Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 2.1e-194 682.2 351 100.0
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 1.0e-164 583.6 353 85.0
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 3.5e-152 542.0 351 79.8
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.3e-122 443.7 345 70.4
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 2.0e-91 340.1 353 55.8
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.1e-89 334.3 352 55.4
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 2.3e-87 326.6 350 54.0
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 2.3e-87 326.6 354 54.5
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.7e-85 319.3 349 55.0
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 6.9e-84 315.1 348 54.0
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.3e-82 310.8 353 52.4
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.3e-82 310.8 358 53.4
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 3.2e-81 306.2 359 52.1
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 9.6e-78 294.7 341 51.0
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 3.7e-77 292.7 355 50.7
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.2e-75 287.7 352 49.1
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.5e-75 285.8 344 52.0
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.0e-74 284.6 344 50.9
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 3.8e-74 282.7 255 61.6
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 6.5e-74 282.0 345 48.7
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.4e-73 280.8 344 51.2
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 1.8e-71 273.9 348 49.4
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.8e-71 273.9 352 48.0
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 3.0e-71 273.1 346 51.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.9e-70 270.4 356 49.2
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 1.9e-70 270.4 276 56.9
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.5e-70 270.0 349 49.0
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 4.5e-67 259.2 350 47.4
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.9e-65 253.8 440 42.3
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.2e-64 251.1 354 45.2
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 1.6e-64 250.8 349 45.3
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 8.8e-63 245.0 364 45.9
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 8.8e-63 245.0 354 46.9
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 1.1e-62 244.6 351 45.6
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.1e-62 244.6 367 43.6
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 2.5e-62 243.4 329 47.7
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 9.7e-62 241.5 332 47.6
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 2.8e-61 240.0 323 48.3
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 6.3e-61 238.8 331 46.2
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 2.4e-60 236.9 353 44.2
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 3.1e-60 236.5 334 48.5
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.1e-60 236.1 354 45.8
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 6.9e-60 235.3 277 50.5
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 1.2e-59 234.6 331 46.2
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.0e-58 231.5 318 45.6
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.0e-58 231.5 349 43.0
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.0e-58 231.5 350 43.7
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 5.0e-58 229.2 277 50.5
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 6.5e-58 228.8 349 42.1
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 6.5e-58 228.8 344 45.9
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 8.5e-58 228.4 322 45.7
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 1.1e-57 228.0 351 44.2
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 1.4e-57 227.6 365 45.2
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 9.4e-57 224.9 281 50.2
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 1.6e-56 224.2 351 42.7
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 6.1e-56 222.2 355 45.1
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 7.9e-56 221.9 350 44.3
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 1.5e-54 217.6 235 56.2
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 7.4e-54 215.3 347 43.8
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 9.7e-54 214.9 363 40.8
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.2e-53 213.8 347 43.5
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.8e-53 213.4 364 42.6
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.4e-52 211.1 361 41.8
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.4e-52 210.3 332 43.4
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 4.1e-52 209.5 352 42.0
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.2e-51 208.0 347 42.9
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.0e-51 207.2 345 42.9
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 2.0e-51 207.2 371 40.7
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 5.9e-51 205.7 271 49.1
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 2.9e-50 203.4 355 40.8
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 2.9e-50 203.4 354 40.7
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 5.0e-50 202.6 339 41.3
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 4.2e-49 199.5 281 48.0
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.2e-48 198.0 356 40.2
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.6e-48 197.6 335 43.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 2.7e-48 196.8 343 41.7
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.7e-48 196.8 351 40.7
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 3.6e-48 196.4 354 42.9
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 4.7e-48 196.1 313 44.4
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.7e-48 196.1 345 42.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 4.0e-47 193.0 317 43.5
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.1e-46 191.4 359 40.9
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 2.6e-46 190.3 328 42.4
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.3e-46 189.9 354 39.5
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.4e-46 189.5 272 47.8
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 5.7e-46 189.1 349 40.1
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 7.4e-46 188.7 330 41.8
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 9.7e-46 188.3 348 40.2
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 1.3e-45 188.0 329 39.8
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 1.7e-45 187.6 359 40.4
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 4.8e-45 186.0 348 39.9
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 9.1e-44 181.8 238 45.8
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 1.2e-43 181.4 286 45.1
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 2.6e-43 180.3 354 41.0
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.9e-43 179.1 299 41.5
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 2.2e-42 177.2 347 38.6
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 6.5e-42 175.6 295 42.7
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 8.5e-42 175.3 357 39.2
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 1.1e-41 174.9 255 46.7
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.5e-41 174.5 349 37.5
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 1.9e-41 174.1 298 39.9
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 4.2e-41 172.9 350 37.4
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 7.2e-41 172.2 354 38.1
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 9.4e-41 171.8 350 40.6
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 9.4e-41 171.8 343 38.5
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 1.6e-40 171.0 184 50.5
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 2.7e-40 170.2 371 38.3
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 8.0e-40 168.7 347 37.2
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 1.0e-39 168.3 348 37.1
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.4e-39 167.9 348 36.8
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.8e-39 167.5 316 38.3
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 4.0e-39 166.4 354 39.5
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 1.5e-38 164.5 347 35.7
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 2.0e-38 164.1 350 37.1
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 2.6e-38 163.7 360 37.8
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 2.6e-38 163.7 348 35.6
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.6e-38 163.7 351 37.0
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.4e-38 163.3 349 37.0
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 5.7e-38 162.5 325 37.2
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 1.3e-37 161.4 349 35.5
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.2e-37 160.6 301 39.5
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 2.8e-37 160.2 347 38.3
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 4.8e-37 159.5 324 37.0
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 3.1e-36 156.8 297 36.7
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 3.1e-36 156.8 330 36.4
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 7.0e-36 155.6 212 47.2
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.0e-35 154.1 359 36.2
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 4.5e-35 152.9 291 38.5
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 7.7e-35 152.1 214 48.6
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 2.9e-34 150.2 289 38.4
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 8.5e-34 148.7 289 38.1
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.5e-33 147.1 357 34.2
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 3.2e-33 146.7 251 43.0
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 1.8e-31 141.0 341 34.6
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.8e-31 141.0 347 33.7
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.8e-31 141.0 297 35.4
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.2e-30 138.3 229 40.6
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.2e-30 138.3 300 37.7
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 4.4e-30 136.3 303 35.6
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 8.3e-29 132.1 335 35.5
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.1e-28 131.7 345 31.9
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 1.2e-27 128.3 241 40.2
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.0e-27 127.5 183 43.7
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 2.3e-23 114.0 78 74.4
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.0e-23 113.6 283 36.7
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 2.6e-22 110.5 212 37.3
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.7e-21 107.8 122 54.9
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 4.9e-21 106.3 96 64.6
COL.COLO4_09196 Corchorus olitorius HOM05D004643 ORTHO05D005535 6.4e-21 105.9 163 41.7
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 2.0e-19 100.9 200 36.5
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 4.6e-19 99.8 277 33.9
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.9e-17 94.4 278 30.6
CSS0034684 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 3.3e-17 93.6 97 55.7
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 7.3e-17 92.4 175 37.7
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.0e-15 88.6 182 35.2
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.4e-12 78.2 62 53.2
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 4.3e-09 66.6 112 43.8
Pp3c6_23650 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.2e-08 65.1 141 38.3
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 3.6e-08 63.5 141 34.0
Pp3c25_6330 Physcomitrium patens HOM05D002346 ORTHO05D002452 8.1e-08 62.4 169 36.1
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 8.1e-08 62.4 186 30.1
Pp3c5_11800 Physcomitrium patens HOM05D002346 ORTHO05D000768 1.8e-07 61.2 219 31.5
Peaxi162Scf00376g00327 Petunia axillaris HOM05D002346 ORTHO05D002452 4.0e-07 60.1 136 32.4
SEGI_28730 Sequoiadendron giganteum HOM05D002346 ORTHO05D002452 5.2e-07 59.7 220 29.1
Lsat_1_v5_gn_5_11760 Lactuca sativa HOM05D004348 ORTHO05D006191 6.8e-07 59.3 93 40.9
Lsat_1_v5_gn_8_161541 Lactuca sativa HOM05D004643 ORTHO05D005535 6.8e-07 59.3 93 40.9
Mapoly0097s0021 Marchantia polymorpha HOM05D002346 ORTHO05D002452 6.8e-07 59.3 145 34.5
Pp3c25_6300 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.2e-06 58.5 148 35.8
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 1.5e-06 58.2 143 34.3
Pp3c16_13490 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.5e-06 58.2 198 30.8
ATR0006G029 Amborella trichopoda HOM05D001047 ORTHO05D000768 2.0e-06 57.8 161 29.8
ATR0753G139 Amborella trichopoda HOM05D002346 ORTHO05D002452 2.6e-06 57.4 152 30.9
AagrBONN_evm.TU.Sc2ySwM_368.2073 Anthoceros agrestis HOM05D002346 ORTHO05D038404 2.6e-06 57.4 103 39.8
Ah.16g109020 Amaranthus hybridus HOM05D004643 ORTHO05D059934 5.8e-06 56.2 31 80.6
Duzib150G0095 Durio zibethinus HOM05D001047 ORTHO05D000768 5.8e-06 56.2 139 31.7
Nn8g38582 Nelumbo nucifera HOM05D001047 ORTHO05D000768 5.8e-06 56.2 142 33.8
Potri.003G068900 Populus trichocarpa HOM05D001047 ORTHO05D000768 5.8e-06 56.2 142 31.7
SGA_v2.0_scaffold21G09523 Striga asiatica HOM05D001047 ORTHO05D000768 5.8e-06 56.2 122 36.9
Lalb_Chr13g0299341 Lupinus albus HOM05D001047 ORTHO05D000768 7.5e-06 55.8 148 29.1
AagrBONN_evm.TU.Sc2ySwM_117.2255 Anthoceros agrestis HOM05D002346 ORTHO05D002452 9.8e-06 55.5 196 32.7


User provided reference genes

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