Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G217300 Populus trichocarpa HOM05D003696 ORTHO05D005158 3.9e-243 844.3 423 100.0
Potri.002G046000 Populus trichocarpa HOM05D003696 ORTHO05D005158 1.1e-221 773.1 421 91.2
Sabra02G0037000 Salix brachista HOM05D003696 ORTHO05D005158 4.2e-213 744.6 447 84.6
Manes.01G202600 Manihot esculenta HOM05D003696 ORTHO05D005158 1.2e-207 726.5 421 85.3
Thecc.01G268800 Theobroma cacao HOM05D003696 ORTHO05D005158 3.5e-207 724.9 421 83.1
CiPaw.03G256800 Carya illinoinensis HOM05D003696 ORTHO05D005158 2.9e-206 721.8 421 84.3
Atru.chr5.1552 Acer truncatum HOM05D003696 ORTHO05D005158 6.6e-206 720.7 421 82.7
GSVIVG01000711001 Vitis vinifera HOM05D003696 ORTHO05D005158 1.9e-205 719.2 421 83.8
MD03G1255900 Malus domestica HOM05D003696 ORTHO05D005158 1.2e-204 716.5 420 83.3
Prupe.8G233000 Prunus persica HOM05D003696 ORTHO05D005158 4.7e-204 714.5 421 83.6
Eucgr.B01485 Eucalyptus grandis HOM05D003696 ORTHO05D005158 6.1e-204 714.1 421 82.2
RcHm_v2.0_Chr6g0289661 Rosa chinensis HOM05D003696 ORTHO05D005158 5.2e-203 711.1 421 82.4
Actinidia21150 Actinidia chinensis HOM05D003696 ORTHO05D005158 6.8e-203 710.7 421 83.1
FAN15G1876 Fragaria x ananassa HOM05D003696 ORTHO05D005158 6.8e-203 710.7 421 82.7
Lj2C1161G6 Lonicera japonica HOM05D003696 ORTHO05D005158 1.5e-202 709.5 409 84.6
Nn1g02525 Nelumbo nucifera HOM05D003696 ORTHO05D005158 2.6e-202 708.8 421 82.2
FAN27G2942 Fragaria x ananassa HOM05D003696 ORTHO05D005158 3.4e-202 708.4 422 82.5
Duzib133G0262 Durio zibethinus HOM05D003696 ORTHO05D005158 4.4e-202 708.0 422 81.5
Ciclev10019381m.g Citrus clementina HOM05D003696 ORTHO05D005158 7.5e-202 707.2 421 81.7
Cc01_g18910 Coffea canephora HOM05D003696 ORTHO05D005158 4.9e-201 704.5 411 83.2
CsaV3_7G027640 Cucumis sativus L. HOM05D003696 ORTHO05D005158 4.9e-201 704.5 421 79.6
Hma1.2p1_0760F.1_g214220 Hydrangea macrophylla HOM05D003696 ORTHO05D005158 4.9e-201 704.5 408 83.6
MD11G1276500 Malus domestica HOM05D003696 ORTHO05D005158 8.3e-201 703.7 420 82.4
Duzib138G0212 Durio zibethinus HOM05D003696 ORTHO05D005158 1.4e-200 703.0 449 77.3
Glyma.02G143000 Glycine max HOM05D003696 ORTHO05D005158 1.4e-200 703.0 421 81.5
FvH4_2g22730 Fragaria vesca HOM05D003696 ORTHO05D005158 3.2e-200 701.8 421 81.7
Lalb_Chr01g0019921 Lupinus albus HOM05D003696 ORTHO05D005158 4.1e-200 701.4 421 81.5
PGR119G0829 Punica granatum HOM05D003696 ORTHO05D005158 4.1e-200 701.4 421 80.8
arahy.Tifrunner.gnm1.ann1.R5NTZZ Arachis hypogaea HOM05D003696 ORTHO05D005158 5.4e-200 701.0 421 80.8
Dinv22488 Davidia involucrata HOM05D003696 ORTHO05D005158 9.2e-200 700.3 421 82.7
Lalb_Chr06g0162701 Lupinus albus HOM05D003696 ORTHO05D005158 1.2e-199 699.9 421 81.0
Manes.05G083700 Manihot esculenta HOM05D003696 ORTHO05D005158 1.2e-199 699.9 421 82.4
Glyma.10G031400 Glycine max HOM05D003696 ORTHO05D005158 1.6e-199 699.5 421 80.8
Gohir.D07G214400 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.6e-199 699.5 421 80.5
Gorai.001G242400 Gossypium raimondii HOM05D003696 ORTHO05D005158 2.0e-199 699.1 421 80.3
TWI18G1352 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 3.5e-199 698.4 421 81.5
Gohir.A07G208500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 7.8e-199 697.2 421 80.0
TAR362G0028 Trochodendron aralioides HOM05D003696 ORTHO05D005158 1.0e-198 696.8 421 81.0
vmacro02623 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 1.7e-198 696.0 411 83.5
Lj1g0000304 Lotus japonicus HOM05D003696 ORTHO05D005158 3.9e-198 694.9 421 80.0
Sed0021830 Sechium edule HOM05D003696 ORTHO05D005158 5.0e-198 694.5 421 78.9
Peaxi162Scf00049g02229 Petunia axillaris HOM05D003696 ORTHO05D005158 8.6e-198 693.7 410 82.4
ECA248G0710 Erigeron canadensis HOM05D003696 ORTHO05D005158 1.5e-197 693.0 421 80.8
Solyc09g065810.3 Solanum lycopersicum HOM05D003696 ORTHO05D005158 1.9e-197 692.6 421 81.5
Sopen09g027590 Solanum pennellii HOM05D003696 ORTHO05D005158 1.9e-197 692.6 421 81.5
CANSAT25G2047 Cannabis sativa HOM05D003696 ORTHO05D005158 2.5e-197 692.2 421 80.3
Aqoxy2G03500 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 3.3e-197 691.8 421 80.3
Phvul.007G176200 Phaseolus vulgaris HOM05D003696 ORTHO05D005158 7.3e-197 690.6 421 79.6
Rhsim01G0270500 Rhododendron simsii HOM05D003696 ORTHO05D005158 9.5e-197 690.3 421 81.2
TWI75G1072 Tripterygium wilfordii HOM05D003696 ORTHO05D005158 1.4e-195 686.4 413 80.4
Gohir.A11G126500 Gossypium hirsutum HOM05D003696 ORTHO05D005158 1.8e-195 686.0 421 78.6
Gohir.D11G132000 Gossypium hirsutum HOM05D003696 ORTHO05D005158 5.2e-195 684.5 421 78.1
Gorai.007G141200 Gossypium raimondii HOM05D003696 ORTHO05D005158 2.0e-194 682.6 421 77.9
HanXRQChr06g0177911 Helianthus annuus HOM05D003696 ORTHO05D005158 5.8e-194 681.0 420 80.2
Ca_08640_v3 Cicer arietinum L. HOM05D003696 ORTHO05D005158 2.9e-193 678.7 421 78.1
Migut.D00342 Erythranthe guttata HOM05D003696 ORTHO05D005158 8.3e-193 677.2 411 80.5
HanXRQChr01g0006891 Helianthus annuus HOM05D003696 ORTHO05D005158 2.4e-192 675.6 409 80.2
THA.LOC104804694 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 2.4e-192 675.6 421 77.7
THA.LOC104824177 Tarenaya hassleriana HOM05D003696 ORTHO05D005158 2.4e-192 675.6 421 77.4
Haze_24522 Corylus avellana HOM05D003696 ORTHO05D005158 4.1e-192 674.9 399 83.2
Lj5g0013019 Lotus japonicus HOM05D003696 ORTHO05D005158 5.4e-192 674.5 421 78.1
Thhalv10016535m.g Eutrema salsugineum HOM05D003696 ORTHO05D005158 9.2e-192 673.7 421 76.7
PSO832G3077 Papaver somniferum HOM05D003696 ORTHO05D005158 9.2e-192 673.7 421 78.6
Sp4g21230 Schrenkiella parvula HOM05D003696 ORTHO05D005158 9.2e-192 673.7 421 76.7
TPR.G19113 Trifolium pratense HOM05D003696 ORTHO05D005158 6.0e-191 671.0 421 77.4
PSO210G6865 Papaver somniferum HOM05D003696 ORTHO05D005158 1.0e-190 670.2 421 77.9
MSTRG.18280 Avicennia marina HOM05D003696 ORTHO05D005158 2.3e-190 669.1 411 79.8
vmacro14880 Vaccinium macrocarpon HOM05D003696 ORTHO05D005158 2.3e-190 669.1 467 73.4
AT2G38840 Arabidopsis thaliana HOM05D003696 ORTHO05D005158 3.9e-190 668.3 421 76.2
AL4G36150 Arabidopsis lyrata HOM05D003696 ORTHO05D005158 5.0e-190 667.9 421 76.5
ATR0665G388 Amborella trichopoda HOM05D003696 ORTHO05D005158 8.6e-190 667.2 418 76.3
A03p21680 Brassica napus HOM05D003696 ORTHO05D005158 1.1e-189 666.8 420 76.2
BraA03t11403Z Brassica rapa HOM05D003696 ORTHO05D005158 1.1e-189 666.8 420 76.2
BcaB01g03621 Brassica carinata HOM05D003696 ORTHO05D005158 1.5e-189 666.4 421 75.8
C03p25680 Brassica napus HOM05D003696 ORTHO05D005158 1.5e-189 666.4 422 76.1
Psat3g060760 Pisum sativum HOM05D003696 ORTHO05D005158 1.5e-189 666.4 421 77.4
BolC3t14954H Brassica oleracea HOM05D003696 ORTHO05D005158 1.9e-189 666.0 420 76.2
BcaC01g05515 Brassica carinata HOM05D003696 ORTHO05D005158 2.5e-189 665.6 420 76.2
AUR62011954 Chenopodium quinoa HOM05D003696 ORTHO05D005158 1.6e-188 662.9 422 76.5
Aqoxy5G00373 Aquilegia oxysepala HOM05D003696 ORTHO05D005158 2.1e-188 662.5 421 77.7
Carub.0004s2087 Capsella rubella HOM05D003696 ORTHO05D005158 1.4e-187 659.8 417 76.5
A04p29630 Brassica napus HOM05D003696 ORTHO05D005158 1.8e-187 659.4 421 75.5
arahy.Tifrunner.gnm1.ann1.PHA4NK Arachis hypogaea HOM05D003696 ORTHO05D005158 2.3e-187 659.1 400 79.8
unitig_22.g5276 Utricularia gibba HOM05D003696 ORTHO05D005158 4.0e-187 658.3 411 78.6
Medtr1g070940 Medicago truncatula HOM05D003696 ORTHO05D005158 6.8e-187 657.5 421 76.2
Solyc06g084080.4 Solanum lycopersicum HOM05D003696 ORTHO05D005158 2.0e-186 656.0 411 77.6
Rhsim13G0030400 Rhododendron simsii HOM05D003696 ORTHO05D005158 3.4e-186 655.2 408 79.7
BcaC02g07441 Brassica carinata HOM05D003696 ORTHO05D005158 1.3e-185 653.3 418 75.6
C04p66920 Brassica napus HOM05D003696 ORTHO05D005158 1.3e-185 653.3 418 75.6
Sopen06g035470 Solanum pennellii HOM05D003696 ORTHO05D005158 1.3e-185 653.3 411 77.4
BraA04t18429Z Brassica rapa HOM05D003696 ORTHO05D005158 3.7e-185 651.7 418 75.4
BolC4t28193H Brassica oleracea HOM05D003696 ORTHO05D005158 5.4e-184 647.9 418 75.4
MELO3C015756.2 Cucumis melo HOM05D003696 ORTHO05D005158 3.5e-183 645.2 393 77.9
CDE07G1976 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 4.6e-183 644.8 421 74.1
HPP92_012304 Vanilla planifolia HOM05D003696 ORTHO05D005158 1.7e-182 642.9 422 72.3
TAR365G0099 Trochodendron aralioides HOM05D003696 ORTHO05D005158 3.0e-182 642.1 373 85.3
EL10Ac5g10463 Beta vulgaris HOM05D003696 ORTHO05D005158 6.6e-182 641.0 421 74.6
CDE04G3179 Ceratophyllum demersum HOM05D003696 ORTHO05D005158 5.6e-181 637.9 421 73.9
Aa31LG5G20830 Aethionema arabicum HOM05D003696 ORTHO05D005158 1.4e-179 633.3 402 76.4
CAN.G1488.3 Capsicum annuum HOM05D003696 ORTHO05D005158 1.8e-179 632.9 393 79.1
SalBow4G1850 Salvia bowleyana HOM05D003696 ORTHO05D005158 5.2e-179 631.3 390 79.2
Lsat_1_v5_gn_5_186821 Lactuca sativa HOM05D003696 ORTHO05D005158 6.8e-179 630.9 401 77.6
Oeu011521.4 Olea europaea HOM05D003696 ORTHO05D005158 2.2e-177 625.9 374 82.4
FAN20G1369 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.9e-177 625.5 376 81.4
CARHR133570 Cardamine hirsuta HOM05D003696 ORTHO05D005158 1.6e-175 619.8 392 76.3
AUR62032267 Chenopodium quinoa HOM05D003696 ORTHO05D005158 3.9e-174 615.1 422 72.5
Zm00001eb060800 Zea mays HOM05D003696 ORTHO05D005158 8.7e-174 614.0 422 69.7
Os07g0181700 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 1.2e-172 610.1 421 68.6
VMungo0720G2873 Vigna mungo HOM05D003696 ORTHO05D005158 8.1e-172 607.4 374 80.2
Medtr7g096020 Medicago truncatula HOM05D003696 ORTHO05D005158 1.1e-171 607.1 374 80.5
ClCG09G007480 Citrullus lanatus HOM05D003696 ORTHO05D005158 1.3e-169 600.1 417 71.7
Zm00001eb301480 Zea mays HOM05D003696 ORTHO05D005158 1.7e-169 599.7 422 68.7
Nitab4.5_0000187g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 2.9e-169 599.0 363 80.4
arahy.Tifrunner.gnm1.ann1.RW1UC5 Arachis hypogaea HOM05D003696 ORTHO05D005158 3.8e-169 598.6 401 73.6
TPR.G39048 Trifolium pratense HOM05D003696 ORTHO05D005158 3.8e-169 598.6 383 77.0
Nitab4.5_0003053g0040 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.9e-168 596.3 363 80.2
QL12p042578 Quercus lobata HOM05D003696 ORTHO05D005158 5.4e-168 594.7 350 82.3
SGA_v2.0_scaffold138G35289 Striga asiatica HOM05D003696 ORTHO05D005158 1.6e-167 593.2 397 75.1
Peaxi162Scf01311g00020 Petunia axillaris HOM05D003696 ORTHO05D005158 6.6e-166 587.8 370 76.5
arahy.Tifrunner.gnm1.ann1.YF2GLB Arachis hypogaea HOM05D003696 ORTHO05D005158 9.6e-165 583.9 395 72.4
DCAR_002690 Daucus carota HOM05D003696 ORTHO05D005158 6.2e-164 581.3 375 76.8
Actinidia04660 Actinidia chinensis HOM05D003696 ORTHO05D005158 4.0e-163 578.6 341 82.4
CAN.G771.13 Capsicum annuum HOM05D003696 ORTHO05D005158 3.4e-162 575.5 383 73.9
Os03g0796800 Oryza sativa ssp. japonica HOM05D003696 ORTHO05D005158 3.8e-161 572.0 403 69.2
CSS0026583 Camellia sinensis var. sinensis HOM05D003696 ORTHO05D005158 1.1e-160 570.5 341 81.5
FAN24G1113 Fragaria x ananassa HOM05D003696 ORTHO05D005158 2.1e-156 556.2 341 79.8
Oeu025782.1 Olea europaea HOM05D003696 ORTHO05D005158 1.4e-155 553.5 411 67.9
SHI09972 Sapria himalayana HOM05D003696 ORTHO05D005158 6.9e-155 551.2 370 75.1
Psat6g058040 Pisum sativum HOM05D003696 ORTHO05D005158 1.5e-154 550.1 342 78.7
Nitab4.5_0004899g0140 Nicotiana tabacum HOM05D003696 ORTHO05D005158 2.0e-154 549.7 390 70.5
COL.COLO4_06092 Corchorus olitorius HOM05D003696 ORTHO05D005158 1.5e-149 533.5 375 71.7
Nitab4.5_0001044g0030 Nicotiana tabacum HOM05D003696 ORTHO05D005158 1.2e-146 523.9 422 65.4
PGSC0003DMG400020060 Solanum tuberosum HOM05D003696 ORTHO05D005158 2.2e-145 519.6 331 76.4
Dinv34560 Davidia involucrata HOM05D003696 ORTHO05D005158 3.8e-137 492.3 284 85.6
Cpa.g.sc52.106 Carica papaya HOM05D003696 ORTHO05D005158 2.5e-136 489.6 284 84.5
SMO358G0641 Selaginella moellendorffii HOM05D003696 ORTHO05D005158 5.1e-134 481.9 400 57.5
Mapoly0093s0035 Marchantia polymorpha HOM05D003696 ORTHO05D005158 5.3e-131 471.9 415 54.7
Sed0026747 Sechium edule HOM05D003696 ORTHO05D005158 6.5e-129 464.9 285 78.2
Pp3c22_17680 Physcomitrium patens HOM05D003696 ORTHO05D005158 7.9e-127 458.0 413 56.4
Sc05g0001070 Simmondsia chinensis HOM05D003696 ORTHO05D005158 8.2e-124 448.0 284 76.4
SEGI_18155 Sequoiadendron giganteum HOM05D003696 ORTHO05D005158 2.1e-119 433.3 338 63.0
DCAR_018442 Daucus carota HOM05D003696 ORTHO05D005158 3.0e-118 429.5 314 69.7
Zm00001eb060850 Zea mays HOM05D003696 ORTHO05D005158 5.2e-118 428.7 374 59.1
CBR_g8307 Chara braunii HOM05D003696 ORTHO05D005158 2.2e-105 386.7 405 47.4
Ah.11g050060 Amaranthus hybridus HOM05D003696 ORTHO05D005158 1.0e-102 377.9 267 72.3
Actinidia24931 Actinidia chinensis HOM05D003696 ORTHO05D005158 2.8e-100 369.8 231 78.8
Ah.02g111370 Amaranthus hybridus HOM05D003696 ORTHO05D005158 5.0e-97 359.0 249 71.1
Hund22719 Selenicereus undatus HOM05D003696 ORTHO05D005158 1.8e-94 350.5 209 77.0
Zm00001eb212950 Zea mays HOM05D003696 ORTHO05D005158 1.1e-83 314.7 212 72.2
FAN12G4236 Fragaria x ananassa HOM05D003696 ORTHO05D005158 7.8e-82 308.5 286 54.2
Hund22720 Selenicereus undatus HOM05D003696 ORTHO05D005158 4.6e-74 282.7 184 75.5
Zm00001eb060900 Zea mays HOM05D003696 ORTHO05D020192 2.2e-68 263.8 183 67.8
MCO03G033 Micromonas commoda HOM05D003696 ORTHO05D005158 2.9e-68 263.5 397 36.8
HanXRQChr04g0094761 Helianthus annuus HOM05D003696 ORTHO05D005158 1.0e-65 255.0 160 77.5
Cre16.g663050 Chlamydomonas reinhardtii HOM05D003696 ORTHO05D005158 2.5e-64 250.4 380 37.4
arahy.Tifrunner.gnm1.ann1.1H3032 Arachis hypogaea HOM05D003696 ORTHO05D005158 3.9e-57 226.5 203 60.6
arahy.Tifrunner.gnm1.ann1.VHR0A7 Arachis hypogaea HOM05D001154 ORTHO05D010892 7.1e-51 205.7 124 81.5
Duzib211G0248 Durio zibethinus HOM05D003696 ORTHO05D020192 3.4e-45 186.8 110 82.7
Cpa.g.sc52.105 Carica papaya HOM05D003696 ORTHO05D020192 4.3e-40 169.9 96 78.1
arahy.Tifrunner.gnm1.ann1.Y88CQU Arachis hypogaea HOM05D003696 ORTHO05D005158 2.7e-34 150.6 140 57.9
HanXRQChr11g0343431 Helianthus annuus HOM05D003696 ORTHO05D005158 7.9e-34 149.1 139 56.1
HanXRQChr04g0098101 Helianthus annuus HOM05D003696 ORTHO05D005158 3.4e-29 133.7 70 91.4
C04p68080 Brassica napus HOM05D003696 ORTHO05D020192 1.7e-20 104.8 59 72.9
BolC4t28313H Brassica oleracea HOM05D003696 ORTHO05D020192 1.7e-20 104.8 59 72.9
BraA04t18522Z Brassica rapa HOM05D003696 ORTHO05D020192 5.5e-19 99.8 59 69.5
C04p68090 Brassica napus HOM05D025610 ORTHO05D016804 7.4e-16 89.4 109 45.9
BolC4t28314H Brassica oleracea HOM05D025610 ORTHO05D016804 7.4e-16 89.4 109 45.9
C04p68070 Brassica napus HOM05D003696 ORTHO05D016804 4.1e-14 83.6 66 62.1
BolC4t28312H Brassica oleracea HOM05D003696 ORTHO05D016804 4.1e-14 83.6 66 62.1
BraA04t18521Z Brassica rapa HOM05D000956 ORTHO05D016804 1.1e-11 75.5 57 61.4
arahy.Tifrunner.gnm1.ann1.ER9TT4 Arachis hypogaea HOM05D038369 ORTHO05D010597 2.1e-10 71.2 46 73.9
arahy.Tifrunner.gnm1.ann1.IE214W Arachis hypogaea HOM05D001154 ORTHO05D010892 3.6e-10 70.5 34 88.2
BcaC02g07336 Brassica carinata HOM05D001127 ORTHO05D002230 4.7e-10 70.1 34 85.3
HanXRQChr09g0243441 Helianthus annuus HOM05D003696 ORTHO05D005158 4.7e-10 70.1 143 35.7
BcaC02g07333 Brassica carinata HOM05D001127 ORTHO05D016804 6.1e-10 69.7 45 68.9
HanXRQChr03g0064341 Helianthus annuus HOM05D003696 ORTHO05D020192 5.1e-09 66.6 33 87.9
A06p28820 Brassica napus HOM05D003696 ORTHO05D016804 1.3e-07 62.0 44 63.6
BraA06t25826Z Brassica rapa HOM05D003696 ORTHO05D016804 1.3e-07 62.0 44 63.6


User provided reference genes

Program Settings