Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.005G211400 Populus trichocarpa HOM05D004016 ORTHO05D004732 7.1e-119 430.6 220 100.0
Sabra05G0161500 Salix brachista HOM05D004016 ORTHO05D004732 3.4e-89 332.0 220 80.9
Potri.002G050900 Populus trichocarpa HOM05D004016 ORTHO05D004732 4.5e-89 331.6 221 78.3
Sabra02G0041700 Salix brachista HOM05D004016 ORTHO05D004732 3.0e-85 318.9 221 76.9
Manes.01G206100 Manihot esculenta HOM05D004016 ORTHO05D004732 7.2e-71 271.2 220 67.7
Manes.05G079900 Manihot esculenta HOM05D004016 ORTHO05D004732 7.9e-70 267.7 220 65.0
Ciclev10022155m.g Citrus clementina HOM05D004016 ORTHO05D004732 1.6e-62 243.4 222 61.3
Cpa.g.sc487.4 Carica papaya HOM05D004016 ORTHO05D004732 2.6e-60 236.1 222 60.4
Prupe.8G238400 Prunus persica HOM05D004016 ORTHO05D004732 1.1e-58 230.7 227 60.4
COL.COLO4_09066 Corchorus olitorius HOM05D004016 ORTHO05D004732 4.1e-58 228.8 226 61.9
Thecc.01G275600 Theobroma cacao HOM05D004016 ORTHO05D004732 1.5e-57 226.9 223 61.9
Duzib138G0182 Durio zibethinus HOM05D004016 ORTHO05D004732 5.9e-57 224.9 229 62.0
Dinv32914 Davidia involucrata HOM05D004016 ORTHO05D004732 7.7e-57 224.6 226 61.9
Atru.chr5.1471 Acer truncatum HOM05D004016 ORTHO05D004732 1.7e-56 223.4 226 59.3
Gohir.A08G065500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.7e-56 223.4 221 62.4
Duzib133G1129 Durio zibethinus HOM05D004016 ORTHO05D004732 3.2e-55 219.2 218 61.0
Gorai.004G078400 Gossypium raimondii HOM05D004016 ORTHO05D004732 5.5e-55 218.4 221 61.1
Gohir.D08G074000 Gossypium hirsutum HOM05D004016 ORTHO05D004732 9.4e-55 217.6 221 61.1
Cfa006163 Carpinus fangiana HOM05D004016 ORTHO05D004732 1.2e-54 217.2 216 58.3
MD03G1262100 Malus domestica HOM05D004016 ORTHO05D004732 1.6e-54 216.9 221 58.8
Actinidia21126 Actinidia chinensis HOM05D004016 ORTHO05D004732 2.1e-54 216.5 223 57.8
RcHm_v2.0_Chr6g0290651 Rosa chinensis HOM05D004016 ORTHO05D004732 2.1e-54 216.5 238 55.5
TWI18G0383 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 7.9e-54 214.5 223 58.7
Haze_04687 Corylus avellana HOM05D004016 ORTHO05D004732 1.0e-53 214.2 216 58.3
FAN15G1959 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.0e-53 214.2 222 58.1
MD11G1282800 Malus domestica HOM05D004016 ORTHO05D004732 2.3e-53 213.0 222 59.0
FvH4_2g23281 Fragaria vesca HOM05D004016 ORTHO05D004732 6.7e-53 211.5 221 57.5
Hma1.2p1_0667F.1_g199710 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 6.7e-53 211.5 224 58.0
FAN24G3262 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.8e-53 211.1 226 57.1
FAN27G2694 Fragaria x ananassa HOM05D004016 ORTHO05D004732 8.8e-53 211.1 222 57.2
FAN20G3152 Fragaria x ananassa HOM05D004016 ORTHO05D004732 1.5e-52 210.3 226 57.1
Cc01_g19290 Coffea canephora HOM05D004016 ORTHO05D004732 2.0e-52 209.9 228 56.1
Hma1.2p1_0822F.1_g224340 Hydrangea macrophylla HOM05D004016 ORTHO05D004732 7.0e-50 201.4 221 57.0
Ah.02g110900 Amaranthus hybridus HOM05D004016 ORTHO05D004732 1.6e-49 200.3 222 56.3
EL10Ac5g10544 Beta vulgaris HOM05D004016 ORTHO05D004732 2.0e-49 199.9 222 56.3
Ca_09744_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 3.5e-49 199.1 220 55.0
Lj2E1169T0 Lonicera japonica HOM05D004016 ORTHO05D004732 4.5e-49 198.7 226 55.8
Lalb_Chr21g0306401 Lupinus albus HOM05D004016 ORTHO05D004732 7.7e-49 198.0 221 54.3
TAR636G0684 Trochodendron aralioides HOM05D004016 ORTHO05D004732 1.0e-48 197.6 216 56.9
Ca_08613_v3 Cicer arietinum L. HOM05D004016 ORTHO05D004732 8.5e-48 194.5 216 54.2
ClCG07G000350 Citrullus lanatus HOM05D004016 ORTHO05D004732 1.1e-47 194.1 219 53.4
TWI12G1445 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.5e-47 193.7 224 54.9
Lalb_Chr02g0142631 Lupinus albus HOM05D004016 ORTHO05D004732 3.2e-47 192.6 221 52.9
Gohir.A11G124100 Gossypium hirsutum HOM05D004016 ORTHO05D004732 4.2e-47 192.2 220 54.1
Solyc09g065380.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 4.2e-47 192.2 219 52.1
PGSC0003DMG400019358 Solanum tuberosum HOM05D004016 ORTHO05D004732 4.2e-47 192.2 219 51.6
Sopen09g027150 Solanum pennellii HOM05D004016 ORTHO05D004732 5.5e-47 191.8 219 52.1
vmacro14911 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.2e-46 190.7 221 54.8
Lalb_Chr06g0162891 Lupinus albus HOM05D004016 ORTHO05D004732 2.7e-46 189.5 217 50.2
Sc05g0001440 Simmondsia chinensis HOM05D004016 ORTHO05D004732 4.7e-46 188.7 220 53.6
AUR62028601 Chenopodium quinoa HOM05D004016 ORTHO05D004732 6.1e-46 188.3 221 54.8
Gohir.A08G186500 Gossypium hirsutum HOM05D004016 ORTHO05D004732 6.1e-46 188.3 223 54.3
TAR633G2817 Trochodendron aralioides HOM05D004016 ORTHO05D004732 6.1e-46 188.3 215 55.3
MSTRG.18246 Avicennia marina HOM05D004016 ORTHO05D004732 8.0e-46 188.0 225 54.7
Sed0007164 Sechium edule HOM05D004016 ORTHO05D004732 8.0e-46 188.0 222 52.3
THA.LOC104801244 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 8.0e-46 188.0 222 54.5
THA.LOC104825992 Tarenaya hassleriana HOM05D004016 ORTHO05D004732 8.0e-46 188.0 227 54.6
Rhsim01G0273500 Rhododendron simsii HOM05D004016 ORTHO05D004732 1.0e-45 187.6 222 53.2
Gorai.004G216600 Gossypium raimondii HOM05D004016 ORTHO05D004732 2.3e-45 186.4 217 52.5
CsaV3_6G037200 Cucumis sativus L. HOM05D004016 ORTHO05D004732 3.0e-45 186.0 220 52.3
Gohir.D08G204600 Gossypium hirsutum HOM05D004016 ORTHO05D004732 3.0e-45 186.0 219 53.9
MELO3C014394.2 Cucumis melo HOM05D004016 ORTHO05D004732 8.8e-45 184.5 220 52.3
MSTRG.21548 Avicennia marina HOM05D004016 ORTHO05D004732 1.5e-44 183.7 227 53.7
Phvul.007G173300 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 2.0e-44 183.3 220 53.6
arahy.Tifrunner.gnm1.ann1.256EAD Arachis hypogaea HOM05D004016 ORTHO05D004732 4.4e-44 182.2 218 51.8
Gorai.007G138300 Gossypium raimondii HOM05D004016 ORTHO05D004732 7.5e-44 181.4 219 52.5
Psat3g063280 Pisum sativum HOM05D004016 ORTHO05D004732 9.7e-44 181.0 216 51.9
Lj5g0005099 Lotus japonicus HOM05D004016 ORTHO05D004732 2.2e-43 179.9 222 51.4
Migut.D00318 Erythranthe guttata HOM05D004016 ORTHO05D004732 2.8e-43 179.5 223 55.2
Glyma.02G146200 Glycine max HOM05D004016 ORTHO05D004732 4.8e-43 178.7 221 53.8
Gohir.D11G129300 Gossypium hirsutum HOM05D004016 ORTHO05D004732 1.1e-42 177.6 219 51.1
CAN.G1549.22 Capsicum annuum HOM05D004016 ORTHO05D004732 2.4e-42 176.4 223 50.2
Lsat_1_v5_gn_8_56660 Lactuca sativa HOM05D004016 ORTHO05D004732 4.1e-42 175.6 227 50.2
Phvul.001G153100 Phaseolus vulgaris HOM05D004016 ORTHO05D004732 5.3e-42 175.3 221 52.5
Aa31LG5G2350 Aethionema arabicum HOM05D004016 ORTHO05D004732 7.0e-42 174.9 220 51.8
Oeu040656.1 Olea europaea HOM05D004016 ORTHO05D004732 1.2e-41 174.1 225 51.6
Hund02825 Selenicereus undatus HOM05D004016 ORTHO05D004732 1.2e-41 174.1 227 51.5
Lj1g0004863 Lotus japonicus HOM05D004016 ORTHO05D004732 1.6e-41 173.7 214 50.9
LjContig00056g0010505 Lotus japonicus HOM05D004016 ORTHO05D004732 1.6e-41 173.7 214 50.9
HanXRQChr04g0118991 Helianthus annuus HOM05D004016 ORTHO05D004732 2.7e-41 172.9 227 49.8
PGR044G0005 Punica granatum HOM05D004016 ORTHO05D004732 2.7e-41 172.9 225 51.6
Glyma.10G027800 Glycine max HOM05D004016 ORTHO05D004732 3.5e-41 172.6 222 52.7
Hund27940 Selenicereus undatus HOM05D004016 ORTHO05D004732 4.5e-41 172.2 225 50.7
Medtr7g095160 Medicago truncatula HOM05D004016 ORTHO05D004732 5.9e-41 171.8 216 50.0
CAN.G1549.11 Capsicum annuum HOM05D004016 ORTHO05D004732 1.0e-40 171.0 221 48.9
Oeu025739.1 Olea europaea HOM05D004016 ORTHO05D004732 1.3e-40 170.6 224 53.6
Oeu028065.1 Olea europaea HOM05D004016 ORTHO05D004732 1.3e-40 170.6 237 51.1
Actinidia24906 Actinidia chinensis HOM05D004016 ORTHO05D004732 3.8e-40 169.1 214 49.5
CAN.G1549.21 Capsicum annuum HOM05D004016 ORTHO05D004732 3.8e-40 169.1 223 48.9
VMungo1383G1854 Vigna mungo HOM05D004016 ORTHO05D004732 3.8e-40 169.1 221 50.7
Eucgr.H01463 Eucalyptus grandis HOM05D004016 ORTHO05D004732 1.1e-39 167.5 225 49.8
Nitab4.5_0002928g0010 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.5e-39 167.2 222 47.3
Glyma.19G157800 Glycine max HOM05D004016 ORTHO05D004732 3.2e-39 166.0 221 50.2
Migut.N02038 Erythranthe guttata HOM05D004016 ORTHO05D004732 4.2e-39 165.6 224 50.0
CiPaw.08G107200 Carya illinoinensis HOM05D004016 ORTHO05D004732 3.6e-38 162.5 189 51.9
CARHR251020 Cardamine hirsuta HOM05D004016 ORTHO05D004732 4.7e-38 162.2 217 48.4
DCAR_002723 Daucus carota HOM05D004016 ORTHO05D004732 4.7e-38 162.2 227 50.7
QL12p021105 Quercus lobata HOM05D004016 ORTHO05D004732 1.0e-37 161.0 237 48.5
Sc17g0001350 Simmondsia chinensis HOM05D004016 ORTHO05D004732 1.0e-37 161.0 220 48.6
Glyma.03G155700 Glycine max HOM05D004016 ORTHO05D004732 1.4e-37 160.6 221 49.8
MSTRG.17454 Avicennia marina HOM05D004016 ORTHO05D004732 1.8e-37 160.2 226 49.1
Lj1C48T4 Lonicera japonica HOM05D004016 ORTHO05D004732 1.2e-36 157.5 216 50.9
VMungo0720G0880 Vigna mungo HOM05D004016 ORTHO05D004732 1.2e-36 157.5 200 52.0
Peaxi162Scf00783g00017 Petunia axillaris HOM05D004016 ORTHO05D004732 2.0e-36 156.8 224 46.0
Carub.0006s3440 Capsella rubella HOM05D004016 ORTHO05D004732 7.5e-36 154.8 220 48.2
Nitab4.5_0008064g0020 Nicotiana tabacum HOM05D004016 ORTHO05D004732 7.5e-36 154.8 220 46.8
AT4G02715 Arabidopsis thaliana HOM05D004016 ORTHO05D004732 1.3e-35 154.1 218 49.1
Nitab4.5_0005172g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 1.3e-35 154.1 220 46.8
PGSC0003DMG400020056 Solanum tuberosum HOM05D004016 ORTHO05D004732 1.7e-35 153.7 219 45.7
Thhalv10028968m.g Eutrema salsugineum HOM05D004016 ORTHO05D004732 2.2e-35 153.3 220 47.3
Sopen06g035580 Solanum pennellii HOM05D004016 ORTHO05D004732 3.7e-35 152.5 222 45.5
Peaxi162Scf01248g00010 Petunia axillaris HOM05D004016 ORTHO05D004732 4.8e-35 152.1 222 46.8
Psat6g059840 Pisum sativum HOM05D004016 ORTHO05D004732 8.3e-35 151.4 209 47.4
Sp6g02620 Schrenkiella parvula HOM05D004016 ORTHO05D004732 1.1e-34 151.0 222 48.2
Solyc06g084200.2 Solanum lycopersicum HOM05D004016 ORTHO05D004732 1.1e-34 151.0 220 48.2
DCAR_018429 Daucus carota HOM05D004016 ORTHO05D004732 4.1e-34 149.1 254 45.3
Rhsim13G0026600 Rhododendron simsii HOM05D004016 ORTHO05D004732 4.1e-34 149.1 222 46.4
TPR.G27140 Trifolium pratense HOM05D004016 ORTHO05D004732 1.6e-33 147.1 218 46.3
AL6G50300 Arabidopsis lyrata HOM05D004016 ORTHO05D004732 2.7e-33 146.4 217 47.0
Nitab4.5_0009529g0030 Nicotiana tabacum HOM05D004016 ORTHO05D004732 5.9e-33 145.2 192 46.9
TPR.G24294 Trifolium pratense HOM05D004016 ORTHO05D004732 7.7e-33 144.8 223 45.7
Aqoxy5G00450 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.0e-32 144.4 227 46.7
Aqoxy2G03410 Aquilegia oxysepala HOM05D004016 ORTHO05D004732 1.3e-32 144.1 219 46.6
vmacro02591 Vaccinium macrocarpon HOM05D004016 ORTHO05D004732 1.7e-32 143.7 222 46.4
BcaB05g23659 Brassica carinata HOM05D004016 ORTHO05D004732 8.5e-32 141.4 223 44.4
SGA_v2.0_scaffold1G00497 Striga asiatica HOM05D004016 ORTHO05D004732 7.2e-31 138.3 199 48.2
BcaB01g02015 Brassica carinata HOM05D004016 ORTHO05D004732 4.7e-30 135.6 222 45.5
SGA_v2.0_scaffold138G35322 Striga asiatica HOM05D004016 ORTHO05D004732 8.0e-30 134.8 202 48.0
ECA236G1435 Erigeron canadensis HOM05D004016 ORTHO05D004732 1.0e-29 134.4 225 44.4
ClCG09G007200 Citrullus lanatus HOM05D004016 ORTHO05D004732 3.4e-28 129.4 223 43.0
BcaC04g24008 Brassica carinata HOM05D004016 ORTHO05D004732 2.0e-25 120.2 221 43.0
BolC9t53149H Brassica oleracea HOM05D004016 ORTHO05D004732 2.0e-25 120.2 221 43.0
C09p02200 Brassica napus HOM05D004016 ORTHO05D004732 2.7e-25 119.8 217 41.5
Gorai.009G456000 Gossypium raimondii HOM05D004016 ORTHO05D004732 4.5e-25 119.0 139 54.7
PSO761G0274 Papaver somniferum HOM05D004016 ORTHO05D004732 1.3e-24 117.5 234 43.6
BcaC03g16166 Brassica carinata HOM05D004016 ORTHO05D004732 3.3e-23 112.8 219 41.6
Medtr1g071810 Medicago truncatula HOM05D004016 ORTHO05D004732 9.5e-23 111.3 312 31.7
Oeu013891.1 Olea europaea HOM05D004016 ORTHO05D004732 9.5e-23 111.3 170 47.1
PSO210G5515 Papaver somniferum HOM05D004016 ORTHO05D004732 1.6e-22 110.5 234 42.3
CsaV3_7G027970 Cucumis sativus L. HOM05D004016 ORTHO05D004732 2.1e-22 110.2 225 40.0
A09p02110 Brassica napus HOM05D004016 ORTHO05D004732 2.8e-22 109.8 217 40.6
C02p39140 Brassica napus HOM05D004016 ORTHO05D004732 4.7e-22 109.0 219 40.6
MELO3C015815.2 Cucumis melo HOM05D004016 ORTHO05D004732 6.1e-22 108.6 222 41.0
HPP92_013967 Vanilla planifolia HOM05D004016 ORTHO05D004732 1.0e-21 107.8 217 38.7
BraA09t35860Z Brassica rapa HOM05D004016 ORTHO05D004732 2.3e-21 106.7 217 40.1
Psat1g067520 Pisum sativum HOM05D004016 ORTHO05D004732 2.3e-21 106.7 196 41.3
ECA247G1708 Erigeron canadensis HOM05D004016 ORTHO05D004732 9.8e-20 101.3 190 41.1
unitig_0.g129 Utricularia gibba HOM05D004016 ORTHO05D004732 1.3e-19 100.9 173 43.9
BolC2t09924H Brassica oleracea HOM05D004016 ORTHO05D004732 1.7e-19 100.5 191 40.8
Oeu034146.1 Olea europaea HOM05D004016 ORTHO05D004732 2.2e-19 100.1 194 40.2
ATR0697G155 Amborella trichopoda HOM05D004016 ORTHO05D004732 3.7e-19 99.4 279 32.6
Zm00001eb403300 Zea mays HOM05D004016 ORTHO05D004732 2.5e-15 86.7 221 35.3
Os03g0160200 Oryza sativa ssp. japonica HOM05D004016 ORTHO05D004732 9.5e-15 84.7 226 38.1
GSVIVG01001172001 Vitis vinifera HOM05D004016 ORTHO05D004732 1.2e-14 84.3 60 61.7
Sed0001131 Sechium edule HOM05D004016 ORTHO05D004732 4.0e-13 79.3 225 34.7
A02p24930 Brassica napus HOM05D004016 ORTHO05D004732 8.9e-13 78.2 189 38.6
A03p30890 Brassica napus HOM05D004016 ORTHO05D004732 1.2e-12 77.8 89 57.3
BraA02t07483Z Brassica rapa HOM05D004016 ORTHO05D004732 1.2e-12 77.8 189 38.1
Zm00001eb047890 Zea mays HOM05D004016 ORTHO05D004732 2.6e-12 76.6 179 34.6
VMungo1383G2032 Vigna mungo HOM05D004016 ORTHO05D004732 9.8e-12 74.7 117 43.6
SEGI_39625 Sequoiadendron giganteum HOM05D004016 ORTHO05D004732 1.7e-11 73.9 106 49.1
Nn4g22231 Nelumbo nucifera HOM05D004016 ORTHO05D004732 8.3e-11 71.6 50 68.0
TWI75G1401 Tripterygium wilfordii HOM05D004016 ORTHO05D004732 1.6e-09 67.4 46 67.4
Mapoly0128s0012 Marchantia polymorpha HOM05D004016 ORTHO05D004732 1.1e-07 61.2 98 48.0
BcaC01g06736 Brassica carinata HOM05D002144 ORTHO05D002170 1.5e-07 60.8 85 49.4
BcaC01g06738 Brassica carinata HOM05D004016 ORTHO05D004732 1.9e-07 60.5 46 65.2
SMO134G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 1.9e-07 60.5 90 45.6
SMO347G0037 Selaginella moellendorffii HOM05D004016 ORTHO05D004732 6.2e-06 55.5 87 39.1
VMungo0540G2292 Vigna mungo HOM05D004016 ORTHO05D004732 8.1e-06 55.1 96 41.7


User provided reference genes

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