Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G218700 Populus trichocarpa HOM05D006249 ORTHO05D007643 5.2e-176 620.9 308 100.0
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 1.4e-136 490.0 308 83.4
Manes.05G084500 Manihot esculenta HOM05D006249 ORTHO05D007643 1.1e-133 480.3 309 79.3
Gohir.A11G127400 Gossypium hirsutum HOM05D006249 ORTHO05D007643 1.0e-131 473.8 312 74.0
COL.COLO4_06075 Corchorus olitorius HOM05D006249 ORTHO05D007643 5.0e-131 471.5 312 73.7
Gohir.D11G132800 Gossypium hirsutum HOM05D006249 ORTHO05D007643 3.3e-130 468.8 312 73.1
Duzib138G0419 Durio zibethinus HOM05D006249 ORTHO05D007643 1.6e-129 466.5 307 73.9
Gorai.007G142000 Gossypium raimondii HOM05D006249 ORTHO05D007643 3.6e-129 465.3 312 73.1
Thecc.01G267400 Theobroma cacao HOM05D006249 ORTHO05D007643 8.1e-129 464.2 308 73.1
RcHm_v2.0_Chr6g0289561 Rosa chinensis HOM05D006249 ORTHO05D007643 3.5e-124 448.7 313 72.5
Ciclev10021257m.g Citrus clementina HOM05D006249 ORTHO05D007643 6.0e-124 448.0 314 72.3
CiPaw.03G257400 Carya illinoinensis HOM05D006249 ORTHO05D007643 1.0e-123 447.2 316 71.2
Cpa.g.sc52.92 Carica papaya HOM05D006249 ORTHO05D007643 8.6e-123 444.1 311 72.7
FvH4_2g22511 Fragaria vesca HOM05D006249 ORTHO05D007643 1.5e-122 443.4 312 71.2
GSVIVG01000723001 Vitis vinifera HOM05D006249 ORTHO05D007643 1.9e-122 443.0 313 71.2
QL12p042687 Quercus lobata HOM05D006249 ORTHO05D007643 4.3e-122 441.8 312 72.1
CSS0046504 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 8.1e-121 437.6 318 71.1
ClCG01G001850 Citrullus lanatus HOM05D006249 ORTHO05D007643 1.4e-120 436.8 254 80.3
Haze_24532 Corylus avellana HOM05D006249 ORTHO05D007643 4.0e-120 435.3 313 70.9
Peaxi162Scf00049g00209 Petunia axillaris HOM05D006249 ORTHO05D007643 1.5e-119 433.3 252 81.0
CsaV3_5G002000 Cucumis sativus L. HOM05D006249 ORTHO05D007643 7.6e-119 431.0 254 79.1
Sopen09g027650 Solanum pennellii HOM05D006249 ORTHO05D007643 2.2e-118 429.5 309 69.3
MELO3C005753.2 Cucumis melo HOM05D006249 ORTHO05D007643 6.4e-118 427.9 254 79.1
Solyc09g065860.3 Solanum lycopersicum HOM05D006249 ORTHO05D007643 8.4e-118 427.6 309 68.9
Eucgr.K03312 Eucalyptus grandis HOM05D006249 ORTHO05D007643 2.4e-117 426.0 275 74.9
Prupe.8G232100 Prunus persica HOM05D006249 ORTHO05D007643 2.4e-117 426.0 314 68.5
PGR044G2488 Punica granatum HOM05D006249 ORTHO05D007643 3.2e-117 425.6 254 78.3
Aa31LG1G9510 Aethionema arabicum HOM05D006249 ORTHO05D007643 5.4e-117 424.9 311 68.2
MD05G1205700 Malus domestica HOM05D006249 ORTHO05D007643 7.1e-117 424.5 313 68.4
vmacro14872 Vaccinium macrocarpon HOM05D006249 ORTHO05D007643 1.6e-116 423.3 291 70.8
Carub.0001s0216 Capsella rubella HOM05D006249 ORTHO05D007643 3.5e-116 422.2 316 67.1
TAR362G0606 Trochodendron aralioides HOM05D006249 ORTHO05D007643 3.5e-116 422.2 313 70.6
BraA10t42442Z Brassica rapa HOM05D006249 ORTHO05D007643 6.0e-116 421.4 308 67.9
Atru.chr5.1566 Acer truncatum HOM05D006249 ORTHO05D007643 7.8e-116 421.0 232 84.5
Atru.chr5.1568 Acer truncatum HOM05D006249 ORTHO05D007643 7.8e-116 421.0 232 84.5
BcaC07g42289 Brassica carinata HOM05D006249 ORTHO05D007643 1.0e-115 420.6 314 66.6
C05p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.0e-115 420.6 322 65.5
BolC5t28944H Brassica oleracea HOM05D006249 ORTHO05D007643 1.0e-115 420.6 314 66.6
Dinv34569 Davidia involucrata HOM05D006249 ORTHO05D007643 1.0e-115 420.6 312 69.9
CARHR002370 Cardamine hirsuta HOM05D006249 ORTHO05D007643 1.3e-115 420.2 317 66.6
A10p01650 Brassica napus HOM05D006249 ORTHO05D007643 1.7e-115 419.9 308 67.9
CANSAT01G0091 Cannabis sativa HOM05D006249 ORTHO05D007643 3.9e-115 418.7 251 76.9
AT1G03030 Arabidopsis thaliana HOM05D006249 ORTHO05D007643 5.1e-115 418.3 248 77.4
CAN.G1259.4 Capsicum annuum HOM05D006249 ORTHO05D007643 1.9e-114 416.4 303 69.3
Sc17g0000990 Simmondsia chinensis HOM05D006249 ORTHO05D007643 4.3e-114 415.2 246 77.2
Rhsim01G0269700 Rhododendron simsii HOM05D006249 ORTHO05D007643 9.6e-114 414.1 321 65.7
ECA248G0032 Erigeron canadensis HOM05D006249 ORTHO05D007643 1.6e-113 413.3 300 64.7
Migut.D00374 Erythranthe guttata HOM05D006249 ORTHO05D007643 4.7e-113 411.8 309 65.4
Thhalv10008317m.g Eutrema salsugineum HOM05D006249 ORTHO05D007643 8.1e-113 411.0 245 78.0
Medtr7g096100 Medicago truncatula HOM05D006249 ORTHO05D007643 1.8e-112 409.8 312 64.4
Nitab4.5_0001556g0120 Nicotiana tabacum HOM05D006249 ORTHO05D007643 6.9e-112 407.9 263 74.5
THA.LOC104801257 Tarenaya hassleriana HOM05D006249 ORTHO05D007643 9.0e-112 407.5 246 77.2
AL1G12480 Arabidopsis lyrata HOM05D006249 ORTHO05D007643 3.4e-111 405.6 232 81.0
CSS0032391 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 3.4e-111 405.6 299 69.9
Cc01_g18850 Coffea canephora HOM05D006249 ORTHO05D007643 3.4e-111 405.6 310 63.5
Lj2C1159G1 Lonicera japonica HOM05D006249 ORTHO05D007643 3.4e-111 405.6 312 65.7
Glyma.19G161200 Glycine max HOM05D006249 ORTHO05D007643 4.4e-111 405.2 311 65.6
Lsat_1_v5_gn_5_186740 Lactuca sativa HOM05D006249 ORTHO05D007643 2.2e-110 402.9 309 62.5
Hund09572 Selenicereus undatus HOM05D006249 ORTHO05D007643 2.9e-110 402.5 274 70.4
Lj1g0022179 Lotus japonicus HOM05D006249 ORTHO05D007643 3.8e-110 402.1 311 64.3
Psat3g061040 Pisum sativum HOM05D006249 ORTHO05D007643 3.8e-110 402.1 256 70.7
TPR.G5717 Trifolium pratense HOM05D006249 ORTHO05D007643 6.4e-110 401.4 313 64.9
MBI04_g06851_MAGBIO Magnolia biondii HOM05D006249 ORTHO05D007643 8.4e-110 401.0 324 64.2
PGSC0003DMG400019301 Solanum tuberosum HOM05D006249 ORTHO05D007643 1.4e-109 400.2 247 75.7
SalBow4G2323 Salvia bowleyana HOM05D006249 ORTHO05D007643 2.4e-109 399.4 312 65.4
SGA_v2.0_scaffold1G00558 Striga asiatica HOM05D004045 ORTHO05D004923 3.2e-109 399.1 248 74.2
HanXRQChr01g0006841 Helianthus annuus HOM05D006249 ORTHO05D007643 2.1e-108 396.4 314 59.6
Nn1g02571 Nelumbo nucifera HOM05D006249 ORTHO05D007643 3.5e-108 395.6 276 71.7
VMungo1383G3440 Vigna mungo HOM05D004045 ORTHO05D004923 3.5e-108 395.6 314 65.3
FAN15G1994 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-107 394.0 347 60.2
FAN15G3229 Fragaria x ananassa HOM05D004045 ORTHO05D004923 1.0e-107 394.0 347 60.2
Aqoxy2G03531 Aquilegia oxysepala HOM05D006249 ORTHO05D007643 2.3e-107 392.9 296 65.9
AUR62011941 Chenopodium quinoa HOM05D006249 ORTHO05D007643 3.9e-107 392.1 249 73.5
Oeu018173.1 Olea europaea HOM05D006249 ORTHO05D007643 1.9e-106 389.8 313 64.2
TWI18G0435 Tripterygium wilfordii HOM05D006249 ORTHO05D007643 1.9e-106 389.8 289 70.6
MSTRG.21512 Avicennia marina HOM05D006249 ORTHO05D007643 9.6e-106 387.5 309 63.8
arahy.Tifrunner.gnm1.ann1.3ZGG11 Arachis hypogaea HOM05D006249 ORTHO05D007643 2.4e-104 382.9 254 70.9
arahy.Tifrunner.gnm1.ann1.EN4NAA Arachis hypogaea HOM05D006249 ORTHO05D007643 5.3e-104 381.7 306 62.7
Lalb_Chr25g0290111 Lupinus albus HOM05D006249 ORTHO05D007643 9.0e-104 380.9 278 65.8
Nitab4.5_0000187g0200 Nicotiana tabacum HOM05D006249 ORTHO05D007643 2.9e-102 375.9 230 77.0
CDE06G0138 Ceratophyllum demersum HOM05D006249 ORTHO05D007643 3.8e-102 375.6 265 67.5
ATR0665G572 Amborella trichopoda HOM05D006249 ORTHO05D007643 7.1e-101 371.3 273 64.5
PSO832G1981 Papaver somniferum HOM05D006249 ORTHO05D007643 1.1e-98 364.0 253 70.0
PSO210G4763 Papaver somniferum HOM05D006249 ORTHO05D007643 9.6e-98 360.9 253 69.6
Zm00001eb135540 Zea mays HOM05D006249 ORTHO05D007643 4.8e-97 358.6 248 67.7
Os12g0601200 Oryza sativa ssp. japonica HOM05D006249 ORTHO05D007643 1.4e-96 357.1 251 66.1
Sed0010412 Sechium edule HOM05D006249 ORTHO05D007643 5.3e-96 355.1 276 66.3
BcaC07g42286 Brassica carinata HOM05D006249 ORTHO05D007643 9.0e-96 354.4 321 58.6
HPP92_012490 Vanilla planifolia HOM05D006249 ORTHO05D007643 7.6e-95 351.3 260 63.5
Ah.02g111470 Amaranthus hybridus HOM05D006249 ORTHO05D007643 1.1e-90 337.4 249 65.9
AUR62032256 Chenopodium quinoa HOM05D006249 ORTHO05D007643 2.0e-87 326.6 311 57.6
Mapoly0096s0074 Marchantia polymorpha HOM05D006249 ORTHO05D007643 1.5e-82 310.5 246 61.0
BcaC07g42292 Brassica carinata HOM05D006249 ORTHO05D007643 8.2e-81 304.7 263 60.1
Phvul.001G156700 Phaseolus vulgaris HOM05D006249 ORTHO05D007643 2.9e-78 296.2 249 61.4
Actinidia21156 Actinidia chinensis HOM05D006249 ORTHO05D007643 3.8e-78 295.8 254 59.8
Medtr4g076080 Medicago truncatula HOM05D006249 ORTHO05D007643 3.8e-78 295.8 297 54.2
Pp3c17_16800 Physcomitrium patens HOM05D006249 ORTHO05D007643 3.9e-75 285.8 244 57.0
unitig_0.g1129 Utricularia gibba HOM05D006249 ORTHO05D007643 3.1e-72 276.2 181 70.2
EL10Ac5g10475 Beta vulgaris HOM05D006249 ORTHO05D007643 1.4e-67 260.8 151 76.2
SEGI_12640 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 3.9e-67 259.2 176 66.5
AagrBONN_evm.TU.Sc2ySwM_228.3891 Anthoceros agrestis HOM05D006249 ORTHO05D007643 4.4e-66 255.8 210 58.6
RcHm_v2.0_Chr4g0397901 Rosa chinensis HOM05D006249 ORTHO05D007643 1.1e-64 251.1 176 69.3
SMO358G0282 Selaginella moellendorffii HOM05D000331 ORTHO05D002018 1.3e-54 217.6 173 59.5
Cre02.g101000 Chlamydomonas reinhardtii HOM05D006249 ORTHO05D007643 2.4e-48 196.8 269 39.8
MCO14G208 Micromonas commoda HOM05D006249 ORTHO05D007643 9.4e-45 184.9 245 41.2
arahy.Tifrunner.gnm1.ann1.U7WVQR Arachis hypogaea HOM05D006249 ORTHO05D007643 1.6e-44 184.1 203 48.3
Oeu018171.1 Olea europaea HOM05D006249 ORTHO05D007643 1.8e-40 170.6 171 57.3
Sp1g02020 Schrenkiella parvula HOM05D006249 ORTHO05D007643 4.1e-40 169.5 188 51.1
CBR_g19145 Chara braunii HOM05D006249 ORTHO05D007643 5.4e-40 169.1 157 55.4
Ca_15970_v3 Cicer arietinum L. HOM05D006249 ORTHO05D007643 1.6e-36 157.5 134 56.7
Medtr8g064430 Medicago truncatula HOM05D006249 ORTHO05D007643 1.3e-33 147.9 123 57.7
Glyma.03G158766 Glycine max HOM05D006249 ORTHO05D007643 1.8e-32 144.1 94 73.4
Hund30725 Selenicereus undatus HOM05D006249 ORTHO05D007643 1.2e-31 141.4 99 67.7
Hund30696 Selenicereus undatus HOM05D006249 ORTHO05D007643 4.3e-29 132.9 98 65.3
arahy.Tifrunner.gnm1.ann1.FBQK8B Arachis hypogaea HOM05D006249 ORTHO05D007643 2.2e-25 120.6 125 50.4
arahy.Tifrunner.gnm1.ann1.AHQ53Z Arachis hypogaea HOM05D006249 ORTHO05D007643 4.9e-25 119.4 119 52.1
Cfa022768 Carpinus fangiana HOM05D006249 ORTHO05D007643 8.3e-25 118.6 150 41.3
PRCOL_00003971 Prasinoderma coloniale HOM05D006249 ORTHO05D007643 5.0e-22 109.4 178 36.5
Glyma.03G158832 Glycine max HOM05D006249 ORTHO05D007643 8.6e-22 108.6 65 73.8
SHI34902 Sapria himalayana HOM05D006249 ORTHO05D007643 1.9e-21 107.5 148 44.6
CSS0005124 Camellia sinensis var. sinensis HOM05D006249 ORTHO05D007643 4.3e-21 106.3 58 84.5
SHI29847 Sapria himalayana HOM05D006249 ORTHO05D007643 3.6e-20 103.2 135 41.5
SHI29011 Sapria himalayana HOM05D006249 ORTHO05D007643 7.8e-15 85.5 210 31.4
SHI16544 Sapria himalayana HOM05D006249 ORTHO05D007643 4.7e-12 76.3 116 41.4
SHI36883 Sapria himalayana HOM05D006249 ORTHO05D007643 8.9e-11 72.0 56 53.6
SHI04506 Sapria himalayana HOM05D006249 ORTHO05D007643 2.0e-10 70.9 121 35.5
SHI54291 Sapria himalayana HOM05D006249 ORTHO05D007643 2.6e-10 70.5 159 34.6
SHI34501 Sapria himalayana HOM05D006249 ORTHO05D007643 4.4e-10 69.7 96 40.6
SHI36882 Sapria himalayana HOM05D006249 ORTHO05D007643 9.9e-10 68.6 116 37.1
SHI31647 Sapria himalayana HOM05D006249 ORTHO05D007643 2.4e-08 63.9 61 49.2
Actinidia05974 Actinidia chinensis HOM05D001287 ORTHO05D001226 5.4e-08 62.8 204 27.9
SHI27267 Sapria himalayana HOM05D000624 ORTHO05D000495 9.2e-08 62.0 56 53.6
SHI49503 Sapria himalayana HOM05D000624 ORTHO05D000495 9.2e-08 62.0 49 63.3
SEGI_29111 Sequoiadendron giganteum HOM05D006249 ORTHO05D007643 9.2e-08 62.0 41 63.4
BraA09t35980Z Brassica rapa HOM05D001287 ORTHO05D001226 1.2e-07 61.6 248 27.0
Gohir.A05G354300 Gossypium hirsutum HOM05D001287 ORTHO05D001226 2.1e-07 60.8 204 28.4
Gorai.012G065500 Gossypium raimondii HOM05D001287 ORTHO05D001226 2.1e-07 60.8 204 28.4
AT3G27440 Arabidopsis thaliana HOM05D001287 ORTHO05D001226 2.7e-07 60.5 217 26.7
AL5G16850 Arabidopsis lyrata HOM05D001287 ORTHO05D001226 4.6e-07 59.7 216 26.9
SHI43714 Sapria himalayana HOM05D000624 ORTHO05D007643 6.0e-07 59.3 49 57.1
Sp2g16640 Schrenkiella parvula HOM05D001287 ORTHO05D001226 7.8e-07 58.9 216 26.4
CARHR148810 Cardamine hirsuta HOM05D001287 ORTHO05D001226 1.0e-06 58.5 216 26.9
BcaB04g19439 Brassica carinata HOM05D001287 ORTHO05D001226 1.7e-06 57.8 218 26.6
BcaC04g23902 Brassica carinata HOM05D001287 ORTHO05D001226 1.7e-06 57.8 218 26.6
C09p03630 Brassica napus HOM05D001287 ORTHO05D001226 1.7e-06 57.8 218 26.6
BolC9t53282H Brassica oleracea HOM05D001287 ORTHO05D001226 1.7e-06 57.8 218 26.6
SHI41947 Sapria himalayana HOM05D000624 ORTHO05D000495 2.3e-06 57.4 49 59.2
SHI45616 Sapria himalayana HOM05D000624 ORTHO05D000495 3.0e-06 57.0 49 59.2
CSS0038124 Camellia sinensis var. sinensis HOM05D001287 ORTHO05D001226 5.1e-06 56.2 129 32.6
Potri.017G071200 Populus trichocarpa HOM05D001287 ORTHO05D001226 6.6e-06 55.8 213 24.9
SHI49364 Sapria himalayana HOM05D000624 ORTHO05D000495 8.6e-06 55.5 49 57.1


User provided reference genes

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