G0375 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1288.9 872 75.0
Cpa.g.sc50.33 Carica papaya HOM05D003973 ORTHO05D004679 0.0e+00 1283.5 880 74.4
QL09p038243 Quercus lobata HOM05D003973 ORTHO05D004679 0.0e+00 1279.2 873 74.8
Gohir.D08G207800 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1267.3 881 72.8
MD05G1199600 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1263.4 873 74.9
MD10G1185900 Malus domestica HOM05D003973 ORTHO05D004679 0.0e+00 1263.4 870 74.6
CSS0019197 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 0.0e+00 1262.7 883 73.0
Ca_09689_v3 Cicer arietinum L. HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 888 73.1
RcHm_v2.0_Chr6g0288391 Rosa chinensis HOM05D003973 ORTHO05D004679 0.0e+00 1253.4 883 73.2
Dinv34610 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1249.2 878 73.3
CANSAT01G0525 Cannabis sativa HOM05D003973 ORTHO05D004679 0.0e+00 1247.6 888 72.6
Duzib133G1136 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1244.2 881 73.1
VMungo1383G0117 Vigna mungo HOM05D003973 ORTHO05D004679 0.0e+00 1238.4 867 73.9
Glyma.03G162100 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1236.9 888 72.7
Eucgr.B01536 Eucalyptus grandis HOM05D003973 ORTHO05D004679 0.0e+00 1235.3 883 71.5
Prupe.8G225400 Prunus persica HOM05D003973 ORTHO05D004679 0.0e+00 1231.9 880 73.2
Dinv22416 Davidia involucrata HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 871 72.4
Lalb_Chr06g0170381 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1228.8 884 72.2
Lj1g0003934 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1228.0 877 72.3
FAN27G0583 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1227.6 883 71.9
GSVIVG01028304001 Vitis vinifera HOM05D003973 ORTHO05D004679 0.0e+00 1226.5 876 71.1
Nn4g22928 Nelumbo nucifera HOM05D003973 ORTHO05D004679 0.0e+00 1226.1 877 70.0
Lalb_Chr02g0152311 Lupinus albus HOM05D003973 ORTHO05D004679 0.0e+00 1224.9 882 71.8
arahy.Tifrunner.gnm1.ann1.M1CRL2 Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1223.0 875 72.0
Cc11_g02590 Coffea canephora HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 868 71.2
TAR633G0700 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1221.8 875 71.1
Lj5g0017930 Lotus japonicus HOM05D003973 ORTHO05D004679 0.0e+00 1221.1 869 72.0
FvH4_2g21710 Fragaria vesca HOM05D003973 ORTHO05D004679 0.0e+00 1219.9 880 71.9
Glyma.13G122200 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1219.5 861 71.7
Glyma.10G035800 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1214.9 864 71.3
CAN.G194.11 Capsicum annuum HOM05D003973 ORTHO05D004679 0.0e+00 1212.2 876 69.3
Phvul.001G159900 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 0.0e+00 1212.2 868 73.0
FAN15G1892 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1211.4 904 70.5
PGR044G1639 Punica granatum HOM05D003973 ORTHO05D004679 0.0e+00 1211.4 905 70.2
FAN24G2194 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1210.7 902 70.1
FAN20G1573 Fragaria x ananassa HOM05D003973 ORTHO05D004679 0.0e+00 1210.3 880 71.7
Medtr1g070160 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1210.3 872 71.7
Glyma.19G163500 Glycine max HOM05D003973 ORTHO05D004679 0.0e+00 1209.9 886 70.8
Medtr7g096680 Medicago truncatula HOM05D003973 ORTHO05D004679 0.0e+00 1209.5 901 68.9
Duzib211G0218 Durio zibethinus HOM05D003973 ORTHO05D004679 0.0e+00 1208.7 885 71.4
Nitab4.5_0001419g0010 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1208.4 875 69.4
Nitab4.5_0000129g0340 Nicotiana tabacum HOM05D003973 ORTHO05D004679 0.0e+00 1207.2 875 69.3
PGSC0003DMG400031378 Solanum tuberosum HOM05D003973 ORTHO05D004679 0.0e+00 1206.8 880 68.3
TAR362G0234 Trochodendron aralioides HOM05D003973 ORTHO05D004679 0.0e+00 1206.8 873 70.7
arahy.Tifrunner.gnm1.ann1.0L9E2L Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1204.9 898 70.0
TPR.G16308 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1200.3 875 70.5
Psat3g058480 Pisum sativum HOM05D003973 ORTHO05D004679 0.0e+00 1198.0 933 67.4
Gohir.A08G060000 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1196.4 873 71.7
Peaxi162Scf00329g00811 Petunia axillaris HOM05D003973 ORTHO05D004679 0.0e+00 1196.0 902 68.1
TPR.G3551 Trifolium pratense HOM05D003973 ORTHO05D004679 0.0e+00 1193.3 875 71.1
Rhsim13G0034000 Rhododendron simsii HOM05D003973 ORTHO05D004679 0.0e+00 1192.6 890 69.7
Gohir.D08G069200 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1187.6 875 70.7
Sopen04g003790 Solanum pennellii HOM05D003973 ORTHO05D004679 0.0e+00 1179.9 912 65.6
Solyc04g008630.3 Solanum lycopersicum HOM05D003973 ORTHO05D004679 0.0e+00 1178.3 912 65.5
Oeu026512.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1165.6 881 67.3
MSTRG.18316 Avicennia marina HOM05D003973 ORTHO05D004679 0.0e+00 1161.0 876 66.3
ClCG07G000970 Citrullus lanatus HOM05D003973 ORTHO05D004679 0.0e+00 1149.4 892 66.6
Gohir.A08G189300 Gossypium hirsutum HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 881 67.7
MBI17_g07970_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 0.0e+00 1149.0 862 67.3
Gorai.004G220200 Gossypium raimondii HOM05D003973 ORTHO05D004679 0.0e+00 1147.9 749 76.6
MELO3C012904.2 Cucumis melo HOM05D003973 ORTHO05D004679 0.0e+00 1146.3 892 66.7
ECA247G3763 Erigeron canadensis HOM05D003973 ORTHO05D004679 0.0e+00 1145.2 876 67.7
arahy.Tifrunner.gnm1.ann1.61T5XF Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 871 67.5
SalBow4G2825 Salvia bowleyana HOM05D003973 ORTHO05D004679 0.0e+00 1141.3 906 65.3
Sed0015853 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1140.6 881 67.2
Sed0025131 Sechium edule HOM05D003973 ORTHO05D004679 0.0e+00 1139.0 889 66.1
Lsat_1_v5_gn_9_8721 Lactuca sativa HOM05D003973 ORTHO05D004679 0.0e+00 1138.6 878 66.7
THA.LOC104826212 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1137.9 896 66.3
arahy.Tifrunner.gnm1.ann1.B4WKJK Arachis hypogaea HOM05D003973 ORTHO05D004679 0.0e+00 1137.5 871 67.4
CsaV3_3G022520 Cucumis sativus L. HOM05D003973 ORTHO05D004679 0.0e+00 1136.3 902 66.0
THA.LOC104800875 Tarenaya hassleriana HOM05D003973 ORTHO05D004679 0.0e+00 1129.0 889 67.2
Aqoxy1G00848 Aquilegia oxysepala HOM05D003973 ORTHO05D004679 0.0e+00 1120.1 855 66.1
DCAR_005697 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1115.9 875 67.1
Migut.D00414 Erythranthe guttata HOM05D003973 ORTHO05D004679 0.0e+00 1111.7 872 66.7
DCAR_000939 Daucus carota HOM05D003973 ORTHO05D004679 0.0e+00 1109.0 802 70.9
HanXRQChr15g0467921 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1107.0 883 65.1
Ah.11g049650 Amaranthus hybridus HOM05D003973 ORTHO05D004679 0.0e+00 1103.6 873 65.4
HanXRQChr10g0281061 Helianthus annuus HOM05D003973 ORTHO05D004679 0.0e+00 1098.2 876 65.3
PSO063G1318 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1098.2 872 64.4
Lj2A1153G48 Lonicera japonica HOM05D003973 ORTHO05D004679 0.0e+00 1097.8 881 64.8
BolC4t27568H Brassica oleracea HOM05D003973 ORTHO05D004679 0.0e+00 1094.7 889 66.1
Thhalv10016226m.g Eutrema salsugineum HOM05D003973 ORTHO05D004679 0.0e+00 1092.8 896 65.4
BcaB06g28520 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1091.3 889 66.0
PSO782G1372 Papaver somniferum HOM05D003973 ORTHO05D004679 0.0e+00 1087.4 877 63.6
Sp4g13740 Schrenkiella parvula HOM05D003973 ORTHO05D004679 0.0e+00 1086.6 891 65.0
Oeu039681.1 Olea europaea HOM05D003973 ORTHO05D004679 0.0e+00 1085.1 879 65.0
C04p60770 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1084.3 892 65.8
A04p24090 Brassica napus HOM05D003973 ORTHO05D004679 0.0e+00 1083.2 887 64.7
Carub.0004s1253 Capsella rubella HOM05D003973 ORTHO05D004679 0.0e+00 1080.1 886 64.8
AL4G26480 Arabidopsis lyrata HOM05D003973 ORTHO05D004679 0.0e+00 1079.7 890 65.2
BcaB02g10369 Brassica carinata HOM05D003973 ORTHO05D004679 0.0e+00 1079.3 894 65.0
CARHR124850 Cardamine hirsuta HOM05D003973 ORTHO05D004679 6.0e-312 1074.3 895 64.4
AT2G31260 Arabidopsis thaliana HOM05D003973 ORTHO05D004679 4.6e-310 1067.8 899 65.1
BraA04t17928Z Brassica rapa HOM05D003973 ORTHO05D004679 5.9e-310 1067.4 812 68.6
EL10Ac5g10415 Beta vulgaris HOM05D003973 ORTHO05D004679 4.2e-308 1061.2 940 59.9
Lj1A65T50 Lonicera japonica HOM05D003973 ORTHO05D004679 8.9e-306 1053.5 849 66.1
BcaB06g28436 Brassica carinata HOM05D003973 ORTHO05D004679 3.4e-305 1051.6 894 63.4
Psat6g055320 Pisum sativum HOM05D003973 ORTHO05D004679 7.8e-302 1040.4 916 62.8
Aa31LG5G5690 Aethionema arabicum HOM05D003973 ORTHO05D004679 3.6e-299 1031.6 776 68.6
Phvul.007G194300 Phaseolus vulgaris HOM05D003973 ORTHO05D004679 2.9e-296 1021.9 899 60.1
SGA_v2.0_scaffold138G35249 Striga asiatica HOM05D003973 ORTHO05D004679 6.0e-294 1014.2 863 61.8
HanXRQChr08g0217761 Helianthus annuus HOM05D003973 ORTHO05D004679 1.6e-291 1006.1 875 60.6
Oeu058816.4 Olea europaea HOM05D003973 ORTHO05D004679 7.5e-289 997.3 969 56.9
vmacro02653 Vaccinium macrocarpon HOM05D003973 ORTHO05D004679 3.2e-287 991.9 842 63.9
Hund09596 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.6e-286 988.0 882 61.8
Nn3g17035 Nelumbo nucifera HOM05D003973 ORTHO05D004679 3.0e-285 985.3 623 77.5
AUR62024730 Chenopodium quinoa HOM05D003973 ORTHO05D004679 1.9e-284 982.6 894 59.5
AUR62011889 Chenopodium quinoa HOM05D003973 ORTHO05D004679 2.1e-283 979.2 893 59.1
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 7.3e-276 954.1 880 58.6
Sc17g0000740 Simmondsia chinensis HOM05D003973 ORTHO05D004679 9.2e-271 937.2 580 77.8
SHI09836 Sapria himalayana HOM05D003973 ORTHO05D004679 1.7e-269 932.9 921 56.4
ATR0680G230 Amborella trichopoda HOM05D003973 ORTHO05D004679 1.3e-261 906.7 830 57.7
Os10g0163100 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 2.1e-254 882.9 901 52.4
Os03g0248000 Oryza sativa ssp. japonica HOM05D003973 ORTHO05D004679 6.0e-254 881.3 894 53.5
HPP92_008425 Vanilla planifolia HOM05D003973 ORTHO05D004679 3.3e-252 875.5 817 55.9
ATR0559G363 Amborella trichopoda HOM05D003973 ORTHO05D004679 4.3e-252 875.2 800 56.0
Zm00001eb010620 Zea mays HOM05D003973 ORTHO05D004679 1.0e-248 864.0 879 53.6
ECA236G2624 Erigeron canadensis HOM05D003973 ORTHO05D004679 3.9e-245 852.0 877 52.6
Ah.02g111890 Amaranthus hybridus HOM05D003973 ORTHO05D004679 3.4e-241 839.0 792 56.3
CiPaw.04G185700 Carya illinoinensis HOM05D003973 ORTHO05D004679 3.5e-238 828.9 586 73.9
SEGI_30090 Sequoiadendron giganteum HOM05D003973 ORTHO05D004679 1.0e-237 827.4 815 55.1
HPP92_008421 Vanilla planifolia HOM05D003973 ORTHO05D004679 2.1e-230 803.1 626 63.4
Mapoly0002s0148 Marchantia polymorpha HOM05D003973 ORTHO05D004679 5.0e-208 728.8 885 44.7
SMO239G0162 Selaginella moellendorffii HOM05D003973 ORTHO05D004679 9.4e-207 724.5 572 61.5
Pp3c10_9800 Physcomitrium patens HOM05D003973 ORTHO05D004679 4.1e-202 709.1 881 45.6
Pp3c2_1820 Physcomitrium patens HOM05D003973 ORTHO05D004679 3.4e-196 689.5 877 44.1
BraA05t20372Z Brassica rapa HOM05D003973 ORTHO05D004679 4.2e-191 672.5 626 59.3
A05p14440 Brassica napus HOM05D003973 ORTHO05D004679 2.2e-187 660.2 626 58.1
CBR_g24398 Chara braunii HOM05D003973 ORTHO05D004679 1.3e-179 634.4 662 49.2
unitig_60.g25752 Utricularia gibba HOM05D003973 ORTHO05D004679 2.0e-177 627.1 883 43.8
VMungo0720G0690 Vigna mungo HOM05D003973 ORTHO05D004679 3.9e-176 622.9 584 57.0
AUR62024729 Chenopodium quinoa HOM05D003973 ORTHO05D004679 8.1e-142 508.8 428 62.6
MBI18_g15332_MAGBIO Magnolia biondii HOM05D003973 ORTHO05D004679 8.1e-142 508.8 512 54.7
AagrBONN_evm.TU.Sc2ySwM_117.1675 Anthoceros agrestis HOM05D003973 ORTHO05D004679 4.2e-138 496.5 570 45.8
MCO05G121 Micromonas commoda HOM05D003973 ORTHO05D004679 4.1e-117 426.8 597 39.2
CDE02G3928 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.3e-110 402.9 511 44.4
CDE06G1379 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 6.7e-104 382.9 475 48.2
BcaB06g28438 Brassica carinata HOM05D003973 ORTHO05D004679 2.8e-102 377.5 401 54.4
BolC4t23456H Brassica oleracea HOM05D003973 ORTHO05D004679 4.8e-94 350.1 264 65.2
Cre09.g391500 Chlamydomonas reinhardtii HOM05D003973 ORTHO05D004679 3.8e-91 340.5 698 31.5
CDE06G1301 Ceratophyllum demersum HOM05D003973 ORTHO05D004679 1.7e-83 315.1 225 65.3
C04p19230 Brassica napus HOM05D003973 ORTHO05D004679 1.6e-76 292.0 264 57.2
BcaC02g11207 Brassica carinata HOM05D003973 ORTHO05D004679 2.4e-69 268.1 175 73.1
Cfa025050 Carpinus fangiana HOM05D003973 ORTHO05D004679 5.0e-67 260.4 520 31.5
PRCOL_00006952 Prasinoderma coloniale HOM05D003973 ORTHO05D004679 1.2e-60 239.2 520 29.8
Hund02908 Selenicereus undatus HOM05D003973 ORTHO05D004679 9.5e-58 229.6 158 70.9
Psat2g015440 Pisum sativum HOM05D003973 ORTHO05D004679 7.1e-37 160.2 190 51.6
Sc17g0000730 Simmondsia chinensis HOM05D003973 ORTHO05D004679 8.1e-33 146.7 362 35.4
BcaB06g28437 Brassica carinata HOM05D003973 ORTHO05D004679 5.5e-21 107.5 377 29.7
CSS0024912 Camellia sinensis var. sinensis HOM05D003973 ORTHO05D004679 1.3e-19 102.8 75 68.0
AagrBONN_evm.TU.Sc2ySwM_344.134 Anthoceros agrestis HOM05D003973 ORTHO05D004679 7.4e-18 97.1 72 61.1
Hund02909 Selenicereus undatus HOM05D003973 ORTHO05D004679 4.8e-17 94.4 123 48.8
VMungo0720G0978 Vigna mungo HOM05D003973 ORTHO05D435101 4.0e-16 91.3 187 38.5
VMungo0251G0786 Vigna mungo HOM05D003973 ORTHO05D432747 2.7e-12 78.6 74 59.5


User provided reference genes

Program Settings